Gcaud1925.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1925.t1
Unique Name	Gcaud1925.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:20030..21031 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	57918.XP_004303342.1
PFAMs	AHSA1,Aha1_N
Max annot lvl	35493\|Streptophyta
GOs	GO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008047,GO:0008150,GO:0030234,GO:0031072,GO:0032781,GO:0043085,GO:0043462,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051087,GO:0051336,GO:0051345,GO:0051879,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0098772
Evalue	1.41e-42
EggNOG OGs	COG5580@1\|root,KOG2936@2759\|Eukaryota,37KPG@33090\|Viridiplantae,3GG7A@35493\|Streptophyta,4JIR0@91835\|fabids
Description	Activator of 90 kDa heat shock protein
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1925	Gcaud1925	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 20030..21031 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1925.t1.stop1	Gcaud1925.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 20030..20032 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1925.t1.CDS1	Gcaud1925.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 20030..21031 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1925.t1.exon1	Gcaud1925.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 20030..21031 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1925.t1.start1	Gcaud1925.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 21029..21031 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1925.t1	Gcaud1925.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 20030..21031 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:20030..21031-
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:20030..21031-

mRNA sequence

>Gcaud1925.t1 ID=Gcaud1925.t1|Name=Gcaud1925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=334bp
MALQGEGDPRWVVRERNDGRNVNGWHWEDKDVTSWAQQRIKQLLNASVCS
CGYGDTVVAVREVDSVEGDATLYNRKGVLKVLYDLKVVGKWSTDTDDEED
RSHGEFKFELFDEDPEIIATFDSKAKKDSAAKELFMRKVVPVIKEQCRIF
IKEMHEGAGQEVDGLRKPTRKKENETKVTDYLRTGMNQKTKVRKESHLTK
VVMKDVFICSAMDMYMALTDARRLEAITRCKTVSEAIVGGKQRLLNGVVN
ARFLRLQEGKQIVMEWKLESWGDDAAAGMSTIDIEEEDGKTEICVTVDGV
PKNMTSKTEGFWRVQVLQAMKVVMGWGSASKFL*

spliced messenger RNA

>Gcaud1925.t1 ID=Gcaud1925.t1|Name=Gcaud1925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:20030..21031- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTACAGGGAGAGGGTGACCCGCGATGGGTAGTTCGTGAACGAAA
CGACGGACGCAACGTAAATGGCTGGCATTGGGAGGATAAGGATGTCACCT
CATGGGCGCAGCAGAGAATCAAACAGCTTCTCAACGCCTCCGTGTGCTCG
TGTGGATACGGTGATACTGTTGTGGCTGTGAGAGAGGTTGATAGTGTGGA
GGGCGATGCCACTCTGTACAATAGAAAGGGAGTGCTCAAGGTACTGTACG
ACCTCAAAGTTGTGGGAAAATGGAGCACAGACACCGACGACGAAGAAGAC
CGCTCGCACGGCGAATTCAAGTTCGAGCTGTTCGACGAGGACCCCGAGAT
CATTGCCACATTCGATTCCAAGGCGAAGAAAGATTCTGCGGCAAAGGAGC
TATTTATGAGAAAGGTTGTGCCCGTAATCAAGGAGCAGTGTCGCATCTTC
ATCAAAGAAATGCACGAAGGAGCTGGCCAAGAAGTGGATGGGCTGCGCAA
ACCTACCAGGAAGAAGGAGAACGAGACTAAAGTGACTGACTACTTGCGCA
CGGGCATGAATCAGAAGACAAAGGTGCGAAAGGAAAGTCATTTGACAAAG
GTGGTGATGAAGGACGTTTTCATATGCTCAGCAATGGACATGTATATGGC
ACTGACAGACGCAAGACGACTGGAGGCTATCACGCGATGCAAAACGGTAT
CAGAAGCGATAGTAGGCGGCAAGCAGCGACTGCTAAACGGGGTGGTGAAC
GCGCGTTTTCTGCGGTTACAAGAGGGGAAGCAAATAGTGATGGAATGGAA
GTTGGAAAGTTGGGGCGATGATGCGGCGGCAGGTATGAGCACCATAGACA
TTGAAGAGGAGGATGGGAAAACAGAGATATGCGTCACTGTGGATGGTGTT
CCAAAGAACATGACGTCTAAAACTGAGGGATTCTGGCGAGTGCAGGTACT
GCAGGCCATGAAAGTGGTAATGGGGTGGGGAAGTGCAAGCAAGTTTTTGT
AA

