Gcaud1805.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1805.t1
Unique NameGcaud1805.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2042_length_7094_cov_4.903042contigNODE_2042_length_7094_cov_4.903042:27..2891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog144197.XP_008288980.1
Preferred nameGALK2
PFAMsGHMP_kinases_C,GHMP_kinases_N,GalKase_gal_bdg
Max annot lvl33208|Metazoa
KEGG koko:K18674
GOsGO:0003674,GO:0003824,GO:0004335,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006012,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019318,GO:0031982,GO:0043226,GO:0043227,GO:0043230,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044421,GO:0044424,GO:0044464,GO:0046835,GO:0070062,GO:0071704,GO:1903561
Evalue7.51e-19
EggNOG OGsCOG0153@1|root,KOG0631@2759|Eukaryota,38ESX@33154|Opisthokonta,3BENI@33208|Metazoa,3D0CA@33213|Bilateria,47ZX3@7711|Chordata,497Z4@7742|Vertebrata,4A1J8@7898|Actinopterygii
EC2.7.1.157
DescriptionGalactokinase 2
COG categoryG
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1805Gcaud1805Gracilaria caudata M_176_S67 malegeneNODE_2042_length_7094_cov_4.903042 27..2891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1805.t1Gcaud1805.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2042_length_7094_cov_4.903042 27..2891 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1805.t1.start1Gcaud1805.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2042_length_7094_cov_4.903042 27..29 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1805.t1.CDS1Gcaud1805.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2042_length_7094_cov_4.903042 27..409 +
Gcaud1805.t1.CDS2Gcaud1805.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2042_length_7094_cov_4.903042 2645..2672 +
Gcaud1805.t1.CDS3Gcaud1805.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2042_length_7094_cov_4.903042 2811..2891 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1805.t1.exon1Gcaud1805.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2042_length_7094_cov_4.903042 27..409 +
Gcaud1805.t1.exon2Gcaud1805.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2042_length_7094_cov_4.903042 2645..2672 +
Gcaud1805.t1.exon3Gcaud1805.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2042_length_7094_cov_4.903042 2811..2891 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1805.t1.intron1Gcaud1805.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2042_length_7094_cov_4.903042 410..2644 +
Gcaud1805.t1.intron2Gcaud1805.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2042_length_7094_cov_4.903042 2673..2810 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1805.t1.stop1Gcaud1805.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2042_length_7094_cov_4.903042 2889..2891 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1805.t1 ID=Gcaud1805.t1|Name=Gcaud1805.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=164bp
