Gcaud2185.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2185.t1
Unique Name	Gcaud2185.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	777

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:10450..12780 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000014655
PFAMs	HMG_box,SNF5
Max annot lvl	121069\|Pythiales
Evalue	4.82e-12
EggNOG OGs	KOG1649@1\|root,KOG1649@2759\|Eukaryota,1MEHU@121069\|Pythiales
Description	Source PGD
COG category	BK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2185	Gcaud2185	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 10450..12780 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2185.t1.stop1	Gcaud2185.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 10450..10452 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2185.t1.CDS1	Gcaud2185.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 10450..12780 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2185.t1.exon1	Gcaud2185.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 10450..12780 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2185.t1.start1	Gcaud2185.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 12778..12780 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2185.t1	Gcaud2185.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 10450..12780 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:10450..12780-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:10450..12780-

mRNA sequence

>Gcaud2185.t1 ID=Gcaud2185.t1|Name=Gcaud2185.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp
MRGSTANMPSEEALREMMRAAAATASAAAGDASVAAAAVTTSEATRYVRH
STGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVDGGVRWKKIQAVAREI
AAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSH
YVRGLFRGNQKNVDDRLAIFVEKFAEGHLDKFLEEARSGTRPIGRPAFYD
SLNLTTVAPHRSTQPAAAAQQVTPTVTDSRPPVPPPPPPQLQPAPWTRPQ
PPPPPSLPPSTSVSPTSKPAKTGGADAGKGAESEKSADQEKPSEQDHATS
TGKSKRAEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSVL
AVEKAYHALVAPKWTGEVSEAEPLLIPIELYVTIGEKTLHMFTQWDVNER
HLAPENVADNIRRARGLPEEFVSPVAFQIRRSLFEAGVICPPPPDLLEAE
HRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSANSPELFAQLLCTDANIS
PEHAPQVARALRAQLVRAHAIAFGDEETKKLAREGLPQDDPLLDNLPPVG
SALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKKA
AEERLRHELEIVRRIELAELARRNADIERARKEVDEEAVQVYQTRNLDFR