protein sequence of Gcaud1925.t1

>Gcaud1925.t1 ID=Gcaud1925.t1|Name=Gcaud1925.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=334bp
MALQGEGDPRWVVRERNDGRNVNGWHWEDKDVTSWAQQRIKQLLNASVCS
CGYGDTVVAVREVDSVEGDATLYNRKGVLKVLYDLKVVGKWSTDTDDEED
RSHGEFKFELFDEDPEIIATFDSKAKKDSAAKELFMRKVVPVIKEQCRIF
IKEMHEGAGQEVDGLRKPTRKKENETKVTDYLRTGMNQKTKVRKESHLTK
VVMKDVFICSAMDMYMALTDARRLEAITRCKTVSEAIVGGKQRLLNGVVN
ARFLRLQEGKQIVMEWKLESWGDDAAAGMSTIDIEEEDGKTEICVTVDGV
PKNMTSKTEGFWRVQVLQAMKVVMGWGSASKFL*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:20030..21031-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1925.t1 ID=Gcaud1925.t1|Name=Gcaud1925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:20030..21031- (Gracilaria caudata M_176_S67 male)
ATGGCCTTACAGGGAGAGGGTGACCCGCGATGGGTAGTTCGTGAACGAAA
CGACGGACGCAACGTAAATGGCTGGCATTGGGAGGATAAGGATGTCACCT
CATGGGCGCAGCAGAGAATCAAACAGCTTCTCAACGCCTCCGTGTGCTCG
TGTGGATACGGTGATACTGTTGTGGCTGTGAGAGAGGTTGATAGTGTGGA
GGGCGATGCCACTCTGTACAATAGAAAGGGAGTGCTCAAGGTACTGTACG
ACCTCAAAGTTGTGGGAAAATGGAGCACAGACACCGACGACGAAGAAGAC
CGCTCGCACGGCGAATTCAAGTTCGAGCTGTTCGACGAGGACCCCGAGAT
CATTGCCACATTCGATTCCAAGGCGAAGAAAGATTCTGCGGCAAAGGAGC
TATTTATGAGAAAGGTTGTGCCCGTAATCAAGGAGCAGTGTCGCATCTTC
ATCAAAGAAATGCACGAAGGAGCTGGCCAAGAAGTGGATGGGCTGCGCAA
ACCTACCAGGAAGAAGGAGAACGAGACTAAAGTGACTGACTACTTGCGCA
CGGGCATGAATCAGAAGACAAAGGTGCGAAAGGAAAGTCATTTGACAAAG
GTGGTGATGAAGGACGTTTTCATATGCTCAGCAATGGACATGTATATGGC
ACTGACAGACGCAAGACGACTGGAGGCTATCACGCGATGCAAAACGGTAT
CAGAAGCGATAGTAGGCGGCAAGCAGCGACTGCTAAACGGGGTGGTGAAC
GCGCGTTTTCTGCGGTTACAAGAGGGGAAGCAAATAGTGATGGAATGGAA
GTTGGAAAGTTGGGGCGATGATGCGGCGGCAGGTATGAGCACCATAGACA
TTGAAGAGGAGGATGGGAAAACAGAGATATGCGTCACTGTGGATGGTGTT
CCAAAGAACATGACGTCTAAAACTGAGGGATTCTGGCGAGTGCAGGTACT
GCAGGCCATGAAAGTGGTAATGGGGTGGGGAAGTGCAAGCAAGTTTTTGT
AA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:20030..21031-

>Gcaud1925.t1 ID=Gcaud1925.t1|Name=Gcaud1925.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1002bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:20030..21031- (Gracilaria caudata M_176_S67 male)
ATGGCCTTACAGGGAGAGGGTGACCCGCGATGGGTAGTTCGTGAACGAAA
CGACGGACGCAACGTAAATGGCTGGCATTGGGAGGATAAGGATGTCACCT
CATGGGCGCAGCAGAGAATCAAACAGCTTCTCAACGCCTCCGTGTGCTCG
TGTGGATACGGTGATACTGTTGTGGCTGTGAGAGAGGTTGATAGTGTGGA
GGGCGATGCCACTCTGTACAATAGAAAGGGAGTGCTCAAGGTACTGTACG
ACCTCAAAGTTGTGGGAAAATGGAGCACAGACACCGACGACGAAGAAGAC
CGCTCGCACGGCGAATTCAAGTTCGAGCTGTTCGACGAGGACCCCGAGAT
CATTGCCACATTCGATTCCAAGGCGAAGAAAGATTCTGCGGCAAAGGAGC
TATTTATGAGAAAGGTTGTGCCCGTAATCAAGGAGCAGTGTCGCATCTTC
ATCAAAGAAATGCACGAAGGAGCTGGCCAAGAAGTGGATGGGCTGCGCAA
ACCTACCAGGAAGAAGGAGAACGAGACTAAAGTGACTGACTACTTGCGCA
CGGGCATGAATCAGAAGACAAAGGTGCGAAAGGAAAGTCATTTGACAAAG
GTGGTGATGAAGGACGTTTTCATATGCTCAGCAATGGACATGTATATGGC
ACTGACAGACGCAAGACGACTGGAGGCTATCACGCGATGCAAAACGGTAT
CAGAAGCGATAGTAGGCGGCAAGCAGCGACTGCTAAACGGGGTGGTGAAC
GCGCGTTTTCTGCGGTTACAAGAGGGGAAGCAAATAGTGATGGAATGGAA
GTTGGAAAGTTGGGGCGATGATGCGGCGGCAGGTATGAGCACCATAGACA
TTGAAGAGGAGGATGGGAAAACAGAGATATGCGTCACTGTGGATGGTGTT
CCAAAGAACATGACGTCTAAAACTGAGGGATTCTGGCGAGTGCAGGTACT
GCAGGCCATGAAAGTGGTAATGGGGTGGGGAAGTGCAAGCAAGTTTTTGT
AA