Gcaud2190.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2190.t1
Unique Name	Gcaud2190.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	265

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:29066..30079 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704806.1
PFAMs	Pro_isomerase
Max annot lvl	2759\|Eukaryota
Evalue	6.61e-61
EggNOG OGs	COG0652@1\|root,2QSSP@2759\|Eukaryota
Description	peptidyl-prolyl cis-trans isomerase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2190	Gcaud2190	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 29066..30079 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2190.t1	Gcaud2190.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 29066..30079 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2190.t1.stop1	Gcaud2190.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 29066..29068 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2190.t1.CDS1	Gcaud2190.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 29066..29723 -
Gcaud2190.t1.CDS2	Gcaud2190.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 29831..29942 -
Gcaud2190.t1.CDS3	Gcaud2190.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 30055..30079 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2190.t1.exon1	Gcaud2190.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 29066..29723 -
Gcaud2190.t1.exon2	Gcaud2190.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 29831..29942 -
Gcaud2190.t1.exon3	Gcaud2190.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 30055..30079 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2190.t1.intron1	Gcaud2190.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_19_length_78712_cov_4.326007 29724..29830 -
Gcaud2190.t1.intron2	Gcaud2190.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_19_length_78712_cov_4.326007 29943..30054 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2190.t1.start1	Gcaud2190.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 30077..30079 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:29066..30079-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:29066..30079-

mRNA sequence

>Gcaud2190.t1 ID=Gcaud2190.t1|Name=Gcaud2190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=265bp
MSKKTNFDAAVVEQFRQQALDHVADIEQIAVEGIGLPFKIPRRYNEFPRL
VGRALVQLNLRKGGDATWKDPITLKPLGKDLTITAVLDGFSAPLTCGNFV
DIARRGYYDNTKILATQKDFFAQMGEREDDNFDGFKDPKSGKRRQIPLEI
LADGEPSPAYGATLDELGIGDLQPVLPVSAFGAMAMVHSVEDANDASSQF
YLFMLDPTSYQARSFGGSVLTGSISTFGYVDDGKQFLPQLQVGDKIASVK
MISGVNNFVERGDS*

spliced messenger RNA

>Gcaud2190.t1 ID=Gcaud2190.t1|Name=Gcaud2190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=795bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:29066..30079- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAAGAAAACAAATTTCGATGCTGCTGTGGTGGAGCAATTCAGACA
GCAGGCTTTGGACCATGTTGCAGATATCGAACAAATTGCTGTGGAAGGTA
TTGGGTTACCTTTCAAGATTCCACGTCGCTACAACGAATTTCCGCGCCTT
GTTGGCAGGGCCCTGGTACAGCTCAATCTGAGGAAAGGAGGAGATGCAAC
ATGGAAAGACCCCATCACATTAAAACCTCTTGGAAAAGATCTAACAATAA
CGGCTGTTCTGGACGGTTTCTCAGCTCCCCTAACATGCGGTAATTTCGTA
GACATTGCGCGCCGTGGGTACTACGATAACACGAAGATTCTGGCTACACA
AAAGGACTTTTTCGCCCAAATGGGAGAGAGAGAAGATGATAATTTTGACG
GTTTCAAGGACCCAAAGTCTGGAAAGAGAAGACAAATCCCTTTAGAAATC
TTGGCGGATGGTGAACCATCTCCTGCGTATGGCGCAACTTTGGACGAACT
CGGAATAGGTGATTTACAACCTGTTCTACCTGTTTCTGCTTTCGGTGCTA
TGGCAATGGTGCATAGTGTGGAAGACGCGAATGACGCCTCTTCGCAATTC
TACCTTTTCATGCTTGATCCAACGTCATATCAGGCCAGATCTTTCGGTGG
CAGTGTGTTGACCGGAAGCATATCGACGTTTGGGTACGTGGATGATGGTA
AACAGTTTCTGCCGCAGTTGCAAGTTGGGGATAAGATAGCATCGGTGAAG
ATGATCTCTGGAGTTAACAACTTTGTAGAGCGTGGCGACAGCTAA