PYLKLRIARNESPSLWMPAAFDRRRRKQLTFPMTQPSRKTSGHNILFSRI
SKRRRSGVRKSHDEKSTGRTMEKSEVHVTKKQKTEPTVQSSQSLPPDEDR
KVMLRLRVRNPYNTSQKKTPAPKRRR*

spliced messenger RNA

>Gcaud2185.t1 ID=Gcaud2185.t1|Name=Gcaud2185.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2331bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:10450..12780- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGTTCTACTGCAAACATGCCATCAGAAGAAGCTCTGCGAGAAAT
GATGCGTGCCGCCGCCGCCACCGCCTCTGCCGCTGCCGGAGATGCATCGG
TCGCCGCAGCCGCAGTTACTACTTCAGAGGCCACGCGCTATGTTCGCCAC
TCAACTGGCCGCTCTTCCGCAAACCGCCGCCAAAGCATCAGCATGCTTCC
GCCAACCCTGGGCGGTGAGCAGTTTCGACAGGGTGCCCCGCTGCCTCCCG
TCGATGGCGGCGTCAGGTGGAAGAAGATTCAAGCCGTCGCTCGAGAAATT
GCCGCCAAATGGACCCATCCTCCTGGCTCTTCGCAATACGAAACACCTAC
GCTTCATAATGTGCGCGCAATTCTGTACATGAACAAGAGCCTCATCACTC
AGTCTTTTGTGTCCCATGTTTCTGGTGTTTCTCAGGGAAGTTTGAGTCAT
TACGTGCGCGGTCTCTTCCGTGGAAATCAGAAGAACGTTGATGACCGACT
TGCGATATTCGTCGAGAAGTTTGCGGAAGGACATCTTGACAAGTTTTTGG
AAGAGGCGCGGTCTGGCACCCGACCGATAGGCCGTCCAGCGTTTTATGAT
TCTCTTAATCTCACAACTGTTGCACCGCACAGATCTACTCAACCCGCCGC
TGCTGCTCAACAGGTCACGCCTACAGTGACCGATAGTCGCCCGCCTGTCC
CTCCGCCGCCACCCCCTCAGTTACAACCCGCGCCCTGGACACGCCCTCAG
CCCCCGCCTCCTCCATCACTTCCCCCGAGCACATCTGTGTCTCCAACTTC
AAAACCAGCGAAGACAGGAGGAGCGGACGCGGGCAAAGGCGCTGAGAGTG
AAAAGTCAGCTGATCAGGAGAAACCTTCAGAACAAGATCACGCCACATCA
ACGGGAAAGTCGAAACGGGCAGAGGAGAAGCGCCTTAGTGAGAGGGCTCG
TCGCGCTCAGCAAAGAGCTCAAAAGCAAAGATCAGGAAAACGCCCACGTC
CTGTTTTTCCGCCCATTCCGGAAGAGACTAAAGAGCCAACTTCTGTTCTC
GCTGTAGAAAAAGCTTATCATGCGTTGGTTGCTCCGAAATGGACCGGCGA
GGTTTCAGAGGCAGAGCCGTTGCTCATTCCCATTGAACTATATGTGACCA
TTGGCGAGAAAACCCTTCACATGTTTACTCAATGGGATGTAAACGAGCGA
CATCTTGCACCGGAAAACGTTGCTGATAACATCAGACGCGCAAGAGGACT
CCCCGAAGAGTTCGTTTCGCCTGTGGCGTTTCAAATTCGCCGAAGTCTTT
TCGAAGCCGGTGTGATTTGCCCGCCCCCACCTGATCTCTTGGAAGCAGAA
CACCGCCGTTTAATCAAGATTGTTGTGGAACTTAAAGATGGCGATACTGT
ACACGTCCTTCGCGATGAATTTGAATGGGATCTCGGGTATGGTAGTGCCA
ATTCTCCTGAGCTCTTTGCTCAACTACTTTGCACTGATGCCAACATATCC
CCAGAACATGCTCCTCAGGTTGCTCGAGCACTGCGAGCGCAGCTTGTTCG
GGCTCATGCTATTGCGTTTGGAGATGAAGAAACAAAAAAGTTGGCTCGGG
AAGGGCTGCCACAAGATGATCCTCTTCTTGACAACCTGCCTCCCGTTGGG
TCGGCTTTGATAAAATGCACTGCGGAGGATATTCGTGTAAGAGATCGAGA
AGAAAACGAGCTTGCCATTAGAAATCTTTTCGTCAGGCCTCTTCTCGATT
CTATTCCACTTGAATCCGAGCGGCGCAAGGCTGAACGCGTGAAAAAAGCG
GCTGAGGAAAGGCTAAGGCATGAACTTGAAATTGTTCGACGCATAGAACT
