Gcaud2184.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2184.t1
Unique Name	Gcaud2184.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:8344..9966 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	937777.Deipe_3722
PFAMs	Inhibitor_I9,Peptidase_S8
Max annot lvl	1297\|Deinococcus-Thermus
KEGG ko	ko:K20754
Evalue	1.01e-46
EggNOG OGs	COG1404@1\|root,COG1404@2\|Bacteria,1WIDU@1297\|Deinococcus-Thermus
EC	3.4.21.111
Description	peptidase S8 and S53, subtilisin, kexin, sedolisin
COG category	O
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2184	Gcaud2184	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 8344..9966 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2184.t1.stop1	Gcaud2184.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 8344..8346 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2184.t1.CDS1	Gcaud2184.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 8344..9966 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2184.t1.exon1	Gcaud2184.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 8344..9966 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2184.t1.start1	Gcaud2184.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 9964..9966 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2184.t1	Gcaud2184.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 8344..9966 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:8344..9966-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:8344..9966-

mRNA sequence

>Gcaud2184.t1 ID=Gcaud2184.t1|Name=Gcaud2184.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=541bp
MRGAICLALLCILFSFSLTPCAECKKSPWHLQRIVQRNPLTREQIESGTA
AFNTSSIAQRPVNVYVLDSGIRTTHKEFEGNRAILGPNIRSAGESSTDCN
GHGTHVAALAVGAQSGVATKARAISVKVLDCQGKGSCADILSGMEWVAKD
SLMRRRRGERSVLVMSVGSTNEACSGTIEAARRLWRAGVFIAAAAGNRKS
DACKLFPAQSEHTMAVAAVDREDKLYVKNNMGSCVDIFAPGVEIMSAGAL
ESDSKMELKSGTSMATPLVGGTAALILGSRRMLSADQVKEVLISSSTKNK
VLGRNGKVMTGTKNRLLYAPWRRLFTDIKMNGAPEGTSTRGEVGPSAKIS
AGRNSSSWLLSVSLTLTPGVSPAMTYSATQIKRSLSRETGVKAQWIVVRR
AKGVTLHNNESEPEQVPLVFYMPTHTKWADLYASRIKDSITSGRLRANSI
ENVTATSAEEAVRQNATLPEVANELPAYLDERDSEIKARFDLGLYGKIMF
CILVIMFFMFLAYGAYFHTVLRHLLAREREAAEPELATAV*

