Gcaud2180.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2180.t1
Unique NameGcaud2180.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:162..1478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S19_94V6.1
PFAMsPRK,UPRTase
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017,RC00063,RC00540
KEGG koko:K00761,ko:K00876,ko:K01783
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00966,R00967,R00968,R00970,R01529,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00030,ko00040,ko00240,ko00710,ko00983,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00240,map00710,map00983,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
GOsGO:0003674,GO:0003824,GO:0004845,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009507,GO:0009536,GO:0009889,GO:0009987,GO:0010138,GO:0010556,GO:0010675,GO:0010962,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016763,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0031323,GO:0031326,GO:0032262,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043173,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043455,GO:0044206,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0050789,GO:0050794,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0072527,GO:0072528,GO:0080090,GO:0090407,GO:1900376,GO:1901135,GO:1901137,GO:1901141,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:2000112,GO:2000762,GO:2000904,GO:2001006
Evalue1.05e-146
EggNOG OGsCOG0572@1|root,KOG4203@2759|Eukaryota,37MJC@33090|Viridiplantae,3GE4G@35493|Streptophyta
EC2.4.2.9,2.7.1.48,5.1.3.1
Descriptionbelongs to the uridine kinase family
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2180Gcaud2180Gracilaria caudata M_176_S67 malegeneNODE_19_length_78712_cov_4.326007 162..1478 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2180.t1.stop1Gcaud2180.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_19_length_78712_cov_4.326007 162..164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2180.t1.CDS1Gcaud2180.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 162..1478 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2180.t1.exon1Gcaud2180.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 162..1478 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2180.t1.start1Gcaud2180.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_19_length_78712_cov_4.326007 1476..1478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2180.t1Gcaud2180.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_19_length_78712_cov_4.326007 162..1478 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2180.t1 ID=Gcaud2180.t1|Name=Gcaud2180.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=439bp
MPQEVGPFIIGVTGASASGKTTVCEKIIDGLGDQRCVLVSLDWFYHGLPD
GTDAASYNFDHPNAFDFDALLDTLRTMQRRVPVSVPMYDFARHKRAQDHC
TELDVADVIIVEGILSFYDPRIRQMMHMKIFVDEDADICLARRIVRDTQA
RSRSVQSVLKQYTTFVKPAFERFILPTKRYSDIVVPRGAENLVAIDLIIK
