Gcaud2183.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2183.t1
Unique Name	Gcaud2183.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:7419..8279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707731.1
PFAMs	PQ-loop
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09660
GOs	GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	4.58e-51
EggNOG OGs	KOG3211@1\|root,KOG3211@2759\|Eukaryota
Description	dolichol-linked oligosaccharide biosynthetic process
COG category	S
BRITE	ko00000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2183	Gcaud2183	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 7419..8279 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2183.t1.start1	Gcaud2183.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 7419..7421 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2183.t1.CDS1	Gcaud2183.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 7419..8279 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2183.t1.exon1	Gcaud2183.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 7419..8279 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2183.t1.stop1	Gcaud2183.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 8277..8279 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2183.t1	Gcaud2183.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 7419..8279 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:7419..8279+
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:7419..8279+

mRNA sequence

>Gcaud2183.t1 ID=Gcaud2183.t1|Name=Gcaud2183.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=287bp
MPSRPSERIPVVDRKPAPALTAMEGVEVDAMSALEGSWQHAATAFVHRVL
PPVCPRPASVLRLPLLLLSDSVCLRATLSLAIGFAIVLFAGLIKLPQIAT
IVSKRSVAGLTVTTFLVETFGYTYNLAAHFRQDYPLSTYGDFFVLIFQNY
VILYLFFMYSAAPAKGVLIIIAYAAALALMCSPYFPLPILQLMTLGNVMV
VVLGRTPQIYANYVNKSTGALSIFTCWGIFLGALARIFTTLQDVDSVNIL
LGYLASATLNGTIAFQTIYYNYIAKPAPEQKLKKSQ*

spliced messenger RNA

>Gcaud2183.t1 ID=Gcaud2183.t1|Name=Gcaud2183.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:7419..8279+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCCCGCCCTTCAGAGCGTATCCCAGTCGTCGATCGTAAACCCGC
CCCCGCACTTACCGCGATGGAAGGTGTGGAAGTGGACGCCATGAGCGCGC
TCGAGGGCTCGTGGCAGCACGCCGCCACCGCCTTCGTGCACCGCGTGCTT
CCGCCCGTGTGTCCGCGCCCCGCCTCCGTCCTCCGTTTGCCGCTGTTGCT
GCTGTCCGACTCCGTCTGTCTTCGCGCCACGCTCTCGCTCGCCATCGGCT
TCGCAATCGTGCTCTTCGCCGGTCTCATCAAGCTGCCGCAGATCGCCACC
ATCGTGTCCAAGCGTTCTGTCGCCGGTCTCACCGTCACCACCTTTCTCGT
CGAGACCTTTGGCTACACCTACAACCTGGCCGCCCATTTCCGCCAGGACT
ATCCCTTGTCCACGTACGGTGACTTCTTCGTGCTCATTTTTCAGAACTAT
GTCATCCTCTATCTGTTCTTCATGTACTCGGCGGCGCCGGCGAAGGGCGT
GCTCATTATTATCGCGTACGCCGCCGCCCTTGCGCTCATGTGCAGTCCGT
ACTTTCCGCTCCCCATTCTGCAGCTCATGACGCTTGGAAATGTTATGGTC
GTCGTGCTGGGAAGAACGCCCCAGATCTACGCTAACTACGTCAACAAGTC
TACTGGCGCCCTCAGCATTTTCACCTGCTGGGGCATCTTTCTCGGCGCAC
TTGCCAGAATATTCACCACTCTGCAGGACGTTGACAGTGTCAACATCCTT
CTCGGCTATCTCGCGTCTGCCACCCTCAACGGCACAATAGCCTTTCAAAC
CATCTACTACAACTACATTGCGAAACCCGCCCCCGAACAAAAGCTCAAAA
AGTCCCAGTAG

