Gcaud1922.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1922.t1
Unique Name	Gcaud1922.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	257

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:15319..16089 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1922	Gcaud1922	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 15319..16089 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1922.t1.stop1	Gcaud1922.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 15319..15321 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1922.t1.CDS1	Gcaud1922.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 15319..16089 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1922.t1.exon1	Gcaud1922.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 15319..16089 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1922.t1.start1	Gcaud1922.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 16087..16089 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1922.t1	Gcaud1922.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 15319..16089 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:15319..16089-
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:15319..16089-

mRNA sequence

>Gcaud1922.t1 ID=Gcaud1922.t1|Name=Gcaud1922.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=257bp
MNSFALLQDDVEDVSELAYDNGATQKTDGDTPVPAVDVRDAAVSEAPEDV
NGADPAPTSAEPDQEDANKSDQKPPKQKDLTLEEYLAKKAAMSSGLASLN
SRGLRRANDGDNGFEKMSVLKKNNSPDDNSIMREVAVKAQQQNKTIKDST
QAAVARNAEIQKFFKPDPTERRRGEYRRPYGERRGGTRGRFEHRGDRGRG
ERGRGGRGGRGAYRGGYRGGYNNRPYDNETDHRRANGREDVDVVPNVDDT
SAFPSL*

spliced messenger RNA

>Gcaud1922.t1 ID=Gcaud1922.t1|Name=Gcaud1922.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:15319..16089- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCGTTCGCGTTGTTGCAGGACGACGTTGAGGATGTTTCCGAGCT
GGCTTATGATAATGGCGCCACCCAGAAGACCGATGGTGACACTCCCGTCC
CCGCCGTTGATGTGCGTGATGCTGCCGTCAGTGAGGCTCCGGAAGATGTA
AACGGTGCGGATCCCGCCCCTACCTCCGCTGAGCCCGACCAGGAAGACGC
CAACAAGTCCGATCAGAAGCCCCCAAAGCAAAAGGATCTCACCCTGGAAG
AGTACTTAGCCAAGAAGGCTGCCATGTCCTCCGGTCTCGCTTCTCTCAAC
AGCCGCGGTCTTAGACGAGCCAATGACGGCGACAATGGTTTTGAGAAGAT
GAGTGTGTTGAAGAAGAATAACTCTCCTGATGACAATTCTATCATGCGTG
AAGTGGCTGTCAAAGCGCAGCAGCAAAACAAGACAATAAAAGATTCCACG
CAGGCCGCCGTGGCAAGAAACGCTGAGATCCAAAAGTTCTTCAAGCCTGA
TCCGACTGAGAGAAGACGCGGCGAATACCGACGCCCCTATGGAGAGCGAC
GAGGGGGAACACGTGGAAGATTTGAGCACAGAGGAGACAGAGGTAGGGGA
GAGAGAGGACGAGGCGGAAGAGGCGGAAGAGGAGCTTATCGTGGAGGCTA
TCGTGGAGGTTATAACAACAGACCGTATGACAATGAGACTGATCACCGAA
GGGCTAATGGCAGGGAGGACGTTGACGTTGTGCCAAACGTGGACGATACG
TCGGCTTTTCCAAGTCTGTAA

