Gcaud1806.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1806.t1
Unique NameGcaud1806.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2042_length_7094_cov_4.903042contigNODE_2042_length_7094_cov_4.903042:3845..4195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1806Gcaud1806Gracilaria caudata M_176_S67 malegeneNODE_2042_length_7094_cov_4.903042 3845..4195 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1806.t1.start1Gcaud1806.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2042_length_7094_cov_4.903042 3845..3847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1806.t1.CDS1Gcaud1806.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2042_length_7094_cov_4.903042 3845..4195 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1806.t1.exon1Gcaud1806.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2042_length_7094_cov_4.903042 3845..4195 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1806.t1.stop1Gcaud1806.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2042_length_7094_cov_4.903042 4193..4195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1806.t1Gcaud1806.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2042_length_7094_cov_4.903042 3845..4195 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1806.t1 ID=Gcaud1806.t1|Name=Gcaud1806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=117bp
MIRGDDGGYVFIDWEAAEIDYAITDIDTLSSLVFPVVDQQRINIGPYFRL
WEQHASPSELKNLWRCMNLRDELRIALETFESSVSEDVKPPMDSEELEQL
KWALTDIRIEIETRKA*
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spliced messenger RNA

>Gcaud1806.t1 ID=Gcaud1806.t1|Name=Gcaud1806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:3845..4195+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAGGGGCGATGATGGAGGTTATGTGTTTATTGATTGGGAAGCTGC
CGAAATCGACTATGCAATCACGGACATCGACACTCTTAGTTCCCTAGTAT
TTCCTGTCGTCGATCAACAGAGAATTAATATAGGACCATACTTCCGTTTA
TGGGAACAGCACGCATCCCCATCTGAACTCAAAAATTTGTGGCGTTGTAT
GAATCTCAGGGATGAGCTGCGGATCGCATTGGAAACATTTGAGTCATCAG
TTTCAGAGGATGTCAAACCGCCGATGGATAGTGAAGAGTTGGAACAGCTC
AAATGGGCCTTAACAGATATAAGGATAGAAATAGAGACCCGGAAAGCGTG
A
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protein sequence of Gcaud1806.t1

>Gcaud1806.t1 ID=Gcaud1806.t1|Name=Gcaud1806.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=117bp
MIRGDDGGYVFIDWEAAEIDYAITDIDTLSSLVFPVVDQQRINIGPYFRL
WEQHASPSELKNLWRCMNLRDELRIALETFESSVSEDVKPPMDSEELEQL
KWALTDIRIEIETRKA*
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mRNA from alignment at NODE_2042_length_7094_cov_4.903042:3845..4195+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1806.t1 ID=Gcaud1806.t1|Name=Gcaud1806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:3845..4195+ (Gracilaria caudata M_176_S67 male)
ATGATCAGGGGCGATGATGGAGGTTATGTGTTTATTGATTGGGAAGCTGC
CGAAATCGACTATGCAATCACGGACATCGACACTCTTAGTTCCCTAGTAT
TTCCTGTCGTCGATCAACAGAGAATTAATATAGGACCATACTTCCGTTTA
TGGGAACAGCACGCATCCCCATCTGAACTCAAAAATTTGTGGCGTTGTAT
GAATCTCAGGGATGAGCTGCGGATCGCATTGGAAACATTTGAGTCATCAG
TTTCAGAGGATGTCAAACCGCCGATGGATAGTGAAGAGTTGGAACAGCTC
AAATGGGCCTTAACAGATATAAGGATAGAAATAGAGACCCGGAAAGCGTG
A
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Coding sequence (CDS) from alignment at NODE_2042_length_7094_cov_4.903042:3845..4195+

>Gcaud1806.t1 ID=Gcaud1806.t1|Name=Gcaud1806.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=351bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:3845..4195+ (Gracilaria caudata M_176_S67 male)
ATGATCAGGGGCGATGATGGAGGTTATGTGTTTATTGATTGGGAAGCTGC
CGAAATCGACTATGCAATCACGGACATCGACACTCTTAGTTCCCTAGTAT
TTCCTGTCGTCGATCAACAGAGAATTAATATAGGACCATACTTCCGTTTA
TGGGAACAGCACGCATCCCCATCTGAACTCAAAAATTTGTGGCGTTGTAT
GAATCTCAGGGATGAGCTGCGGATCGCATTGGAAACATTTGAGTCATCAG
TTTCAGAGGATGTCAAACCGCCGATGGATAGTGAAGAGTTGGAACAGCTC
AAATGGGCCTTAACAGATATAAGGATAGAAATAGAGACCCGGAAAGCGTG
A
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