HIALKIQQTDLRKVYSNLVVMADSYQCRGLHTIIRSADASRHDIVFYSNR
LMRLVIEEGLGLLPFKRKSVTTPSGGRFLGVGFVAGLAGVSLMPSGETME
SSLRAVCHTVRIGKMLIGAPGANSQCSRELCNSEQLEVRYEYLPHGLADR
YVLLLAPVLNDGRMCEAAISRLISAEVGCREDHIVVLSLIVAPQAVHRIC
ERFSKVRVVVSAIDEGLDDNGKVFPGAGDFAKRYYGTD*
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spliced messenger RNA

>Gcaud2180.t1 ID=Gcaud2180.t1|Name=Gcaud2180.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:162..1478- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGGAAGTCGGCCCGTTTATCATCGGCGTCACTGGCGCTTCGGC
CAGCGGCAAGACCACCGTGTGCGAGAAGATCATCGATGGGCTTGGGGACC
AACGCTGCGTGCTCGTGTCGCTGGACTGGTTCTATCATGGGCTGCCCGAC
GGCACCGACGCCGCCAGCTATAACTTCGACCATCCCAACGCGTTCGACTT
CGACGCTCTGTTAGATACGCTGCGTACTATGCAGCGCCGCGTGCCCGTGT
CCGTGCCCATGTACGACTTTGCGCGTCATAAACGCGCGCAAGACCACTGC
ACGGAGCTCGACGTCGCCGACGTCATCATTGTGGAGGGTATTCTGTCCTT
CTACGACCCGCGCATCCGCCAAATGATGCACATGAAGATCTTCGTCGATG
AGGACGCCGACATCTGCCTGGCGCGTCGCATTGTGCGCGACACGCAGGCG
CGCTCTCGATCCGTACAGTCCGTACTCAAGCAGTATACCACTTTTGTCAA
GCCGGCGTTCGAGCGCTTCATCCTGCCCACCAAGCGCTACTCCGACATCG
TCGTGCCGCGCGGCGCGGAAAACCTGGTCGCCATTGACCTGATCATCAAG
CACATTGCTCTCAAGATCCAGCAGACCGACCTGCGAAAGGTGTACTCTAA
TCTGGTGGTTATGGCTGACAGCTACCAATGTCGCGGGCTGCACACCATCA
TTCGCAGCGCCGACGCCAGTCGTCACGACATTGTGTTCTACTCTAACCGC
CTCATGCGCCTGGTCATTGAGGAGGGGCTCGGCCTGCTGCCGTTCAAGCG
CAAGAGCGTCACCACGCCTTCGGGCGGCCGCTTCCTGGGTGTCGGCTTCG
TGGCTGGGCTAGCTGGCGTCAGTCTCATGCCCAGCGGCGAGACCATGGAG
AGCAGCCTGCGAGCGGTGTGTCACACTGTGCGCATCGGCAAAATGCTCAT
TGGTGCCCCTGGCGCCAACTCGCAGTGCTCCCGGGAGCTCTGCAACAGCG
AGCAGCTGGAGGTCAGGTACGAGTACTTGCCGCACGGACTGGCCGATCGC
TACGTGCTGCTGCTGGCGCCCGTGCTGAACGACGGCAGAATGTGTGAGGC
CGCCATTTCTCGCCTCATCAGCGCGGAGGTGGGCTGTCGGGAGGATCACA
TCGTTGTGCTCAGTTTGATCGTCGCGCCGCAGGCGGTGCATCGTATTTGC
GAGAGGTTCAGTAAGGTTAGGGTAGTGGTGTCGGCCATTGATGAAGGGCT
GGATGACAACGGCAAGGTATTCCCCGGCGCCGGGGACTTTGCCAAACGCT
ATTATGGCACGGATTGA
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protein sequence of Gcaud2180.t1

>Gcaud2180.t1 ID=Gcaud2180.t1|Name=Gcaud2180.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MPQEVGPFIIGVTGASASGKTTVCEKIIDGLGDQRCVLVSLDWFYHGLPD
GTDAASYNFDHPNAFDFDALLDTLRTMQRRVPVSVPMYDFARHKRAQDHC
TELDVADVIIVEGILSFYDPRIRQMMHMKIFVDEDADICLARRIVRDTQA
RSRSVQSVLKQYTTFVKPAFERFILPTKRYSDIVVPRGAENLVAIDLIIK
HIALKIQQTDLRKVYSNLVVMADSYQCRGLHTIIRSADASRHDIVFYSNR
LMRLVIEEGLGLLPFKRKSVTTPSGGRFLGVGFVAGLAGVSLMPSGETME
SSLRAVCHTVRIGKMLIGAPGANSQCSRELCNSEQLEVRYEYLPHGLADR
YVLLLAPVLNDGRMCEAAISRLISAEVGCREDHIVVLSLIVAPQAVHRIC
ERFSKVRVVVSAIDEGLDDNGKVFPGAGDFAKRYYGTD*
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mRNA from alignment at NODE_19_length_78712_cov_4.326007:162..1478-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2180.t1 ID=Gcaud2180.t1|Name=Gcaud2180.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:162..1478- (Gracilaria caudata M_176_S67 male)
ATGCCGCAGGAAGTCGGCCCGTTTATCATCGGCGTCACTGGCGCTTCGGC
CAGCGGCAAGACCACCGTGTGCGAGAAGATCATCGATGGGCTTGGGGACC
AACGCTGCGTGCTCGTGTCGCTGGACTGGTTCTATCATGGGCTGCCCGAC