spliced messenger RNA

>Gcaud2184.t1 ID=Gcaud2184.t1|Name=Gcaud2184.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:8344..9966- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGAGCCATATGTCTTGCCCTCTTGTGCATTTTGTTCTCATTCTC
ACTGACACCATGCGCTGAGTGTAAGAAGAGTCCGTGGCACTTGCAGCGAA
TAGTGCAGAGAAATCCTCTTACTCGCGAACAGATTGAGAGCGGAACGGCC
GCTTTCAACACGTCATCCATCGCACAAAGACCCGTGAATGTCTATGTGTT
GGACAGCGGGATTCGGACAACGCACAAGGAATTCGAGGGCAATCGAGCGA
TCCTTGGTCCGAACATCCGCAGTGCAGGAGAAAGCTCGACAGACTGCAAT
GGGCATGGAACGCACGTTGCTGCATTGGCGGTTGGAGCGCAGAGCGGGGT
GGCAACAAAAGCACGAGCTATATCGGTGAAGGTGCTTGATTGCCAAGGGA
AGGGCTCATGCGCTGATATTCTCTCTGGTATGGAGTGGGTGGCCAAAGAC
AGTCTAATGCGACGTCGGCGAGGAGAGCGTTCGGTACTCGTCATGTCGGT
TGGATCGACTAATGAGGCATGTTCCGGTACCATCGAGGCGGCACGGAGGT
TGTGGAGGGCAGGGGTGTTCATTGCAGCCGCTGCGGGAAACCGCAAGTCC
GACGCTTGCAAGTTGTTCCCTGCTCAAAGCGAGCACACAATGGCTGTAGC
GGCAGTGGATAGGGAAGACAAGCTCTATGTGAAGAACAATATGGGTTCTT
GTGTAGACATTTTCGCACCAGGCGTTGAAATCATGTCTGCGGGGGCGTTG
GAATCGGATAGTAAGATGGAGTTGAAATCCGGGACAAGCATGGCAACACC
TCTTGTGGGCGGCACTGCGGCGTTGATTCTCGGCTCTCGCCGGATGCTGT
CTGCGGATCAAGTGAAGGAGGTGTTGATCTCCTCTAGCACGAAGAACAAG
GTGCTGGGGAGAAATGGAAAGGTGATGACGGGGACAAAGAACCGTCTCCT
TTACGCACCTTGGAGACGGTTGTTCACCGATATCAAAATGAACGGCGCAC
CGGAAGGCACCAGCACGCGCGGTGAAGTCGGGCCGTCTGCGAAGATTAGT
GCGGGGCGGAACTCAAGCTCGTGGCTTTTATCTGTTTCGTTGACGTTGAC
GCCAGGTGTATCTCCGGCGATGACATATTCGGCGACGCAAATCAAACGGT
CTCTGTCACGAGAAACGGGAGTGAAGGCACAATGGATTGTGGTAAGACGT
GCCAAGGGTGTTACGTTGCATAACAACGAATCAGAACCCGAACAGGTTCC
GTTAGTGTTTTATATGCCGACACATACAAAATGGGCCGATTTGTATGCAT
CACGGATCAAGGACTCGATCACTAGTGGGAGACTTCGTGCAAACAGTATT
GAGAACGTGACAGCGACATCAGCGGAGGAGGCTGTAAGACAGAACGCAAC
ATTGCCGGAAGTGGCCAACGAATTGCCCGCATATCTTGACGAGAGAGATT
CGGAGATAAAAGCCCGTTTCGACCTGGGGCTGTATGGGAAGATAATGTTT
TGCATCTTGGTCATTATGTTTTTCATGTTTTTGGCATATGGGGCGTACTT
TCATACAGTGCTGCGACATCTTCTTGCTCGGGAACGAGAAGCAGCGGAAC
CGGAGTTGGCAACGGCGGTATGA