protein sequence of Gcaud2190.t1

>Gcaud2190.t1 ID=Gcaud2190.t1|Name=Gcaud2190.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=265bp
MSKKTNFDAAVVEQFRQQALDHVADIEQIAVEGIGLPFKIPRRYNEFPRL
VGRALVQLNLRKGGDATWKDPITLKPLGKDLTITAVLDGFSAPLTCGNFV
DIARRGYYDNTKILATQKDFFAQMGEREDDNFDGFKDPKSGKRRQIPLEI
LADGEPSPAYGATLDELGIGDLQPVLPVSAFGAMAMVHSVEDANDASSQF
YLFMLDPTSYQARSFGGSVLTGSISTFGYVDDGKQFLPQLQVGDKIASVK
MISGVNNFVERGDS*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:29066..30079-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2190.t1 ID=Gcaud2190.t1|Name=Gcaud2190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:29066..30079- (Gracilaria caudata M_176_S67 male)
ATGTCTAAGAAAACAAATTTCGATGGTATGTTGAGTTCATTTCCTCGTTG
CTTGCACTACGGGCTCTCCTAGCCTACTAACGTTCTGCTTACATGCATTG
TTATGGGATGCATCGTTTTTGCTGCTCCCTTTTCAAGCTGCTGTGGTGGA
GCAATTCAGACAGCAGGCTTTGGACCATGTTGCAGATATCGAACAAATTG
CTGTGGAAGGTATTGGGTTACCTTTCAAGATTCCACGTCGCTACAACGAG
TAAGTGTACATTTTCGTGTCCGCCAACAATTGCGTCACGAATCTACACTA
CGTTGACACTGACTTGCAAACGCGCCTACTCTTGTATTGCAATGTTGCCT
TTGCAGATTTCCGCGCCTTGTTGGCAGGGCCCTGGTACAGCTCAATCTGA
GGAAAGGAGGAGATGCAACATGGAAAGACCCCATCACATTAAAACCTCTT
GGAAAAGATCTAACAATAACGGCTGTTCTGGACGGTTTCTCAGCTCCCCT
AACATGCGGTAATTTCGTAGACATTGCGCGCCGTGGGTACTACGATAACA
CGAAGATTCTGGCTACACAAAAGGACTTTTTCGCCCAAATGGGAGAGAGA
GAAGATGATAATTTTGACGGTTTCAAGGACCCAAAGTCTGGAAAGAGAAG
ACAAATCCCTTTAGAAATCTTGGCGGATGGTGAACCATCTCCTGCGTATG
GCGCAACTTTGGACGAACTCGGAATAGGTGATTTACAACCTGTTCTACCT
GTTTCTGCTTTCGGTGCTATGGCAATGGTGCATAGTGTGGAAGACGCGAA
TGACGCCTCTTCGCAATTCTACCTTTTCATGCTTGATCCAACGTCATATC
AGGCCAGATCTTTCGGTGGCAGTGTGTTGACCGGAAGCATATCGACGTTT
GGGTACGTGGATGATGGTAAACAGTTTCTGCCGCAGTTGCAAGTTGGGGA
TAAGATAGCATCGGTGAAGATGATCTCTGGAGTTAACAACTTTGTAGAGC
GTGGCGACAGCTAA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:29066..30079-

>Gcaud2190.t1 ID=Gcaud2190.t1|Name=Gcaud2190.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=795bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:29066..30079- (Gracilaria caudata M_176_S67 male)
ATGTCTAAGAAAACAAATTTCGATGCTGCTGTGGTGGAGCAATTCAGACA
GCAGGCTTTGGACCATGTTGCAGATATCGAACAAATTGCTGTGGAAGGTA
TTGGGTTACCTTTCAAGATTCCACGTCGCTACAACGAATTTCCGCGCCTT
GTTGGCAGGGCCCTGGTACAGCTCAATCTGAGGAAAGGAGGAGATGCAAC
ATGGAAAGACCCCATCACATTAAAACCTCTTGGAAAAGATCTAACAATAA
CGGCTGTTCTGGACGGTTTCTCAGCTCCCCTAACATGCGGTAATTTCGTA
GACATTGCGCGCCGTGGGTACTACGATAACACGAAGATTCTGGCTACACA
AAAGGACTTTTTCGCCCAAATGGGAGAGAGAGAAGATGATAATTTTGACG
GTTTCAAGGACCCAAAGTCTGGAAAGAGAAGACAAATCCCTTTAGAAATC
TTGGCGGATGGTGAACCATCTCCTGCGTATGGCGCAACTTTGGACGAACT
CGGAATAGGTGATTTACAACCTGTTCTACCTGTTTCTGCTTTCGGTGCTA
TGGCAATGGTGCATAGTGTGGAAGACGCGAATGACGCCTCTTCGCAATTC
TACCTTTTCATGCTTGATCCAACGTCATATCAGGCCAGATCTTTCGGTGG
CAGTGTGTTGACCGGAAGCATATCGACGTTTGGGTACGTGGATGATGGTA
AACAGTTTCTGCCGCAGTTGCAAGTTGGGGATAAGATAGCATCGGTGAAG
ATGATCTCTGGAGTTAACAACTTTGTAGAGCGTGGCGACAGCTAA