GGCACCGACGCCGCCAGCTATAACTTCGACCATCCCAACGCGTTCGACTT
CGACGCTCTGTTAGATACGCTGCGTACTATGCAGCGCCGCGTGCCCGTGT
CCGTGCCCATGTACGACTTTGCGCGTCATAAACGCGCGCAAGACCACTGC
ACGGAGCTCGACGTCGCCGACGTCATCATTGTGGAGGGTATTCTGTCCTT
CTACGACCCGCGCATCCGCCAAATGATGCACATGAAGATCTTCGTCGATG
AGGACGCCGACATCTGCCTGGCGCGTCGCATTGTGCGCGACACGCAGGCG
CGCTCTCGATCCGTACAGTCCGTACTCAAGCAGTATACCACTTTTGTCAA
GCCGGCGTTCGAGCGCTTCATCCTGCCCACCAAGCGCTACTCCGACATCG
TCGTGCCGCGCGGCGCGGAAAACCTGGTCGCCATTGACCTGATCATCAAG
CACATTGCTCTCAAGATCCAGCAGACCGACCTGCGAAAGGTGTACTCTAA
TCTGGTGGTTATGGCTGACAGCTACCAATGTCGCGGGCTGCACACCATCA
TTCGCAGCGCCGACGCCAGTCGTCACGACATTGTGTTCTACTCTAACCGC
CTCATGCGCCTGGTCATTGAGGAGGGGCTCGGCCTGCTGCCGTTCAAGCG
CAAGAGCGTCACCACGCCTTCGGGCGGCCGCTTCCTGGGTGTCGGCTTCG
TGGCTGGGCTAGCTGGCGTCAGTCTCATGCCCAGCGGCGAGACCATGGAG
AGCAGCCTGCGAGCGGTGTGTCACACTGTGCGCATCGGCAAAATGCTCAT
TGGTGCCCCTGGCGCCAACTCGCAGTGCTCCCGGGAGCTCTGCAACAGCG
AGCAGCTGGAGGTCAGGTACGAGTACTTGCCGCACGGACTGGCCGATCGC
TACGTGCTGCTGCTGGCGCCCGTGCTGAACGACGGCAGAATGTGTGAGGC
CGCCATTTCTCGCCTCATCAGCGCGGAGGTGGGCTGTCGGGAGGATCACA
TCGTTGTGCTCAGTTTGATCGTCGCGCCGCAGGCGGTGCATCGTATTTGC
GAGAGGTTCAGTAAGGTTAGGGTAGTGGTGTCGGCCATTGATGAAGGGCT
GGATGACAACGGCAAGGTATTCCCCGGCGCCGGGGACTTTGCCAAACGCT
ATTATGGCACGGATTGA
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Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:162..1478-

>Gcaud2180.t1 ID=Gcaud2180.t1|Name=Gcaud2180.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1317bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:162..1478- (Gracilaria caudata M_176_S67 male)
ATGCCGCAGGAAGTCGGCCCGTTTATCATCGGCGTCACTGGCGCTTCGGC
CAGCGGCAAGACCACCGTGTGCGAGAAGATCATCGATGGGCTTGGGGACC
AACGCTGCGTGCTCGTGTCGCTGGACTGGTTCTATCATGGGCTGCCCGAC
GGCACCGACGCCGCCAGCTATAACTTCGACCATCCCAACGCGTTCGACTT
CGACGCTCTGTTAGATACGCTGCGTACTATGCAGCGCCGCGTGCCCGTGT
CCGTGCCCATGTACGACTTTGCGCGTCATAAACGCGCGCAAGACCACTGC
ACGGAGCTCGACGTCGCCGACGTCATCATTGTGGAGGGTATTCTGTCCTT
CTACGACCCGCGCATCCGCCAAATGATGCACATGAAGATCTTCGTCGATG
AGGACGCCGACATCTGCCTGGCGCGTCGCATTGTGCGCGACACGCAGGCG
CGCTCTCGATCCGTACAGTCCGTACTCAAGCAGTATACCACTTTTGTCAA
GCCGGCGTTCGAGCGCTTCATCCTGCCCACCAAGCGCTACTCCGACATCG
TCGTGCCGCGCGGCGCGGAAAACCTGGTCGCCATTGACCTGATCATCAAG
CACATTGCTCTCAAGATCCAGCAGACCGACCTGCGAAAGGTGTACTCTAA
TCTGGTGGTTATGGCTGACAGCTACCAATGTCGCGGGCTGCACACCATCA
TTCGCAGCGCCGACGCCAGTCGTCACGACATTGTGTTCTACTCTAACCGC
CTCATGCGCCTGGTCATTGAGGAGGGGCTCGGCCTGCTGCCGTTCAAGCG
CAAGAGCGTCACCACGCCTTCGGGCGGCCGCTTCCTGGGTGTCGGCTTCG
TGGCTGGGCTAGCTGGCGTCAGTCTCATGCCCAGCGGCGAGACCATGGAG
AGCAGCCTGCGAGCGGTGTGTCACACTGTGCGCATCGGCAAAATGCTCAT
TGGTGCCCCTGGCGCCAACTCGCAGTGCTCCCGGGAGCTCTGCAACAGCG
AGCAGCTGGAGGTCAGGTACGAGTACTTGCCGCACGGACTGGCCGATCGC
TACGTGCTGCTGCTGGCGCCCGTGCTGAACGACGGCAGAATGTGTGAGGC
CGCCATTTCTCGCCTCATCAGCGCGGAGGTGGGCTGTCGGGAGGATCACA
TCGTTGTGCTCAGTTTGATCGTCGCGCCGCAGGCGGTGCATCGTATTTGC
GAGAGGTTCAGTAAGGTTAGGGTAGTGGTGTCGGCCATTGATGAAGGGCT
GGATGACAACGGCAAGGTATTCCCCGGCGCCGGGGACTTTGCCAAACGCT
ATTATGGCACGGATTGA
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