Gcaud2194.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2194.t1
Unique Name	Gcaud2194.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:37823..38740 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708527.1
PFAMs	Ribosomal_L3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02906
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
Evalue	9.79e-74
EggNOG OGs	COG0087@1\|root,KOG3141@2759\|Eukaryota
Description	structural constituent of ribosome
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2194	Gcaud2194	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 37823..38740 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2194.t1	Gcaud2194.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 37823..38740 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2194.t1.stop1	Gcaud2194.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 37823..37825 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2194.t1.CDS1	Gcaud2194.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 37823..37829 -
Gcaud2194.t1.CDS2	Gcaud2194.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 37899..38740 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2194.t1.exon1	Gcaud2194.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 37823..37829 -
Gcaud2194.t1.exon2	Gcaud2194.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 37899..38740 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2194.t1.intron1	Gcaud2194.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_19_length_78712_cov_4.326007 37830..37898 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2194.t1.start1	Gcaud2194.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 38738..38740 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:37823..38740-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:37823..38740-

mRNA sequence

>Gcaud2194.t1 ID=Gcaud2194.t1|Name=Gcaud2194.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=283bp
MLRSLRAQWRRIGRSLCTSLSDAQPTRTLPGFSGEFRPCGVLARKVGMMS
LWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKT
KKAHRYHCAKAGVEPKHKLTEFGVHEMFKLDVGTEIRANHFSVGQLVDVT
GTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKK
MAGRMGNERVTVHNLMVYRVDCNRNLIYVRGAVPGNSGNWVRVRDAVKKL
RRNEQAPPALRMSTDGIIEWRKKGVVEAIEYM*

spliced messenger RNA

>Gcaud2194.t1 ID=Gcaud2194.t1|Name=Gcaud2194.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:37823..38740- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAGATCATTGCGAGCACAATGGCGACGGATAGGCCGCTCTCTCTG
TACCTCGCTCTCTGATGCACAACCAACAAGAACACTGCCCGGATTCAGCG
GAGAGTTTCGACCATGCGGCGTGCTAGCACGCAAAGTAGGAATGATGAGT
CTGTGGGATGCAGAAGGAACGCGTCATCCGATCACAGTTCTTTGCGTTGA
CCGATGTCATGTCATCAGTGTTGCTCCTCCAAATCCAAACGACCATCGAC
AACGGTGGCGAATTCAGGTCGGAGCCGGTCCAAAACGACCGTATAAAACG
AAGAAAGCTCATCGATATCATTGCGCAAAAGCTGGCGTTGAACCAAAACA
CAAGCTGACTGAATTTGGAGTGCATGAGATGTTCAAACTAGATGTTGGTA
CCGAGATTCGTGCCAATCATTTCTCGGTGGGGCAGCTTGTGGATGTCACG
GGGACATCCATAGGAAAAGGAACGCAGGGCGTGATGAAGCGCTGGGGTTT
CTCTGGAGCTCCTGCCACCCATGGTACTAGCAAGACGCATCGGAAAGGAG
GTTCTATTGGTATGTCTACAAAACCGGGGCGTGTGTTTAAAGGGAAGAAA
ATGGCTGGTCGTATGGGTAACGAAAGGGTTACTGTGCACAATTTAATGGT
GTATCGCGTCGATTGTAATCGTAATCTTATCTATGTGCGTGGAGCTGTAC
CAGGAAACTCGGGCAATTGGGTTCGAGTAAGAGATGCGGTTAAGAAGTTG
CGAAGAAACGAACAAGCGCCTCCTGCTTTGCGAATGAGTACGGACGGCAT
AATCGAGTGGAGAAAAAAAGGCGTGGTGGAAGCTATTGAATACATGTAA