protein sequence of Gcaud2184.t1

>Gcaud2184.t1 ID=Gcaud2184.t1|Name=Gcaud2184.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=541bp
MRGAICLALLCILFSFSLTPCAECKKSPWHLQRIVQRNPLTREQIESGTA
AFNTSSIAQRPVNVYVLDSGIRTTHKEFEGNRAILGPNIRSAGESSTDCN
GHGTHVAALAVGAQSGVATKARAISVKVLDCQGKGSCADILSGMEWVAKD
SLMRRRRGERSVLVMSVGSTNEACSGTIEAARRLWRAGVFIAAAAGNRKS
DACKLFPAQSEHTMAVAAVDREDKLYVKNNMGSCVDIFAPGVEIMSAGAL
ESDSKMELKSGTSMATPLVGGTAALILGSRRMLSADQVKEVLISSSTKNK
VLGRNGKVMTGTKNRLLYAPWRRLFTDIKMNGAPEGTSTRGEVGPSAKIS
AGRNSSSWLLSVSLTLTPGVSPAMTYSATQIKRSLSRETGVKAQWIVVRR
AKGVTLHNNESEPEQVPLVFYMPTHTKWADLYASRIKDSITSGRLRANSI
ENVTATSAEEAVRQNATLPEVANELPAYLDERDSEIKARFDLGLYGKIMF
CILVIMFFMFLAYGAYFHTVLRHLLAREREAAEPELATAV*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:8344..9966-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2184.t1 ID=Gcaud2184.t1|Name=Gcaud2184.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:8344..9966- (Gracilaria caudata M_176_S67 male)
ATGCGAGGAGCCATATGTCTTGCCCTCTTGTGCATTTTGTTCTCATTCTC
ACTGACACCATGCGCTGAGTGTAAGAAGAGTCCGTGGCACTTGCAGCGAA
TAGTGCAGAGAAATCCTCTTACTCGCGAACAGATTGAGAGCGGAACGGCC
GCTTTCAACACGTCATCCATCGCACAAAGACCCGTGAATGTCTATGTGTT
GGACAGCGGGATTCGGACAACGCACAAGGAATTCGAGGGCAATCGAGCGA
TCCTTGGTCCGAACATCCGCAGTGCAGGAGAAAGCTCGACAGACTGCAAT
GGGCATGGAACGCACGTTGCTGCATTGGCGGTTGGAGCGCAGAGCGGGGT
GGCAACAAAAGCACGAGCTATATCGGTGAAGGTGCTTGATTGCCAAGGGA
AGGGCTCATGCGCTGATATTCTCTCTGGTATGGAGTGGGTGGCCAAAGAC
AGTCTAATGCGACGTCGGCGAGGAGAGCGTTCGGTACTCGTCATGTCGGT
TGGATCGACTAATGAGGCATGTTCCGGTACCATCGAGGCGGCACGGAGGT
TGTGGAGGGCAGGGGTGTTCATTGCAGCCGCTGCGGGAAACCGCAAGTCC
GACGCTTGCAAGTTGTTCCCTGCTCAAAGCGAGCACACAATGGCTGTAGC
GGCAGTGGATAGGGAAGACAAGCTCTATGTGAAGAACAATATGGGTTCTT
GTGTAGACATTTTCGCACCAGGCGTTGAAATCATGTCTGCGGGGGCGTTG
GAATCGGATAGTAAGATGGAGTTGAAATCCGGGACAAGCATGGCAACACC
TCTTGTGGGCGGCACTGCGGCGTTGATTCTCGGCTCTCGCCGGATGCTGT
CTGCGGATCAAGTGAAGGAGGTGTTGATCTCCTCTAGCACGAAGAACAAG
GTGCTGGGGAGAAATGGAAAGGTGATGACGGGGACAAAGAACCGTCTCCT
TTACGCACCTTGGAGACGGTTGTTCACCGATATCAAAATGAACGGCGCAC
CGGAAGGCACCAGCACGCGCGGTGAAGTCGGGCCGTCTGCGAAGATTAGT
GCGGGGCGGAACTCAAGCTCGTGGCTTTTATCTGTTTCGTTGACGTTGAC
GCCAGGTGTATCTCCGGCGATGACATATTCGGCGACGCAAATCAAACGGT
CTCTGTCACGAGAAACGGGAGTGAAGGCACAATGGATTGTGGTAAGACGT
GCCAAGGGTGTTACGTTGCATAACAACGAATCAGAACCCGAACAGGTTCC
GTTAGTGTTTTATATGCCGACACATACAAAATGGGCCGATTTGTATGCAT
CACGGATCAAGGACTCGATCACTAGTGGGAGACTTCGTGCAAACAGTATT
GAGAACGTGACAGCGACATCAGCGGAGGAGGCTGTAAGACAGAACGCAAC
ATTGCCGGAAGTGGCCAACGAATTGCCCGCATATCTTGACGAGAGAGATT
CGGAGATAAAAGCCCGTTTCGACCTGGGGCTGTATGGGAAGATAATGTTT
TGCATCTTGGTCATTATGTTTTTCATGTTTTTGGCATATGGGGCGTACTT
TCATACAGTGCTGCGACATCTTCTTGCTCGGGAACGAGAAGCAGCGGAAC
CGGAGTTGGCAACGGCGGTATGA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:8344..9966-