MAHVLSEAQRVEEFAELLNNDEYDDQERLRRLGNILREGHESLRVHYESS
CEEVDRLVEFCLTNGAVGSRITGAGWGGFTINLVPVQKKKVFLEVVKAKV
GVDAVIDIDPSAGGCIFAIHNVLGGSNRLCVISDVACSLQNTGKSASVFQ
RYNAPSIRVMLSR*
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spliced messenger RNA

>Gcaud1805.t1 ID=Gcaud1805.t1|Name=Gcaud1805.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=492bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:27..2891+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACACGTTTTATCAGAGGCACAGCGGGTGGAAGAATTTGCTGAGCT
TCTGAACAACGACGAATATGATGACCAGGAGAGGTTGCGGAGATTAGGAA
ACATACTGCGAGAGGGACATGAGTCGCTTCGGGTACATTACGAGTCCAGC
TGCGAGGAAGTTGACAGACTTGTCGAGTTCTGTCTTACCAATGGTGCAGT
CGGAAGCCGGATAACCGGAGCCGGATGGGGAGGTTTCACAATCAATCTGG
TCCCTGTTCAGAAAAAGAAGGTATTTCTCGAGGTTGTGAAAGCGAAAGTT
GGAGTAGATGCGGTTATCGACATCGACCCCTCTGCCGGGGGATGTATTTT
TGCAATTCATAATGTTCTTGGAGGATCAAACCGCCTGTGCGTCATCTCTG
ATGTTGCTTGTTCTTTGCAGAACACCGGAAAGAGCGCTTCTGTTTTCCAA
CGGTACAATGCCCCTTCAATTCGTGTCATGCTCAGCAGATGA
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protein sequence of Gcaud1805.t1

>Gcaud1805.t1 ID=Gcaud1805.t1|Name=Gcaud1805.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=164bp
MAHVLSEAQRVEEFAELLNNDEYDDQERLRRLGNILREGHESLRVHYESS
CEEVDRLVEFCLTNGAVGSRITGAGWGGFTINLVPVQKKKVFLEVVKAKV
GVDAVIDIDPSAGGCIFAIHNVLGGSNRLCVISDVACSLQNTGKSASVFQ
RYNAPSIRVMLSR*
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mRNA from alignment at NODE_2042_length_7094_cov_4.903042:27..2891+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1805.t1 ID=Gcaud1805.t1|Name=Gcaud1805.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2865bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:27..2891+ (Gracilaria caudata M_176_S67 male)
ATGGCACACGTTTTATCAGAGGCACAGCGGGTGGAAGAATTTGCTGAGCT
TCTGAACAACGACGAATATGATGACCAGGAGAGGTTGCGGAGATTAGGAA
ACATACTGCGAGAGGGACATGAGTCGCTTCGGGTACATTACGAGTCCAGC
TGCGAGGAAGTTGACAGACTTGTCGAGTTCTGTCTTACCAATGGTGCAGT
CGGAAGCCGGATAACCGGAGCCGGATGGGGAGGTTTCACAATCAATCTGG
TCCCTGTTCAGAAAAAGAAGGTATTTCTCGAGGTTGTGAAAGCGAAAGTT
GGAGTAGATGCGGTTATCGACATCGACCCCTCTGCCGGGGGATGTATTTT
TGCAATTCATAATGTTCTTGGAGGATCAAACCGGTAAGCACCACAACAGT
CCACCATAAAATGAAGATAAGGTCCTCTTTTTGGTAGAACATGCACCTAC
AAGGTCACAATGCATATCTTGAGGATCCTAGTACTTGCTCCGCCAAGATG
GGTGTCCTCATGTTCACGTAATGTGGCCTTCGTGGCGATGACCAAACTGT
TTTGTCAAAATCGTACCAGCGTGTATGTGTTGAGCAAGTGCGACAATACG
AAGGTACCATTCGCGACTATCAGAAGGCATTGTAATCGAACGATGCGCAG
CGGTTTTGGATTCGTTGTGTACTGGTCTTGTTCCAGAGGAAGAACAACTT
TGAGGCGCTGTCTATTTTCAAGCGTGTTGCCACTCGGTTTCCAGGTGTGA
GCAATGTGCATGCTGCCCTGGCGCTTGCTTTTTATGATCGCGGAGATATT
GTCGCCGCTGAGACTGAGTGGAGCGTTGTGGGTCGACTGAGACTGTTTGA
AGGCCAATCGttgtcgatggactggcaaagggatcattggaaatatcact
ggaaaggcaagttttagtccctattaactttgaggaaggtagtcatagag
caacaacacggcgatacgcgaagccgttgtggtcacgcctgtcaacagag
