Gcaud1922.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1922.t1
Unique Name	Gcaud1922.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	257

Homology

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BLAST of Gcaud1922.t1 vs. uniprot
Match: A0A2V3IPV8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV8_9FLOR)

HSP 1 Score: 260 bits (664), Expect = 5.950e-84
Identity = 177/265 (66.79%), Postives = 198/265 (74.72%), Query Frame = 0

Query:    1 MNSFALLQDDVEDVSELAYDNGATQKTDGD-TPVPAVDVRDAAV-----SEAP--EDVNGADPAPTSAEPDQEDANKSDQKPPKQKDLTLEEYLAKKAAMSSGLASLNSRGLRRANDGDNGFEKMSVLKKNNSPDDNSIMREVAVKAQQQNKTIKDSTQAAVARNAEIQKFFKPDPTERRRGEYRRPYGERRGGTRG-RFEHRGDRGRXXXXXXXXXGRGAYRXXXXXXXNNRPYDNETDHRRANGREDVDVVPNVDDTSAFPSL 256
            MNSFALLQDDVED SEL  DN A+ K   D   VPAVDV+DAAV     S AP  +D   ADP   +      D ++ DQKP KQ+DLTLEEYL KKAAMSSGLASLNSRGLR+ NDG +GFEKMSVLKKN++PDDNSIMR+VAVKAQQQ KTIKDSTQAAVARNAEIQKFFKPDP++RRRG+YRR Y +RRG  RG R         XXXXXXXXX RGAYR            D++ DHRRANGR+D D+VP+VDDTSAFPSL
Sbjct:    1 MNSFALLQDDVEDASELTPDNVASSKPHVDEVAVPAVDVQDAAVNQNDDSSAPHHDDALAADPQAPA------DKDQPDQKPLKQRDLTLEEYLEKKAAMSSGLASLNSRGLRQPNDGVDGFEKMSVLKKNDAPDDNSIMRDVAVKAQQQAKTIKDSTQAAVARNAEIQKFFKPDPSDRRRGDYRRGYRDRRGAGRGTRGMXXXXXXXXXXXXXXXXXRGAYRGGYTTHN-----DDDFDHRRANGRDDQDIVPDVDDTSAFPSL 254

[Close]

BLAST of Gcaud1922.t1 vs. uniprot
Match: R7Q4V9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4V9_CHOCR)

HSP 1 Score: 123 bits (308), Expect = 5.790e-30
Identity = 96/190 (50.53%), Postives = 117/190 (61.58%), Query Frame = 0

Query:    1 MNSFALLQDDVEDVSELAYDNGATQKTDGDTPVPAVDVRDAAVSEAPEDVNGADPAPTSAEPDQEDANKSDQKPPKQKDLTLEEYLAKKAAMSSGLASLNSRGLRRANDG-DNGFEKMSVLKKNN---SPDDNSIMREVAVKAQQQNKTIKDSTQAAVARNAEIQKFFKPDPTERRRGEYRRPYGERRGG 186
            MNSFALLQDDVED ++LA     ++ T  +TP  AV    A   +       AD A TSA P   D     +  PK+KDLTLEEYLA+KA  SS L SL S+G R+ NDG  +GFE MS+L K++    P  +S+M  V VK Q +NK +KDST AAVA+NAEIQ FFK DP   RR +Y  P   RRGG
Sbjct:    1 MNSFALLQDDVEDATDLAV---PSKGTPAETPAEAVQDARATADDTAAPSTDADAA-TSANP--ADPEGKPRPTPKEKDLTLEEYLAQKAQKSSSLTSL-SKGARKPNDGVSSGFENMSLLNKDDPAHGPAKDSLMGSVPVKEQHENKALKDSTHAAVAKNAEIQSFFKRDPASDRR-QYSGP---RRGG 179

The following BLAST results are available for this feature:

BLAST of Gcaud1922.t1 vs. uniprot

BLAST of Gcaud1922.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IPV8_9FLOR	5.950e-84	66.79	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7Q4V9_CHOCR	5.790e-30	50.53	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..156

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:15319..16089 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1922.t1	Gcaud1922.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_105_length_50300_cov_4.471768 15319..16089 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1922.t1 ID=Gcaud1922.t1|Name=Gcaud1922.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MNSFALLQDDVEDVSELAYDNGATQKTDGDTPVPAVDVRDAAVSEAPEDV
NGADPAPTSAEPDQEDANKSDQKPPKQKDLTLEEYLAKKAAMSSGLASLN
SRGLRRANDGDNGFEKMSVLKKNNSPDDNSIMREVAVKAQQQNKTIKDST
QAAVARNAEIQKFFKPDPTERRRGEYRRPYGERRGGTRGRFEHRGDRGRG
ERGRGGRGGRGAYRGGYRGGYNNRPYDNETDHRRANGREDVDVVPNVDDT
SAFPSL*