protein sequence of Gcaud2183.t1

>Gcaud2183.t1 ID=Gcaud2183.t1|Name=Gcaud2183.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MPSRPSERIPVVDRKPAPALTAMEGVEVDAMSALEGSWQHAATAFVHRVL
PPVCPRPASVLRLPLLLLSDSVCLRATLSLAIGFAIVLFAGLIKLPQIAT
IVSKRSVAGLTVTTFLVETFGYTYNLAAHFRQDYPLSTYGDFFVLIFQNY
VILYLFFMYSAAPAKGVLIIIAYAAALALMCSPYFPLPILQLMTLGNVMV
VVLGRTPQIYANYVNKSTGALSIFTCWGIFLGALARIFTTLQDVDSVNIL
LGYLASATLNGTIAFQTIYYNYIAKPAPEQKLKKSQ*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:7419..8279+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2183.t1 ID=Gcaud2183.t1|Name=Gcaud2183.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:7419..8279+ (Gracilaria caudata M_176_S67 male)
ATGCCCTCCCGCCCTTCAGAGCGTATCCCAGTCGTCGATCGTAAACCCGC
CCCCGCACTTACCGCGATGGAAGGTGTGGAAGTGGACGCCATGAGCGCGC
TCGAGGGCTCGTGGCAGCACGCCGCCACCGCCTTCGTGCACCGCGTGCTT
CCGCCCGTGTGTCCGCGCCCCGCCTCCGTCCTCCGTTTGCCGCTGTTGCT
GCTGTCCGACTCCGTCTGTCTTCGCGCCACGCTCTCGCTCGCCATCGGCT
TCGCAATCGTGCTCTTCGCCGGTCTCATCAAGCTGCCGCAGATCGCCACC
ATCGTGTCCAAGCGTTCTGTCGCCGGTCTCACCGTCACCACCTTTCTCGT
CGAGACCTTTGGCTACACCTACAACCTGGCCGCCCATTTCCGCCAGGACT
ATCCCTTGTCCACGTACGGTGACTTCTTCGTGCTCATTTTTCAGAACTAT
GTCATCCTCTATCTGTTCTTCATGTACTCGGCGGCGCCGGCGAAGGGCGT
GCTCATTATTATCGCGTACGCCGCCGCCCTTGCGCTCATGTGCAGTCCGT
ACTTTCCGCTCCCCATTCTGCAGCTCATGACGCTTGGAAATGTTATGGTC
GTCGTGCTGGGAAGAACGCCCCAGATCTACGCTAACTACGTCAACAAGTC
TACTGGCGCCCTCAGCATTTTCACCTGCTGGGGCATCTTTCTCGGCGCAC
TTGCCAGAATATTCACCACTCTGCAGGACGTTGACAGTGTCAACATCCTT
CTCGGCTATCTCGCGTCTGCCACCCTCAACGGCACAATAGCCTTTCAAAC
CATCTACTACAACTACATTGCGAAACCCGCCCCCGAACAAAAGCTCAAAA
AGTCCCAGTAG

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:7419..8279+

>Gcaud2183.t1 ID=Gcaud2183.t1|Name=Gcaud2183.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=861bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:7419..8279+ (Gracilaria caudata M_176_S67 male)
ATGCCCTCCCGCCCTTCAGAGCGTATCCCAGTCGTCGATCGTAAACCCGC
CCCCGCACTTACCGCGATGGAAGGTGTGGAAGTGGACGCCATGAGCGCGC
TCGAGGGCTCGTGGCAGCACGCCGCCACCGCCTTCGTGCACCGCGTGCTT
CCGCCCGTGTGTCCGCGCCCCGCCTCCGTCCTCCGTTTGCCGCTGTTGCT
GCTGTCCGACTCCGTCTGTCTTCGCGCCACGCTCTCGCTCGCCATCGGCT
TCGCAATCGTGCTCTTCGCCGGTCTCATCAAGCTGCCGCAGATCGCCACC
ATCGTGTCCAAGCGTTCTGTCGCCGGTCTCACCGTCACCACCTTTCTCGT
CGAGACCTTTGGCTACACCTACAACCTGGCCGCCCATTTCCGCCAGGACT
ATCCCTTGTCCACGTACGGTGACTTCTTCGTGCTCATTTTTCAGAACTAT
GTCATCCTCTATCTGTTCTTCATGTACTCGGCGGCGCCGGCGAAGGGCGT
GCTCATTATTATCGCGTACGCCGCCGCCCTTGCGCTCATGTGCAGTCCGT
ACTTTCCGCTCCCCATTCTGCAGCTCATGACGCTTGGAAATGTTATGGTC
GTCGTGCTGGGAAGAACGCCCCAGATCTACGCTAACTACGTCAACAAGTC
TACTGGCGCCCTCAGCATTTTCACCTGCTGGGGCATCTTTCTCGGCGCAC
TTGCCAGAATATTCACCACTCTGCAGGACGTTGACAGTGTCAACATCCTT
CTCGGCTATCTCGCGTCTGCCACCCTCAACGGCACAATAGCCTTTCAAAC
CATCTACTACAACTACATTGCGAAACCCGCCCCCGAACAAAAGCTCAAAA
AGTCCCAGTAG