Gcaud1926.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1926.t1
Unique Name	Gcaud1926.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	171

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:21544..22161 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703152.1
Preferred name	SBA1
PFAMs	CS
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00672
KEGG ko	ko:K10858,ko:K13127,ko:K15730
KEGG Reaction	R02265
KEGG Pathway	ko00590,ko01100,ko03430,ko03460,map00590,map01100,map03430,map03460
KEGG Module	M00295
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006457,GO:0007275,GO:0008150,GO:0009506,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010449,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010648,GO:0010817,GO:0016020,GO:0019219,GO:0019222,GO:0022622,GO:0023051,GO:0023057,GO:0030054,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032879,GO:0033043,GO:0033044,GO:0035266,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0048364,GO:0048507,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051052,GO:0051054,GO:0051087,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051338,GO:0051972,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071944,GO:0080036,GO:0080037,GO:0080090,GO:0099402,GO:1904356,GO:1904358,GO:2000012,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Evalue	5.63e-49
EggNOG OGs	KOG3158@1\|root,KOG3158@2759\|Eukaryota
EC	5.3.99.3
Description	prostaglandin-E synthase activity
COG category	K
BRITE	ko00000,ko00001,ko00002,ko01000,ko03041,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1926	Gcaud1926	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 21544..22161 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1926.t1	Gcaud1926.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 21544..22161 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1926.t1.start1	Gcaud1926.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 21544..21546 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1926.t1.CDS1	Gcaud1926.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 21544..21560 +
Gcaud1926.t1.CDS2	Gcaud1926.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 21666..22161 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1926.t1.exon1	Gcaud1926.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 21544..21560 +
Gcaud1926.t1.exon2	Gcaud1926.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 21666..22161 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1926.t1.intron1	Gcaud1926.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_105_length_50300_cov_4.471768 21561..21665 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1926.t1.stop1	Gcaud1926.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 22159..22161 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:21544..22161+
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:21544..22161+

mRNA sequence

>Gcaud1926.t1 ID=Gcaud1926.t1|Name=Gcaud1926.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MRQDMSSASKVLTPEFLWAQRKDQVYLTINVPNVKKAETTIKVTDDGHVY
FKGPGGAVGHEAEYILDINLFKPIKADQSKYKVTARTVFFKIVKADSGPY
WDRLLKPEGRNIHCKIDWENWKDEDEDEDEYSFGSQFADSKDLQDMDFGS
GGSTSDEEDEANPAPKASDK*

spliced messenger RNA

>Gcaud1926.t1 ID=Gcaud1926.t1|Name=Gcaud1926.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:21544..22161+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCAAGACATGAGTAGTGCGTCCAAGGTGCTCACGCCAGAGTTTCT
TTGGGCACAACGTAAGGATCAGGTATACCTGACCATCAACGTTCCCAACG
TAAAGAAAGCCGAGACAACCATCAAGGTCACTGATGATGGTCACGTGTAT
TTTAAGGGGCCCGGCGGTGCTGTGGGACACGAAGCAGAGTACATATTGGA
CATAAATCTCTTCAAACCAATCAAGGCCGACCAATCGAAGTACAAGGTTA
CCGCCCGTACCGTGTTCTTTAAGATTGTCAAGGCCGATTCCGGTCCTTAC
TGGGATCGCCTACTCAAACCTGAGGGGCGTAACATTCACTGCAAAATTGA
CTGGGAGAACTGGAAGGATGAGGACGAAGATGAGGATGAATATTCTTTCG
GCTCTCAGTTTGCGGATAGTAAGGACTTGCAAGACATGGACTTTGGTTCA
GGCGGTTCCACATCTGACGAAGAGGACGAGGCAAACCCCGCACCGAAAGC
TTCGGACAAGTAA

protein sequence of Gcaud1926.t1

>Gcaud1926.t1 ID=Gcaud1926.t1|Name=Gcaud1926.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MRQDMSSASKVLTPEFLWAQRKDQVYLTINVPNVKKAETTIKVTDDGHVY
FKGPGGAVGHEAEYILDINLFKPIKADQSKYKVTARTVFFKIVKADSGPY
WDRLLKPEGRNIHCKIDWENWKDEDEDEDEYSFGSQFADSKDLQDMDFGS
GGSTSDEEDEANPAPKASDK*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:21544..22161+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1926.t1 ID=Gcaud1926.t1|Name=Gcaud1926.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=618bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:21544..22161+ (Gracilaria caudata M_176_S67 male)
ATGCGTCAAGACATGAGGTGAGTTCATCCTTCTTGTCCTTGCCTACATGC
AATCATTTCTATAGAACACCTTGTACTGACAAAATGCTTATCCAAAACTG
CAACTCGTCTTGATTGCCTCAGTAGTGCGTCCAAGGTGCTCACGCCAGAG
TTTCTTTGGGCACAACGTAAGGATCAGGTATACCTGACCATCAACGTTCC
CAACGTAAAGAAAGCCGAGACAACCATCAAGGTCACTGATGATGGTCACG
TGTATTTTAAGGGGCCCGGCGGTGCTGTGGGACACGAAGCAGAGTACATA
TTGGACATAAATCTCTTCAAACCAATCAAGGCCGACCAATCGAAGTACAA
GGTTACCGCCCGTACCGTGTTCTTTAAGATTGTCAAGGCCGATTCCGGTC
CTTACTGGGATCGCCTACTCAAACCTGAGGGGCGTAACATTCACTGCAAA
ATTGACTGGGAGAACTGGAAGGATGAGGACGAAGATGAGGATGAATATTC
TTTCGGCTCTCAGTTTGCGGATAGTAAGGACTTGCAAGACATGGACTTTG
GTTCAGGCGGTTCCACATCTGACGAAGAGGACGAGGCAAACCCCGCACCG
AAAGCTTCGGACAAGTAA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:21544..22161+

>Gcaud1926.t1 ID=Gcaud1926.t1|Name=Gcaud1926.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:21544..22161+ (Gracilaria caudata M_176_S67 male)
ATGCGTCAAGACATGAGTAGTGCGTCCAAGGTGCTCACGCCAGAGTTTCT
TTGGGCACAACGTAAGGATCAGGTATACCTGACCATCAACGTTCCCAACG
TAAAGAAAGCCGAGACAACCATCAAGGTCACTGATGATGGTCACGTGTAT
TTTAAGGGGCCCGGCGGTGCTGTGGGACACGAAGCAGAGTACATATTGGA
CATAAATCTCTTCAAACCAATCAAGGCCGACCAATCGAAGTACAAGGTTA
CCGCCCGTACCGTGTTCTTTAAGATTGTCAAGGCCGATTCCGGTCCTTAC
TGGGATCGCCTACTCAAACCTGAGGGGCGTAACATTCACTGCAAAATTGA
CTGGGAGAACTGGAAGGATGAGGACGAAGATGAGGATGAATATTCTTTCG
GCTCTCAGTTTGCGGATAGTAAGGACTTGCAAGACATGGACTTTGGTTCA
GGCGGTTCCACATCTGACGAAGAGGACGAGGCAAACCCCGCACCGAAAGC
TTCGGACAAGTAA