protein sequence of Gcaud1922.t1

>Gcaud1922.t1 ID=Gcaud1922.t1|Name=Gcaud1922.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MNSFALLQDDVEDVSELAYDNGATQKTDGDTPVPAVDVRDAAVSEAPEDV
NGADPAPTSAEPDQEDANKSDQKPPKQKDLTLEEYLAKKAAMSSGLASLN
SRGLRRANDGDNGFEKMSVLKKNNSPDDNSIMREVAVKAQQQNKTIKDST
QAAVARNAEIQKFFKPDPTERRRGEYRRPYGERRGGTRGRFEHRGDRGRG
ERGRGGRGGRGAYRGGYRGGYNNRPYDNETDHRRANGREDVDVVPNVDDT
SAFPSL*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:15319..16089-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1922.t1 ID=Gcaud1922.t1|Name=Gcaud1922.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:15319..16089- (Gracilaria caudata M_176_S67 male)
ATGAATTCGTTCGCGTTGTTGCAGGACGACGTTGAGGATGTTTCCGAGCT
GGCTTATGATAATGGCGCCACCCAGAAGACCGATGGTGACACTCCCGTCC
CCGCCGTTGATGTGCGTGATGCTGCCGTCAGTGAGGCTCCGGAAGATGTA
AACGGTGCGGATCCCGCCCCTACCTCCGCTGAGCCCGACCAGGAAGACGC
CAACAAGTCCGATCAGAAGCCCCCAAAGCAAAAGGATCTCACCCTGGAAG
AGTACTTAGCCAAGAAGGCTGCCATGTCCTCCGGTCTCGCTTCTCTCAAC
AGCCGCGGTCTTAGACGAGCCAATGACGGCGACAATGGTTTTGAGAAGAT
GAGTGTGTTGAAGAAGAATAACTCTCCTGATGACAATTCTATCATGCGTG
AAGTGGCTGTCAAAGCGCAGCAGCAAAACAAGACAATAAAAGATTCCACG
CAGGCCGCCGTGGCAAGAAACGCTGAGATCCAAAAGTTCTTCAAGCCTGA
TCCGACTGAGAGAAGACGCGGCGAATACCGACGCCCCTATGGAGAGCGAC
GAGGGGGAACACGTGGAAGATTTGAGCACAGAGGAGACAGAGGTAGGGGA
GAGAGAGGACGAGGCGGAAGAGGCGGAAGAGGAGCTTATCGTGGAGGCTA
TCGTGGAGGTTATAACAACAGACCGTATGACAATGAGACTGATCACCGAA
GGGCTAATGGCAGGGAGGACGTTGACGTTGTGCCAAACGTGGACGATACG
TCGGCTTTTCCAAGTCTGTAA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:15319..16089-

>Gcaud1922.t1 ID=Gcaud1922.t1|Name=Gcaud1922.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=771bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:15319..16089- (Gracilaria caudata M_176_S67 male)
ATGAATTCGTTCGCGTTGTTGCAGGACGACGTTGAGGATGTTTCCGAGCT
GGCTTATGATAATGGCGCCACCCAGAAGACCGATGGTGACACTCCCGTCC
CCGCCGTTGATGTGCGTGATGCTGCCGTCAGTGAGGCTCCGGAAGATGTA
AACGGTGCGGATCCCGCCCCTACCTCCGCTGAGCCCGACCAGGAAGACGC
CAACAAGTCCGATCAGAAGCCCCCAAAGCAAAAGGATCTCACCCTGGAAG
AGTACTTAGCCAAGAAGGCTGCCATGTCCTCCGGTCTCGCTTCTCTCAAC
AGCCGCGGTCTTAGACGAGCCAATGACGGCGACAATGGTTTTGAGAAGAT
GAGTGTGTTGAAGAAGAATAACTCTCCTGATGACAATTCTATCATGCGTG
AAGTGGCTGTCAAAGCGCAGCAGCAAAACAAGACAATAAAAGATTCCACG
CAGGCCGCCGTGGCAAGAAACGCTGAGATCCAAAAGTTCTTCAAGCCTGA
TCCGACTGAGAGAAGACGCGGCGAATACCGACGCCCCTATGGAGAGCGAC
GAGGGGGAACACGTGGAAGATTTGAGCACAGAGGAGACAGAGGTAGGGGA
GAGAGAGGACGAGGCGGAAGAGGCGGAAGAGGAGCTTATCGTGGAGGCTA
TCGTGGAGGTTATAACAACAGACCGTATGACAATGAGACTGATCACCGAA
GGGCTAATGGCAGGGAGGACGTTGACGTTGTGCCAAACGTGGACGATACG
TCGGCTTTTCCAAGTCTGTAA