Gcaud2182.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2182.t1
Unique NameGcaud2182.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length386
Homology
BLAST of Gcaud2182.t1 vs. uniprot
Match: A0A2V3IZ29_9FLOR (POC1 centriolar protein-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ29_9FLOR)

HSP 1 Score: 655 bits (1689), Expect = 1.070e-235
Identity = 312/378 (82.54%), Postives = 345/378 (91.27%), Query Frame = 0
Query:    1 MSSDEQSPPQMAASSLRAFPAAVSDVRTGHAGFVFSCSRAADRLCLHDTNSGERVVSLDVPAQRPSRIAVASDGVKCAFATVTGTVYIWDMLYPTSMESFRPDEEQSSPVTDLAWHPRGHVLAVATECGHLYLWDHVVGALLYPLPAHVGAISAVRWTAHGRLLVSVGASDSLLRVWNPRNVNNLADVSAETEHSTPVKWHARGISCLDTLQDMSRVAITGAPDGSVLLSVLKPESQCGVFASMNAHHSAVSCVRFAPIGSPRPLRSASAAVDGSVHLFDMDRRLPMGKFTHGKNAVVQLDFSHHADVLFSAAGQTVMAWDARVAPEEEPPITFGAHHHVVNAFALVNSGANLVTACDDGMLRTYDMRYPSGDPPSLP 378
            MS D  +PPQ+ + +LRAF A  S ++ GHAGFVFSCSRAAD+L LHDTNSG+R++SLD PAQRPSRIAV++DGVKCAFAT TG VYIWD+LYPTSMESFRPDE+ SSPVTDLAWHPRGHVLAVATE G++YLWDHVVGALL+PLPAH G+ISAVRWTAHGRLLV+VGASD+LLRVWNPRNVNNLADVSA +EH+TP KWH  GI+CLDTLQDMSRVAITGAPDGSVLLSVLKPESQCGVFASMN+H + V CVRFAPIGSPRPLRSASAA DGS+HLFDM+RRLPMGKF+H    VVQL+FSHHADVLFSAAG TV+AWDARVAPEEEPPITFGAH H VN+FALVNSGANLVTAC+DGMLRTYDMRYPSG+PP LP
Sbjct:    1 MSCDGDAPPQIPSRTLRAFSAPASALQNGHAGFVFSCSRAADKLSLHDTNSGDRIISLDAPAQRPSRIAVSADGVKCAFATATGAVYIWDVLYPTSMESFRPDEDNSSPVTDLAWHPRGHVLAVATEAGNIYLWDHVVGALLFPLPAHTGSISAVRWTAHGRLLVTVGASDTLLRVWNPRNVNNLADVSASSEHTTPAKWHVGGITCLDTLQDMSRVAITGAPDGSVLLSVLKPESQCGVFASMNSHDAPVHCVRFAPIGSPRPLRSASAADDGSIHLFDMERRLPMGKFSHANKPVVQLEFSHHADVLFSAAGDTVIAWDARVAPEEEPPITFGAHQHAVNSFALVNSGANLVTACEDGMLRTYDMRYPSGEPPPLP 378          
BLAST of Gcaud2182.t1 vs. uniprot
Match: A0A7S2ZQZ4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZQZ4_9RHOD)

HSP 1 Score: 72.4 bits (176), Expect = 2.790e-10
Identity = 79/331 (23.87%), Postives = 131/331 (39.58%), Query Frame = 0
Query:   42 DRLCLHDTNSGERVVSLDVPAQRPSRIAVASDGVKCAFATVTGTVYIWDMLYPTSMESFRPDEEQSSPVTDLAW---HPRGHVLAVATECGHLYLWDHVVGALLYPLPAHVGAISAVRWTAHGRLLVSVGASDSLLRVWNPRNVNNLADVSAETEHSTPVKWHARGISCLDTLQDMSRVAITGAPDGSV-LLSVLKPESQCGVFASMNAHHSAVSCVRFAPIGSPRPLRSASAAVDGSVHLFDMDRRLPMGKFTHGKNAVVQLDFSHHADVLFSAA-GQTVMAWDARVAPEEEPPITFGAHHHVVNAFALVNSGANLVTACDDGMLRTYDM 367
            DR  +H+  + +    L+      S IA + DG   AF  + G + + D+       + +P  E   P   + W   H RG+ L   +    +Y+W+   G  +     H   +S       G                         +  A    S P      G+ C+D    M  + I G  DGSV L+S+L         AS+ +H  +V  V+FA  G   P   ASA +DG++ ++DMD         HG   V         +++ SA+  + V  WDAR   + E    F  + + + +  +  +G  +VTA DD  +R +++
Sbjct:  107 DRAIIHNLRNNKVQSQLEDFGDSISAIAFSQDGKLVAFGGMNGRIVVVDVA------TGKPVYEPEGPAASVEWLDFHSRGNWLVGGSSDAFVYMWNEK-GENVMVFSGHATIVSC-----GGXXXXXXXXXXXXXXXXXXXXXXXTGECVAS---SAPANSEKPGVLCMDM---MDNIIIVGYEDGSVRLVSLL----DAAFIASLPSHAGSVESVKFAAPGLV-PRICASAGMDGTLRIWDMDLSRERTALEHGAGVVACKWHQQKPELIISASVDRKVHVWDAR---KGEHIAVFLGNRNTILSMDIGLTGEYVVTASDDHHVRVFNL 411          
BLAST of Gcaud2182.t1 vs. uniprot
Match: UPI000B45F0F5 (WD repeat and SOCS box-containing protein 1-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45F0F5)

