Gcaud1927.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1927.t1
Unique Name	Gcaud1927.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	257

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:22249..23019 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_07108T0
Preferred name	BUD32
PFAMs	APH,Kdo,Pkinase
Max annot lvl	4751\|Fungi
KEGG ko	ko:K08851
GOs	GO:0000003,GO:0000166,GO:0000278,GO:0000281,GO:0000282,GO:0000408,GO:0000722,GO:0000723,GO:0000910,GO:0002949,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007163,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019954,GO:0022402,GO:0030010,GO:0030154,GO:0030435,GO:0030436,GO:0030447,GO:0030448,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032200,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0040007,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043934,GO:0043936,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0060249,GO:0060255,GO:0061640,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	8.51e-49
EggNOG OGs	COG3642@1\|root,KOG3087@2759\|Eukaryota,38E5H@33154\|Opisthokonta,3NVEV@4751\|Fungi,1GWXG@112252\|Fungi incertae sedis
EC	2.7.11.1
Description	RIO1 family
COG category	T
BRITE	ko00000,ko01000,ko01001,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1927	Gcaud1927	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 22249..23019 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1927.t1.stop1	Gcaud1927.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 22249..22251 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1927.t1.CDS1	Gcaud1927.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 22249..23019 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1927.t1.exon1	Gcaud1927.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 22249..23019 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1927.t1.start1	Gcaud1927.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 23017..23019 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1927.t1	Gcaud1927.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 22249..23019 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:22249..23019-
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:22249..23019-

mRNA sequence

>Gcaud1927.t1 ID=Gcaud1927.t1|Name=Gcaud1927.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=257bp
MPLNADTNVFTVSDSTKTPLKRQAEESQIQATAKKVMRTDAQSDVKDVKE
KELSRGAEAVVSLVKFLGRKAIQKRRFPKRYRHPELDAKLTTRRLQQEAR
VLLRLRKAGIRVPAVYSLDVESGLLIMECVEGSTLKQFLQTSGQVGEDVM
QKAGRAVAKMHKSEIVHGDLTTGNIMVEDDQVCIIDFGLSSGNGTEEDLA
VDLYVLERAVISAHSEKAQPLNEAFLKAYAEELGRPAVLKRLEEVRARGR
KRDMVG*

spliced messenger RNA

>Gcaud1927.t1 ID=Gcaud1927.t1|Name=Gcaud1927.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:22249..23019- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTGAATGCGGACACTAACGTTTTCACAGTATCTGATTCGACGAA
GACTCCGCTGAAGAGACAGGCTGAGGAAAGCCAAATACAAGCAACAGCGA
AGAAAGTAATGCGCACTGATGCCCAATCTGACGTAAAAGATGTGAAAGAG
AAAGAACTATCACGAGGCGCCGAAGCCGTAGTGTCACTCGTAAAGTTTTT
GGGTCGCAAGGCAATCCAAAAGAGAAGATTTCCAAAACGATATCGTCATC
CAGAACTGGATGCGAAGCTGACAACACGTCGACTTCAACAGGAGGCACGA
GTCTTGTTACGACTCCGAAAAGCAGGGATCAGAGTTCCAGCTGTATACAG
CTTGGATGTAGAGTCTGGTTTACTAATAATGGAATGCGTGGAAGGCTCTA
CTCTAAAGCAATTTCTGCAAACTAGTGGGCAGGTCGGTGAAGACGTGATG
CAGAAGGCAGGGCGAGCAGTAGCAAAGATGCATAAAAGCGAAATCGTTCA
CGGAGACCTGACGACGGGAAATATTATGGTCGAGGATGACCAAGTGTGCA
TCATTGACTTTGGCTTGAGCAGCGGTAACGGAACGGAGGAAGATCTGGCT
GTTGACCTATACGTTTTGGAACGAGCGGTAATATCAGCGCATTCTGAAAA
GGCGCAGCCATTAAACGAAGCTTTTCTGAAAGCGTATGCCGAAGAACTCG
GTAGACCAGCGGTACTGAAGCGATTGGAAGAAGTTAGGGCGCGTGGAAGG
AAGCGTGACATGGTAGGGTAG

