Gcaud2195.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2195.t1
Unique NameGcaud2195.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:39107..39807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2195Gcaud2195Gracilaria caudata M_176_S67 malegeneNODE_19_length_78712_cov_4.326007 39107..39807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2195.t1Gcaud2195.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_19_length_78712_cov_4.326007 39107..39807 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2195.t1.start1Gcaud2195.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_19_length_78712_cov_4.326007 39107..39109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2195.t1.CDS1Gcaud2195.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 39107..39336 +
Gcaud2195.t1.CDS2Gcaud2195.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 39419..39510 +
Gcaud2195.t1.CDS3Gcaud2195.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 39605..39807 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2195.t1.exon1Gcaud2195.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 39107..39336 +
Gcaud2195.t1.exon2Gcaud2195.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 39419..39510 +
Gcaud2195.t1.exon3Gcaud2195.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 39605..39807 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2195.t1.intron1Gcaud2195.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_19_length_78712_cov_4.326007 39337..39418 +
Gcaud2195.t1.intron2Gcaud2195.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_19_length_78712_cov_4.326007 39511..39604 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2195.t1.stop1Gcaud2195.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_19_length_78712_cov_4.326007 39805..39807 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2195.t1 ID=Gcaud2195.t1|Name=Gcaud2195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=175bp
MSDLNDFFAKKDRKKKKAAAKSAQAAAAQAVKQSETASENPPPPPPQKVP
DDGWIEIEDVRGSQVNTGGRTIVQLRRDGEEKEINPDGHANTEKFSGWAK
TDVTPTDEEQTTAAQAPSSAFPTLADAAKVKKVAPTKPSSEPPSTARRPR
FTLANREKLLQALTAGREPMKPTK*
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spliced messenger RNA

>Gcaud2195.t1 ID=Gcaud2195.t1|Name=Gcaud2195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=525bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:39107..39807+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGACCTCAACGATTTCTTCGCCAAAAAGGACCGCAAGAAGAAGAA
GGCAGCCGCGAAATCTGCACAAGCAGCCGCAGCGCAGGCCGTCAAACAGT
CGGAAACTGCCTCTGAAAACCCGCCTCCCCCACCCCCACAAAAAGTGCCC
GATGACGGTTGGATTGAAATCGAGGACGTGCGCGGCTCGCAAGTTAACAC
TGGTGGACGCACTATAGTGCAGTTAAGAAGAGATGGTGAGGAAAAGGAAA
TCAACCCCGATGGCCATGCCAACACGGAGAAGTTCAGCGGATGGGCTAAA
ACGGATGTAACTCCCACGGATGAAGAACAAACTACAGCAGCACAAGCCCC
GAGCAGCGCGTTTCCGACCCTTGCCGATGCTGCAAAAGTGAAAAAGGTCG
CTCCAACAAAGCCGTCTAGCGAGCCACCATCCACCGCTCGTCGCCCACGA
TTCACTTTAGCAAACAGAGAGAAGTTATTACAAGCTCTAACCGCTGGTCG
AGAACCAATGAAACCCACAAAATAA
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protein sequence of Gcaud2195.t1

>Gcaud2195.t1 ID=Gcaud2195.t1|Name=Gcaud2195.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=175bp
MSDLNDFFAKKDRKKKKAAAKSAQAAAAQAVKQSETASENPPPPPPQKVP
DDGWIEIEDVRGSQVNTGGRTIVQLRRDGEEKEINPDGHANTEKFSGWAK
TDVTPTDEEQTTAAQAPSSAFPTLADAAKVKKVAPTKPSSEPPSTARRPR
FTLANREKLLQALTAGREPMKPTK*
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mRNA from alignment at NODE_19_length_78712_cov_4.326007:39107..39807+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2195.t1 ID=Gcaud2195.t1|Name=Gcaud2195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=701bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:39107..39807+ (Gracilaria caudata M_176_S67 male)
ATGAGTGACCTCAACGATTTCTTCGCCAAAAAGGACCGCAAGAAGAAGAA
GGCAGCCGCGAAATCTGCACAAGCAGCCGCAGCGCAGGCCGTCAAACAGT
CGGAAACTGCCTCTGAAAACCCGCCTCCCCCACCCCCACAAAAAGTGCCC
GATGACGGTTGGATTGAAATCGAGGACGTGCGCGGCTCGCAAGTTAACAC
TGGTGGACGCACTATAGTGCAGTTAAGAAGGTAAGGTGTCTCACACGTTT
TCCAAACTACTCGTGCAAGCATGCTCACGCGCTTCTAATCTTTTCCTCTA
TCGCGCCTGTAGAGATGGTGAGGAAAAGGAAATCAACCCCGATGGCCATG
CCAACACGGAGAAGTTCAGCGGATGGGCTAAAACGGATGTAACTCCCACG
GATGGTACGTTACACCGCCAGCAATTACAACGCATATGTCGAATGAATTT
GTCAAACATCTGACCTTTGTGAACTTTCAAATCGTACTCTCAACGTAGAA
GAACAAACTACAGCAGCACAAGCCCCGAGCAGCGCGTTTCCGACCCTTGC
CGATGCTGCAAAAGTGAAAAAGGTCGCTCCAACAAAGCCGTCTAGCGAGC
CACCATCCACCGCTCGTCGCCCACGATTCACTTTAGCAAACAGAGAGAAG
TTATTACAAGCTCTAACCGCTGGTCGAGAACCAATGAAACCCACAAAATA
A
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Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:39107..39807+

>Gcaud2195.t1 ID=Gcaud2195.t1|Name=Gcaud2195.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=525bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:39107..39807+ (Gracilaria caudata M_176_S67 male)
ATGAGTGACCTCAACGATTTCTTCGCCAAAAAGGACCGCAAGAAGAAGAA
GGCAGCCGCGAAATCTGCACAAGCAGCCGCAGCGCAGGCCGTCAAACAGT
CGGAAACTGCCTCTGAAAACCCGCCTCCCCCACCCCCACAAAAAGTGCCC
GATGACGGTTGGATTGAAATCGAGGACGTGCGCGGCTCGCAAGTTAACAC
TGGTGGACGCACTATAGTGCAGTTAAGAAGAGATGGTGAGGAAAAGGAAA
TCAACCCCGATGGCCATGCCAACACGGAGAAGTTCAGCGGATGGGCTAAA
ACGGATGTAACTCCCACGGATGAAGAACAAACTACAGCAGCACAAGCCCC
GAGCAGCGCGTTTCCGACCCTTGCCGATGCTGCAAAAGTGAAAAAGGTCG
CTCCAACAAAGCCGTCTAGCGAGCCACCATCCACCGCTCGTCGCCCACGA
TTCACTTTAGCAAACAGAGAGAAGTTATTACAAGCTCTAACCGCTGGTCG
AGAACCAATGAAACCCACAAAATAA
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