protein sequence of Gcaud2194.t1

>Gcaud2194.t1 ID=Gcaud2194.t1|Name=Gcaud2194.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MLRSLRAQWRRIGRSLCTSLSDAQPTRTLPGFSGEFRPCGVLARKVGMMS
LWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKT
KKAHRYHCAKAGVEPKHKLTEFGVHEMFKLDVGTEIRANHFSVGQLVDVT
GTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKK
MAGRMGNERVTVHNLMVYRVDCNRNLIYVRGAVPGNSGNWVRVRDAVKKL
RRNEQAPPALRMSTDGIIEWRKKGVVEAIEYM*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:37823..38740-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2194.t1 ID=Gcaud2194.t1|Name=Gcaud2194.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:37823..38740- (Gracilaria caudata M_176_S67 male)
ATGCTCAGATCATTGCGAGCACAATGGCGACGGATAGGCCGCTCTCTCTG
TACCTCGCTCTCTGATGCACAACCAACAAGAACACTGCCCGGATTCAGCG
GAGAGTTTCGACCATGCGGCGTGCTAGCACGCAAAGTAGGAATGATGAGT
CTGTGGGATGCAGAAGGAACGCGTCATCCGATCACAGTTCTTTGCGTTGA
CCGATGTCATGTCATCAGTGTTGCTCCTCCAAATCCAAACGACCATCGAC
AACGGTGGCGAATTCAGGTCGGAGCCGGTCCAAAACGACCGTATAAAACG
AAGAAAGCTCATCGATATCATTGCGCAAAAGCTGGCGTTGAACCAAAACA
CAAGCTGACTGAATTTGGAGTGCATGAGATGTTCAAACTAGATGTTGGTA
CCGAGATTCGTGCCAATCATTTCTCGGTGGGGCAGCTTGTGGATGTCACG
GGGACATCCATAGGAAAAGGAACGCAGGGCGTGATGAAGCGCTGGGGTTT
CTCTGGAGCTCCTGCCACCCATGGTACTAGCAAGACGCATCGGAAAGGAG
GTTCTATTGGTATGTCTACAAAACCGGGGCGTGTGTTTAAAGGGAAGAAA
ATGGCTGGTCGTATGGGTAACGAAAGGGTTACTGTGCACAATTTAATGGT
GTATCGCGTCGATTGTAATCGTAATCTTATCTATGTGCGTGGAGCTGTAC
CAGGAAACTCGGGCAATTGGGTTCGAGTAAGAGATGCGGTTAAGAAGTTG
CGAAGAAACGAACAAGCGCCTCCTGCTTTGCGAATGAGTACGGACGGCAT
AATCGAGTGGAGAAAAAAAGGCGTGGTGGAAGCTATTGAATAGTGCAAAC
CAGAACGCTAGAACGCTACCCACGATTGTGAACTCGGCATTGCCGTCGGT
CTAGAGTGAAGCATGTAA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:37823..38740-

>Gcaud2194.t1 ID=Gcaud2194.t1|Name=Gcaud2194.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=849bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:37823..38740- (Gracilaria caudata M_176_S67 male)
ATGCTCAGATCATTGCGAGCACAATGGCGACGGATAGGCCGCTCTCTCTG
TACCTCGCTCTCTGATGCACAACCAACAAGAACACTGCCCGGATTCAGCG
GAGAGTTTCGACCATGCGGCGTGCTAGCACGCAAAGTAGGAATGATGAGT
CTGTGGGATGCAGAAGGAACGCGTCATCCGATCACAGTTCTTTGCGTTGA
CCGATGTCATGTCATCAGTGTTGCTCCTCCAAATCCAAACGACCATCGAC
AACGGTGGCGAATTCAGGTCGGAGCCGGTCCAAAACGACCGTATAAAACG
AAGAAAGCTCATCGATATCATTGCGCAAAAGCTGGCGTTGAACCAAAACA
CAAGCTGACTGAATTTGGAGTGCATGAGATGTTCAAACTAGATGTTGGTA
CCGAGATTCGTGCCAATCATTTCTCGGTGGGGCAGCTTGTGGATGTCACG
GGGACATCCATAGGAAAAGGAACGCAGGGCGTGATGAAGCGCTGGGGTTT
CTCTGGAGCTCCTGCCACCCATGGTACTAGCAAGACGCATCGGAAAGGAG
GTTCTATTGGTATGTCTACAAAACCGGGGCGTGTGTTTAAAGGGAAGAAA
ATGGCTGGTCGTATGGGTAACGAAAGGGTTACTGTGCACAATTTAATGGT
GTATCGCGTCGATTGTAATCGTAATCTTATCTATGTGCGTGGAGCTGTAC
CAGGAAACTCGGGCAATTGGGTTCGAGTAAGAGATGCGGTTAAGAAGTTG
CGAAGAAACGAACAAGCGCCTCCTGCTTTGCGAATGAGTACGGACGGCAT
AATCGAGTGGAGAAAAAAAGGCGTGGTGGAAGCTATTGAATACATGTAA