protein sequence of Gcaud1927.t1

>Gcaud1927.t1 ID=Gcaud1927.t1|Name=Gcaud1927.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MPLNADTNVFTVSDSTKTPLKRQAEESQIQATAKKVMRTDAQSDVKDVKE
KELSRGAEAVVSLVKFLGRKAIQKRRFPKRYRHPELDAKLTTRRLQQEAR
VLLRLRKAGIRVPAVYSLDVESGLLIMECVEGSTLKQFLQTSGQVGEDVM
QKAGRAVAKMHKSEIVHGDLTTGNIMVEDDQVCIIDFGLSSGNGTEEDLA
VDLYVLERAVISAHSEKAQPLNEAFLKAYAEELGRPAVLKRLEEVRARGR
KRDMVG*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:22249..23019-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1927.t1 ID=Gcaud1927.t1|Name=Gcaud1927.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:22249..23019- (Gracilaria caudata M_176_S67 male)
ATGCCTCTGAATGCGGACACTAACGTTTTCACAGTATCTGATTCGACGAA
GACTCCGCTGAAGAGACAGGCTGAGGAAAGCCAAATACAAGCAACAGCGA
AGAAAGTAATGCGCACTGATGCCCAATCTGACGTAAAAGATGTGAAAGAG
AAAGAACTATCACGAGGCGCCGAAGCCGTAGTGTCACTCGTAAAGTTTTT
GGGTCGCAAGGCAATCCAAAAGAGAAGATTTCCAAAACGATATCGTCATC
CAGAACTGGATGCGAAGCTGACAACACGTCGACTTCAACAGGAGGCACGA
GTCTTGTTACGACTCCGAAAAGCAGGGATCAGAGTTCCAGCTGTATACAG
CTTGGATGTAGAGTCTGGTTTACTAATAATGGAATGCGTGGAAGGCTCTA
CTCTAAAGCAATTTCTGCAAACTAGTGGGCAGGTCGGTGAAGACGTGATG
CAGAAGGCAGGGCGAGCAGTAGCAAAGATGCATAAAAGCGAAATCGTTCA
CGGAGACCTGACGACGGGAAATATTATGGTCGAGGATGACCAAGTGTGCA
TCATTGACTTTGGCTTGAGCAGCGGTAACGGAACGGAGGAAGATCTGGCT
GTTGACCTATACGTTTTGGAACGAGCGGTAATATCAGCGCATTCTGAAAA
GGCGCAGCCATTAAACGAAGCTTTTCTGAAAGCGTATGCCGAAGAACTCG
GTAGACCAGCGGTACTGAAGCGATTGGAAGAAGTTAGGGCGCGTGGAAGG
AAGCGTGACATGGTAGGGTAG

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:22249..23019-

>Gcaud1927.t1 ID=Gcaud1927.t1|Name=Gcaud1927.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=771bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:22249..23019- (Gracilaria caudata M_176_S67 male)
ATGCCTCTGAATGCGGACACTAACGTTTTCACAGTATCTGATTCGACGAA
GACTCCGCTGAAGAGACAGGCTGAGGAAAGCCAAATACAAGCAACAGCGA
AGAAAGTAATGCGCACTGATGCCCAATCTGACGTAAAAGATGTGAAAGAG
AAAGAACTATCACGAGGCGCCGAAGCCGTAGTGTCACTCGTAAAGTTTTT
GGGTCGCAAGGCAATCCAAAAGAGAAGATTTCCAAAACGATATCGTCATC
CAGAACTGGATGCGAAGCTGACAACACGTCGACTTCAACAGGAGGCACGA
GTCTTGTTACGACTCCGAAAAGCAGGGATCAGAGTTCCAGCTGTATACAG
CTTGGATGTAGAGTCTGGTTTACTAATAATGGAATGCGTGGAAGGCTCTA
CTCTAAAGCAATTTCTGCAAACTAGTGGGCAGGTCGGTGAAGACGTGATG
CAGAAGGCAGGGCGAGCAGTAGCAAAGATGCATAAAAGCGAAATCGTTCA
CGGAGACCTGACGACGGGAAATATTATGGTCGAGGATGACCAAGTGTGCA
TCATTGACTTTGGCTTGAGCAGCGGTAACGGAACGGAGGAAGATCTGGCT
GTTGACCTATACGTTTTGGAACGAGCGGTAATATCAGCGCATTCTGAAAA
GGCGCAGCCATTAAACGAAGCTTTTCTGAAAGCGTATGCCGAAGAACTCG
GTAGACCAGCGGTACTGAAGCGATTGGAAGAAGTTAGGGCGCGTGGAAGG
AAGCGTGACATGGTAGGGTAG