GGCCGAGTTAGCTAGGAGAAACGCTGACATCGAACGAGCACGTAAGGAAG
TCGACGAAGAAGCAGTTCAGGTATACCAAACACGGAACTTGGATTTCCGC
CCGTATTTGAAATTGCGAATTGCGCGAAACGAGAGTCCCAGTCTTTGGAT
GCCTGCTGCCTTCGATAGGAGAAGACGAAAGCAGCTCACTTTTCCGATGA
CGCAACCTTCACGAAAGACCAGTGGCCACAACATTCTTTTCTCAAGAATT
TCAAAAAGAAGGAGGTCAGGCGTGCGGAAGAGTCATGATGAAAAATCTAC
TGGACGCACGATGGAAAAGAGCGAGGTCCATGTTACGAAGAAGCAAAAGA
CAGAACCAACAGTTCAATCAAGCCAGTCATTGCCACCGGATGAGGACAGA
AAGGTTATGCTAAGGCTTAGAGTGAGAAATCCGTACAATACATCTCAGAA
GAAGACACCAGCCCCAAAACGCCGACGTTGA

protein sequence of Gcaud2185.t1

>Gcaud2185.t1 ID=Gcaud2185.t1|Name=Gcaud2185.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=777bp
MRGSTANMPSEEALREMMRAAAATASAAAGDASVAAAAVTTSEATRYVRH
STGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVDGGVRWKKIQAVAREI
AAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSH
YVRGLFRGNQKNVDDRLAIFVEKFAEGHLDKFLEEARSGTRPIGRPAFYD
SLNLTTVAPHRSTQPAAAAQQVTPTVTDSRPPVPPPPPPQLQPAPWTRPQ
PPPPPSLPPSTSVSPTSKPAKTGGADAGKGAESEKSADQEKPSEQDHATS
TGKSKRAEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSVL
AVEKAYHALVAPKWTGEVSEAEPLLIPIELYVTIGEKTLHMFTQWDVNER
HLAPENVADNIRRARGLPEEFVSPVAFQIRRSLFEAGVICPPPPDLLEAE
HRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSANSPELFAQLLCTDANIS
PEHAPQVARALRAQLVRAHAIAFGDEETKKLAREGLPQDDPLLDNLPPVG
SALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKKA
AEERLRHELEIVRRIELAELARRNADIERARKEVDEEAVQVYQTRNLDFR
PYLKLRIARNESPSLWMPAAFDRRRRKQLTFPMTQPSRKTSGHNILFSRI
SKRRRSGVRKSHDEKSTGRTMEKSEVHVTKKQKTEPTVQSSQSLPPDEDR
KVMLRLRVRNPYNTSQKKTPAPKRRR*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:10450..12780-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2185.t1 ID=Gcaud2185.t1|Name=Gcaud2185.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2331bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:10450..12780- (Gracilaria caudata M_176_S67 male)
ATGCGAGGTTCTACTGCAAACATGCCATCAGAAGAAGCTCTGCGAGAAAT
GATGCGTGCCGCCGCCGCCACCGCCTCTGCCGCTGCCGGAGATGCATCGG
TCGCCGCAGCCGCAGTTACTACTTCAGAGGCCACGCGCTATGTTCGCCAC
TCAACTGGCCGCTCTTCCGCAAACCGCCGCCAAAGCATCAGCATGCTTCC
GCCAACCCTGGGCGGTGAGCAGTTTCGACAGGGTGCCCCGCTGCCTCCCG
TCGATGGCGGCGTCAGGTGGAAGAAGATTCAAGCCGTCGCTCGAGAAATT
GCCGCCAAATGGACCCATCCTCCTGGCTCTTCGCAATACGAAACACCTAC
GCTTCATAATGTGCGCGCAATTCTGTACATGAACAAGAGCCTCATCACTC
AGTCTTTTGTGTCCCATGTTTCTGGTGTTTCTCAGGGAAGTTTGAGTCAT