>Gcaud2184.t1 ID=Gcaud2184.t1|Name=Gcaud2184.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1623bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:8344..9966- (Gracilaria caudata M_176_S67 male)
ATGCGAGGAGCCATATGTCTTGCCCTCTTGTGCATTTTGTTCTCATTCTC
ACTGACACCATGCGCTGAGTGTAAGAAGAGTCCGTGGCACTTGCAGCGAA
TAGTGCAGAGAAATCCTCTTACTCGCGAACAGATTGAGAGCGGAACGGCC
GCTTTCAACACGTCATCCATCGCACAAAGACCCGTGAATGTCTATGTGTT
GGACAGCGGGATTCGGACAACGCACAAGGAATTCGAGGGCAATCGAGCGA
TCCTTGGTCCGAACATCCGCAGTGCAGGAGAAAGCTCGACAGACTGCAAT
GGGCATGGAACGCACGTTGCTGCATTGGCGGTTGGAGCGCAGAGCGGGGT
GGCAACAAAAGCACGAGCTATATCGGTGAAGGTGCTTGATTGCCAAGGGA
AGGGCTCATGCGCTGATATTCTCTCTGGTATGGAGTGGGTGGCCAAAGAC
AGTCTAATGCGACGTCGGCGAGGAGAGCGTTCGGTACTCGTCATGTCGGT
TGGATCGACTAATGAGGCATGTTCCGGTACCATCGAGGCGGCACGGAGGT
TGTGGAGGGCAGGGGTGTTCATTGCAGCCGCTGCGGGAAACCGCAAGTCC
GACGCTTGCAAGTTGTTCCCTGCTCAAAGCGAGCACACAATGGCTGTAGC
GGCAGTGGATAGGGAAGACAAGCTCTATGTGAAGAACAATATGGGTTCTT
GTGTAGACATTTTCGCACCAGGCGTTGAAATCATGTCTGCGGGGGCGTTG
GAATCGGATAGTAAGATGGAGTTGAAATCCGGGACAAGCATGGCAACACC
TCTTGTGGGCGGCACTGCGGCGTTGATTCTCGGCTCTCGCCGGATGCTGT
CTGCGGATCAAGTGAAGGAGGTGTTGATCTCCTCTAGCACGAAGAACAAG
GTGCTGGGGAGAAATGGAAAGGTGATGACGGGGACAAAGAACCGTCTCCT
TTACGCACCTTGGAGACGGTTGTTCACCGATATCAAAATGAACGGCGCAC
CGGAAGGCACCAGCACGCGCGGTGAAGTCGGGCCGTCTGCGAAGATTAGT
GCGGGGCGGAACTCAAGCTCGTGGCTTTTATCTGTTTCGTTGACGTTGAC
GCCAGGTGTATCTCCGGCGATGACATATTCGGCGACGCAAATCAAACGGT
CTCTGTCACGAGAAACGGGAGTGAAGGCACAATGGATTGTGGTAAGACGT
GCCAAGGGTGTTACGTTGCATAACAACGAATCAGAACCCGAACAGGTTCC
GTTAGTGTTTTATATGCCGACACATACAAAATGGGCCGATTTGTATGCAT
CACGGATCAAGGACTCGATCACTAGTGGGAGACTTCGTGCAAACAGTATT
GAGAACGTGACAGCGACATCAGCGGAGGAGGCTGTAAGACAGAACGCAAC
ATTGCCGGAAGTGGCCAACGAATTGCCCGCATATCTTGACGAGAGAGATT
CGGAGATAAAAGCCCGTTTCGACCTGGGGCTGTATGGGAAGATAATGTTT
TGCATCTTGGTCATTATGTTTTTCATGTTTTTGGCATATGGGGCGTACTT
TCATACAGTGCTGCGACATCTTCTTGCTCGGGAACGAGAAGCAGCGGAAC
CGGAGTTGGCAACGGCGGTATGA