tatgaagaatgtacccgtcgtagttcaacaagagaagcagagtgacactg
tcgcagttgtatattagacatactcaatctctgcttcccctcggatcaca
tctcctgggaaggaggtaagtgtgctactgcaggcctggtgtgtttaaat
agtgtagaacactgtatcttaagatgcccTCGACGAAAGAGTTCAAAAGA
AATGGAAAcggtgctactgtggcacaaattgcgaaggattgtgaacacgt
tgttttccgatgctctctcacaaacgcttcgcgacgcgaacttctcgccc
gtctctctggcaggacatgccacacaatcatcggtaaaaactctgatccc
acataaaccgcacagagattcttggcctttctaaacagagaaagcttcat
ttgaagccttacttcaggatagtaatagaaacctgatgtccacaacaaag
aagaaAGACTTCAAAAGGCtgtgcttgcctccccttcgtgagcggcgggg
tgtgcttctgatagcatcaagaagtggcccgaacgaacactggccttcct
ggcgagagaacgcctttttacacagaggcactccacactaagttggaatg
atgaggcttgtgtgctcataaagagaGAGCGAGAGAAAGCCAGCCCTTCC
TTGATCAATAGTGCAAGTGGCCGCCGCGCGCAATCAAGACGCTGGACAAC
TTCCTACGTCTAATCCCACAATAATACAACGCAAATGAGCGTCTTTCCCC
CATTCAAGGGTAGCGTTCTAGAACACAACAGACCTTTTGATCTACCTTGC
CGAAAAAATTTATCAAAGCGCCAGCTCAGATTGTACGAAGGTAAGAGGGT
TAGCTTTCTCTTACGGAACCTTCCCTCTTATCATTCCCGTTCATAGACAA
AAAAGCCGTATTCCTCCTGTTCTTCCTTAACACATAACTGCGCCTGAGAC
CCGTTTGTTGCAACTCTGACGGTCATTCCGTATCATAACACTCTACATCA
TGATCATGGCACTGGCCTTTTATGCCGAAACTCGGCATTACATTTGCACT
TGCATCTGCAGACATCAGAAACAAACATCAAACATCATGCCTTAAGTTCT
TCCCTATGCACTGCATATGAAGGCGTGTAGTATGCAGAGGTCTGGCGTCA
TCCTGATGACAAGTGGAAACGAGCGAACGACAAGAAGCCTTCTTGAGAGA
AATAACTGGTGAAGATATCGTTCGCACAATTGGGGAGAAGCGGGTCGTAT
GGAAGGAAAATTAACCCTTCCACACTGTGGGAGGGTTAATCCACACCCTT
CAGCAGAATTCTTTTCGCGCTCACAGAACGTTTTCTTTTACCAAGGTAGA
ACCGTTCTGGTTGTAGATAAGACGTCCTCATCCAAAGAATTGCATTACAG
TAGCGGTCGCAATTCGCATGCAGCCTTTGTCTCTTTCTCACCAAGCTCCG
GTCGCACGAAACCCTACAAGCGCGTCAAAAACCTTCCGCAAGGTCCAGCT
TCTCGGTCCTAAAGCCCACTGAAAAAGCATATCCTTTCTGAAGATGGGTC
TAGCGAAAACTTGTTTTCTTGTTTCGTTTGTTCCAAGATCTACGTGAATC
GCGTTCACCAACACGTAGCCTGTGCGTCATCTCTGATGTTGCTTGTGTAC
GTTTGCCCATCACACGCTTTATCGCTTTGTACACGACCGCATGCCGACAA
TGCTCAACTCGGAACACTTGCCCCAACTGGAGTCTCACCTACATCAATAC
GTTGTCATCTTGTTGAACGAAAGGCACAACACAGTCTTTGCAGAACACCG
GAAAGAGCGCTTCTGTTTTCCAACGGTACAATGCCCCTTCAATTCGTGTC
ATGCTCAGCAGATGA
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Coding sequence (CDS) from alignment at NODE_2042_length_7094_cov_4.903042:27..2891+

>Gcaud1805.t1 ID=Gcaud1805.t1|Name=Gcaud1805.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=492bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:27..2891+ (Gracilaria caudata M_176_S67 male)
ATGGCACACGTTTTATCAGAGGCACAGCGGGTGGAAGAATTTGCTGAGCT
TCTGAACAACGACGAATATGATGACCAGGAGAGGTTGCGGAGATTAGGAA
ACATACTGCGAGAGGGACATGAGTCGCTTCGGGTACATTACGAGTCCAGC
TGCGAGGAAGTTGACAGACTTGTCGAGTTCTGTCTTACCAATGGTGCAGT
CGGAAGCCGGATAACCGGAGCCGGATGGGGAGGTTTCACAATCAATCTGG
TCCCTGTTCAGAAAAAGAAGGTATTTCTCGAGGTTGTGAAAGCGAAAGTT
GGAGTAGATGCGGTTATCGACATCGACCCCTCTGCCGGGGGATGTATTTT
TGCAATTCATAATGTTCTTGGAGGATCAAACCGCCTGTGCGTCATCTCTG
ATGTTGCTTGTTCTTTGCAGAACACCGGAAAGAGCGCTTCTGTTTTCCAA
CGGTACAATGCCCCTTCAATTCGTGTCATGCTCAGCAGATGA
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