TACGTGCGCGGTCTCTTCCGTGGAAATCAGAAGAACGTTGATGACCGACT
TGCGATATTCGTCGAGAAGTTTGCGGAAGGACATCTTGACAAGTTTTTGG
AAGAGGCGCGGTCTGGCACCCGACCGATAGGCCGTCCAGCGTTTTATGAT
TCTCTTAATCTCACAACTGTTGCACCGCACAGATCTACTCAACCCGCCGC
TGCTGCTCAACAGGTCACGCCTACAGTGACCGATAGTCGCCCGCCTGTCC
CTCCGCCGCCACCCCCTCAGTTACAACCCGCGCCCTGGACACGCCCTCAG
CCCCCGCCTCCTCCATCACTTCCCCCGAGCACATCTGTGTCTCCAACTTC
AAAACCAGCGAAGACAGGAGGAGCGGACGCGGGCAAAGGCGCTGAGAGTG
AAAAGTCAGCTGATCAGGAGAAACCTTCAGAACAAGATCACGCCACATCA
ACGGGAAAGTCGAAACGGGCAGAGGAGAAGCGCCTTAGTGAGAGGGCTCG
TCGCGCTCAGCAAAGAGCTCAAAAGCAAAGATCAGGAAAACGCCCACGTC
CTGTTTTTCCGCCCATTCCGGAAGAGACTAAAGAGCCAACTTCTGTTCTC
GCTGTAGAAAAAGCTTATCATGCGTTGGTTGCTCCGAAATGGACCGGCGA
GGTTTCAGAGGCAGAGCCGTTGCTCATTCCCATTGAACTATATGTGACCA
TTGGCGAGAAAACCCTTCACATGTTTACTCAATGGGATGTAAACGAGCGA
CATCTTGCACCGGAAAACGTTGCTGATAACATCAGACGCGCAAGAGGACT
CCCCGAAGAGTTCGTTTCGCCTGTGGCGTTTCAAATTCGCCGAAGTCTTT
TCGAAGCCGGTGTGATTTGCCCGCCCCCACCTGATCTCTTGGAAGCAGAA
CACCGCCGTTTAATCAAGATTGTTGTGGAACTTAAAGATGGCGATACTGT
ACACGTCCTTCGCGATGAATTTGAATGGGATCTCGGGTATGGTAGTGCCA
ATTCTCCTGAGCTCTTTGCTCAACTACTTTGCACTGATGCCAACATATCC
CCAGAACATGCTCCTCAGGTTGCTCGAGCACTGCGAGCGCAGCTTGTTCG
GGCTCATGCTATTGCGTTTGGAGATGAAGAAACAAAAAAGTTGGCTCGGG
AAGGGCTGCCACAAGATGATCCTCTTCTTGACAACCTGCCTCCCGTTGGG
TCGGCTTTGATAAAATGCACTGCGGAGGATATTCGTGTAAGAGATCGAGA
AGAAAACGAGCTTGCCATTAGAAATCTTTTCGTCAGGCCTCTTCTCGATT
CTATTCCACTTGAATCCGAGCGGCGCAAGGCTGAACGCGTGAAAAAAGCG
GCTGAGGAAAGGCTAAGGCATGAACTTGAAATTGTTCGACGCATAGAACT
GGCCGAGTTAGCTAGGAGAAACGCTGACATCGAACGAGCACGTAAGGAAG
TCGACGAAGAAGCAGTTCAGGTATACCAAACACGGAACTTGGATTTCCGC
CCGTATTTGAAATTGCGAATTGCGCGAAACGAGAGTCCCAGTCTTTGGAT
GCCTGCTGCCTTCGATAGGAGAAGACGAAAGCAGCTCACTTTTCCGATGA
CGCAACCTTCACGAAAGACCAGTGGCCACAACATTCTTTTCTCAAGAATT
TCAAAAAGAAGGAGGTCAGGCGTGCGGAAGAGTCATGATGAAAAATCTAC
TGGACGCACGATGGAAAAGAGCGAGGTCCATGTTACGAAGAAGCAAAAGA
CAGAACCAACAGTTCAATCAAGCCAGTCATTGCCACCGGATGAGGACAGA
AAGGTTATGCTAAGGCTTAGAGTGAGAAATCCGTACAATACATCTCAGAA
GAAGACACCAGCCCCAAAACGCCGACGTTGA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:10450..12780-

>Gcaud2185.t1 ID=Gcaud2185.t1|Name=Gcaud2185.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2331bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:10450..12780- (Gracilaria caudata M_176_S67 male)
ATGCGAGGTTCTACTGCAAACATGCCATCAGAAGAAGCTCTGCGAGAAAT
GATGCGTGCCGCCGCCGCCACCGCCTCTGCCGCTGCCGGAGATGCATCGG
