Gcaud1208.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1208.t1
Unique NameGcaud1208.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length285
Homology
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BLAST of Gcaud1208.t1 vs. uniprot
Match: A0A176VEP3_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VEP3_MARPO)

HSP 1 Score: 138 bits (347), Expect = 2.270e-36
Identity = 73/157 (46.50%), Postives = 100/157 (63.69%), Query Frame = 0 
Query:  123 PRFGAELESAKQFLRDRPAFNVLLVEKNGGFAFKFSDKDGRLASHNQVNTTCEFVRKLVLRNEQLTFVKTDGFIDVCSAILSKRYGALVQMQCKSFKGCFHVAAGDGRTDERMFEVVDLAVKVGRE-PSRADTRLKSHVEMLDVLEWIAQMRAMHNE 278
            P F  +L+S  Q+L  R   N+ LV KNGGFA KF+D+DGRLA    ++    FV++LV  +E+L  V+TDGFIDVCS  L+K      Q++ + F+G F +AAGD  TDE MF  V ++++VG    S A  RL SH EML+V++WI  +R   NE
Sbjct:   45 PDFSGQLKSITQYLSARRDRNLSLVVKNGGFAVKFTDEDGRLAKGVDIDAVIAFVQRLVADSEELISVQTDGFIDVCSGFLNKGTAIQCQLKERPFRGSFCIAAGDSGTDEAMFPFVPISIRVGMSGQSCATDRLSSHKEMLEVIQWIVYLRMDFNE 201
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BLAST of Gcaud1208.t1 vs. uniprot
Match: A0A176VV01_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VV01_MARPO)

HSP 1 Score: 63.2 bits (152), Expect = 1.930e-8
Identity = 42/99 (42.42%), Postives = 54/99 (54.55%), Query Frame = 0 
Query:   26 GVEQLGSIARARIIENIGQLALHLDMDGTLTAAGQPLCQRAIRVINELQK-LNVPVSCNTAQSNEYLLAAGGDVFMARVNELG--------LRVQHSDG 115
            GV QL      RI ENIG L++  D DGTL AAG  L ++  +++  L   L   V  NTAQ+ EY+   GG +F A+  ELG        LRV+H DG
Sbjct:   75 GVSQLKPDTVKRIQENIGNLSMIFDFDGTLVAAGAGLGEKDGQLMRCLVNVLEGAVGINTAQAPEYMADRGGSIFPAKAFELGHPKVQLERLRVEHMDG 173
The following BLAST results are available for this feature:
BLAST of Gcaud1208.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A176VEP3_MARPO2.270e-3646.50Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A176VV01_MARPO1.930e-842.42Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023214HAD superfamilyGENE3D3.40.50.1000coord: 46..247
e-value: 1.0E-12
score: 50.1
NoneNo IPR availableGENE3D3.90.1070.10coord: 121..201
e-value: 1.0E-12
score: 50.1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..284
IPR036412HAD-like superfamilySUPERFAMILY56784HAD-likecoord: 47..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2037_length_7110_cov_4.300328contigNODE_2037_length_7110_cov_4.300328:5888..6817 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1208.t1Gcaud1208.t1Gracilaria caudata M_176_S67 malemRNANODE_2037_length_7110_cov_4.300328 5888..6817 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1208.t1 ID=Gcaud1208.t1|Name=Gcaud1208.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MPRLMGQSTKLHLAAIVLSGFSFNYGVEQLGSIARARIIENIGQLALHLD
MDGTLTAAGQPLCQRAIRVINELQKLNVPVSCNTAQSNEYLLAAGGDVFM
ARVNELGLRVQHSDGNVVTTPPPRFGAELESAKQFLRDRPAFNVLLVEKN
GGFAFKFSDKDGRLASHNQVNTTCEFVRKLVLRNEQLTFVKTDGFIDVCS
AILSKRYGALVQMQCKSFKGCFHVAAGDGRTDERMFEVVDLAVKVGREPS
RADTRLKSHVEMLDVLEWIAQMRAMHNEFNHKDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD_sf
IPR036412HAD-like_sf