HSP 1 Score: 60.8 bits (146), Expect = 1.730e-6
Identity = 57/223 (25.56%), Postives = 95/223 (42.60%), Query Frame = 0
Query:  163 LLVSVGASDSLLRVWNPRNVNNLADVSAETEHSTPVKWHARGISCLDTLQDMSRVAITGAPDGSVLLSVLKPESQCGVFASMNAHHSAVSCVRFAPIGSPRPLRSASAAVDGSVHLFDMDRRLPMGKFTHGK---NAVVQLDFSHHADVLFSAAGQT-VMAWD----------ARVAPEEEPPITFGAHHHVVNAFALVNSGANLVTACDDGMLRTYDMRYPS 371
            L+++ G     ++ W+    N L ++S           H   I  ++   D S + ++ + DG++ +  L  +    +  ++    S  +  ++    SP     AS   + SV LFDM       KFT  K   N V   DFS    +L +A+  T V+ WD            + PE  P    GA+ H +   +  N+G  LVT CDDG +R +D++  S
Sbjct:  169 LILATGLLSGKIKTWDCNTGNLLMELSD----------HRDSIKEINFAPDRSLLFVSASRDGTLKVWDLNDDGN--MTKTLRGKASVANSCKW----SPNCKMIASVGNNKSVALFDMSHE---NKFTQLKGHYNDVCSCDFSPDGALLATASYDTRVILWDPYTGDAIAELGHMFPEPRPIFAGGANDHYLRDVSFCNNGLQLVTVCDDGYMRVWDLQDTS 372          
The following BLAST results are available for this feature:
BLAST of Gcaud2182.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IZ29_9FLOR1.070e-23582.54POC1 centriolar protein-like n=1 Tax=Gracilariopsi... [more]
A0A7S2ZQZ4_9RHOD2.790e-1023.87Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
UPI000B45F0F51.730e-625.56WD repeat and SOCS box-containing protein 1-like n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 96..135
e-value: 0.0085
score: 25.3
coord: 237..280
e-value: 0.21
score: 20.6
coord: 194..231
e-value: 170.0
score: 2.9
coord: 138..178
e-value: 7.2E-4
score: 28.9
coord: 283..321
e-value: 8.1
score: 11.3
coord: 327..366
e-value: 0.048
score: 22.8
coord: 51..90
e-value: 12.0
score: 10.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 103..135
score: 8.536777
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 145..187
score: 9.372231
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 91..159
e-value: 2.2E-7
score: 31.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 186..374
e-value: 1.3E-19
score: 72.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..185
e-value: 1.2E-23
score: 85.9
NoneNo IPR availablePANTHERPTHR19857:SF8MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDcoord: 42..368
NoneNo IPR availablePANTHERPTHR19857MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDcoord: 42..368
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 32..368

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:5950..7107 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2182.t1Gcaud2182.t1Gracilaria caudata M_176_S67 malemRNANODE_19_length_78712_cov_4.326007 5950..7107 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2182.t1 ID=Gcaud2182.t1|Name=Gcaud2182.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=386bp
MSSDEQSPPQMAASSLRAFPAAVSDVRTGHAGFVFSCSRAADRLCLHDTN
SGERVVSLDVPAQRPSRIAVASDGVKCAFATVTGTVYIWDMLYPTSMESF
RPDEEQSSPVTDLAWHPRGHVLAVATECGHLYLWDHVVGALLYPLPAHVG
AISAVRWTAHGRLLVSVGASDSLLRVWNPRNVNNLADVSAETEHSTPVKW
HARGISCLDTLQDMSRVAITGAPDGSVLLSVLKPESQCGVFASMNAHHSA
VSCVRFAPIGSPRPLRSASAAVDGSVHLFDMDRRLPMGKFTHGKNAVVQL
DFSHHADVLFSAAGQTVMAWDARVAPEEEPPITFGAHHHVVNAFALVNSG
ANLVTACDDGMLRTYDMRYPSGDPPSLPVEDKSRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR011047Quinoprotein_ADH-like_supfam