TCGCCGCAGCCGCAGTTACTACTTCAGAGGCCACGCGCTATGTTCGCCAC
TCAACTGGCCGCTCTTCCGCAAACCGCCGCCAAAGCATCAGCATGCTTCC
GCCAACCCTGGGCGGTGAGCAGTTTCGACAGGGTGCCCCGCTGCCTCCCG
TCGATGGCGGCGTCAGGTGGAAGAAGATTCAAGCCGTCGCTCGAGAAATT
GCCGCCAAATGGACCCATCCTCCTGGCTCTTCGCAATACGAAACACCTAC
GCTTCATAATGTGCGCGCAATTCTGTACATGAACAAGAGCCTCATCACTC
AGTCTTTTGTGTCCCATGTTTCTGGTGTTTCTCAGGGAAGTTTGAGTCAT
TACGTGCGCGGTCTCTTCCGTGGAAATCAGAAGAACGTTGATGACCGACT
TGCGATATTCGTCGAGAAGTTTGCGGAAGGACATCTTGACAAGTTTTTGG
AAGAGGCGCGGTCTGGCACCCGACCGATAGGCCGTCCAGCGTTTTATGAT
TCTCTTAATCTCACAACTGTTGCACCGCACAGATCTACTCAACCCGCCGC
TGCTGCTCAACAGGTCACGCCTACAGTGACCGATAGTCGCCCGCCTGTCC
CTCCGCCGCCACCCCCTCAGTTACAACCCGCGCCCTGGACACGCCCTCAG
CCCCCGCCTCCTCCATCACTTCCCCCGAGCACATCTGTGTCTCCAACTTC
AAAACCAGCGAAGACAGGAGGAGCGGACGCGGGCAAAGGCGCTGAGAGTG
AAAAGTCAGCTGATCAGGAGAAACCTTCAGAACAAGATCACGCCACATCA
ACGGGAAAGTCGAAACGGGCAGAGGAGAAGCGCCTTAGTGAGAGGGCTCG
TCGCGCTCAGCAAAGAGCTCAAAAGCAAAGATCAGGAAAACGCCCACGTC
CTGTTTTTCCGCCCATTCCGGAAGAGACTAAAGAGCCAACTTCTGTTCTC
GCTGTAGAAAAAGCTTATCATGCGTTGGTTGCTCCGAAATGGACCGGCGA
GGTTTCAGAGGCAGAGCCGTTGCTCATTCCCATTGAACTATATGTGACCA
TTGGCGAGAAAACCCTTCACATGTTTACTCAATGGGATGTAAACGAGCGA
CATCTTGCACCGGAAAACGTTGCTGATAACATCAGACGCGCAAGAGGACT
CCCCGAAGAGTTCGTTTCGCCTGTGGCGTTTCAAATTCGCCGAAGTCTTT
TCGAAGCCGGTGTGATTTGCCCGCCCCCACCTGATCTCTTGGAAGCAGAA
CACCGCCGTTTAATCAAGATTGTTGTGGAACTTAAAGATGGCGATACTGT
ACACGTCCTTCGCGATGAATTTGAATGGGATCTCGGGTATGGTAGTGCCA
ATTCTCCTGAGCTCTTTGCTCAACTACTTTGCACTGATGCCAACATATCC
CCAGAACATGCTCCTCAGGTTGCTCGAGCACTGCGAGCGCAGCTTGTTCG
GGCTCATGCTATTGCGTTTGGAGATGAAGAAACAAAAAAGTTGGCTCGGG
AAGGGCTGCCACAAGATGATCCTCTTCTTGACAACCTGCCTCCCGTTGGG
TCGGCTTTGATAAAATGCACTGCGGAGGATATTCGTGTAAGAGATCGAGA
AGAAAACGAGCTTGCCATTAGAAATCTTTTCGTCAGGCCTCTTCTCGATT
CTATTCCACTTGAATCCGAGCGGCGCAAGGCTGAACGCGTGAAAAAAGCG
GCTGAGGAAAGGCTAAGGCATGAACTTGAAATTGTTCGACGCATAGAACT
GGCCGAGTTAGCTAGGAGAAACGCTGACATCGAACGAGCACGTAAGGAAG
TCGACGAAGAAGCAGTTCAGGTATACCAAACACGGAACTTGGATTTCCGC
CCGTATTTGAAATTGCGAATTGCGCGAAACGAGAGTCCCAGTCTTTGGAT
GCCTGCTGCCTTCGATAGGAGAAGACGAAAGCAGCTCACTTTTCCGATGA
CGCAACCTTCACGAAAGACCAGTGGCCACAACATTCTTTTCTCAAGAATT
TCAAAAAGAAGGAGGTCAGGCGTGCGGAAGAGTCATGATGAAAAATCTAC
TGGACGCACGATGGAAAAGAGCGAGGTCCATGTTACGAAGAAGCAAAAGA
CAGAACCAACAGTTCAATCAAGCCAGTCATTGCCACCGGATGAGGACAGA
AAGGTTATGCTAAGGCTTAGAGTGAGAAATCCGTACAATACATCTCAGAA
GAAGACACCAGCCCCAAAACGCCGACGTTGA