Gcaud9336.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9336.t1
Unique Name	Gcaud9336.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	593

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_199_length_38196_cov_4.525364	contig	NODE_199_length_38196_cov_4.525364:3719..5497 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708950.1
PFAMs	DUF563
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00005,RC00059
KEGG ko	ko:K18134
KEGG Reaction	R09304,R09676
KEGG Pathway	ko00514,map00514
Evalue	1.3e-09
EggNOG OGs	29MVY@1\|root,2RV66@2759\|Eukaryota
EC	2.4.1.255
Description	Protein of unknown function (DUF563)
COG category	S
CAZy	GT41
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9336	Gcaud9336	Gracilaria caudata M_176_S67 male	gene	NODE_199_length_38196_cov_4.525364 3719..5497 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9336.t1.start1	Gcaud9336.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_199_length_38196_cov_4.525364 3719..3721 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9336.t1.CDS1	Gcaud9336.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_199_length_38196_cov_4.525364 3719..5497 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9336.t1.exon1	Gcaud9336.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_199_length_38196_cov_4.525364 3719..5497 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9336.t1.stop1	Gcaud9336.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_199_length_38196_cov_4.525364 5495..5497 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9336.t1	Gcaud9336.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_199_length_38196_cov_4.525364 3719..5497 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_199_length_38196_cov_4.525364:3719..5497+
coding sequence from alignment at NODE_199_length_38196_cov_4.525364:3719..5497+

mRNA sequence

>Gcaud9336.t1 ID=Gcaud9336.t1|Name=Gcaud9336.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=593bp
MAAKLRFRTHSKAGKLFLPLKRPPRLSPRLLSYVALFCFLSCLAVAFRQF
NYLYHLTHPDVVPGSPHSRSQSRASSFTPHGVARIEESVNLWRHEDRDCP
PEENPPPQSLYATGSERCFALGLPDAVNRTLQKGDPASFWQMNSRALCYS
ARPICLYGRSMRNLLSFEERGMSRCQVLSVERNKLYEASQVGLNESCAAF
RNRFVASMYGKEVFYSYEHWEEYIKSKTYKNPRHHAVGWHSDFAIIVPKY
NWSYNICHYNRIWNFIMYVIRNLHLFVPDADEIQHIDVLFRSGYKYNQHW
HVGIRESTLPYLEKQVGKSISVSKIRYDYLRDYQCIRRGILLGKEARIDA
FPFFNDTAVWRPEELVTDTHWPAIPHDSLWLRNAVLTENGLGSLATSVVD
GVEQFDHIRIPPRRLGFLERSPRSKRRLTPSGKIWLENTLEELCKKHGME
YKHIRTSGAMTFKEQVSQLQSIGLAVGIHGANMVNTVFMPAAGAIFEIFP
WRYVRYYYASGSNSGLRYSFHEPEHGFQRNCSFSETTCFMKYRESVIYLT
EADREVIHKRLENAIMYITDLHRMFPEGVIPLRKEGNLYQFG*

spliced messenger RNA

>Gcaud9336.t1 ID=Gcaud9336.t1|Name=Gcaud9336.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:3719..5497+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGAAGCTTCGCTTCCGTACTCACTCGAAAGCGGGCAAGCTCTT
CCTGCCGCTCAAACGTCCGCCCAGACTCTCTCCCCGCCTTCTCTCCTATG
TCGCCCTTTTCTGTTTCCTCTCATGTCTGGCAGTCGCATTCCGTCAATTT
AACTACCTCTACCATTTGACGCACCCGGATGTCGTGCCGGGCAGCCCGCA
CTCCCGATCCCAATCACGCGCCTCGTCATTCACCCCTCATGGAGTGGCAA
GAATAGAAGAATCTGTTAACCTGTGGCGACATGAAGACCGCGATTGCCCG
CCAGAAGAAAACCCTCCTCCGCAGTCTTTGTATGCCACTGGGTCCGAGCG
ATGCTTTGCGTTGGGCCTACCAGATGCCGTCAATAGGACTTTGCAGAAAG
GTGACCCTGCTTCATTCTGGCAAATGAATAGTAGAGCACTGTGCTACTCC
GCGCGTCCAATCTGTTTGTATGGCAGAAGCATGAGGAACTTGTTATCGTT
TGAAGAGCGCGGAATGTCCAGGTGCCAAGTGCTTTCCGTAGAGCGCAATA
AGCTGTACGAAGCATCTCAAGTCGGGCTCAACGAGTCGTGCGCAGCCTTT
CGAAACCGTTTTGTTGCTAGCATGTATGGAAAGGAAGTGTTTTACTCGTA
TGAGCACTGGGAGGAGTACATCAAATCAAAGACATACAAGAATCCTAGAC
ACCATGCTGTGGGCTGGCACTCCGATTTTGCAATCATCGTTCCCAAATAC
AACTGGTCCTACAACATCTGTCACTACAATCGCATATGGAATTTCATCAT
GTATGTTATTCGAAATCTTCATCTTTTTGTTCCGGATGCCGATGAGATCC
AGCACATTGATGTTTTGTTCCGTTCCGGGTACAAGTACAATCAGCATTGG
CATGTTGGAATACGAGAAAGCACGCTGCCGTACCTGGAAAAACAGGTTGG
CAAGTCAATTAGCGTCTCGAAGATACGTTACGATTATTTACGTGACTATC
AGTGCATTCGAAGGGGCATTCTGCTCGGAAAAGAAGCTAGAATCGATGCC
TTTCCGTTTTTCAACGATACCGCAGTGTGGCGACCCGAAGAGCTTGTTAC
TGATACTCATTGGCCCGCAATTCCGCATGACTCGCTTTGGCTGCGCAACG
CTGTACTCACCGAGAACGGTTTAGGTTCTCTCGCGACCTCTGTGGTAGAC
GGAGTCGAACAGTTTGATCATATTCGCATACCACCACGGAGATTAGGTTT
TCTCGAGAGATCACCACGGTCAAAACGCCGACTCACACCAAGCGGCAAAA
TATGGTTGGAAAACACTTTGGAAGAGCTTTGTAAGAAGCACGGTATGGAG
TATAAGCATATTCGTACGAGCGGCGCTATGACGTTTAAGGAACAAGTGAG
CCAGTTGCAATCGATTGGACTGGCCGTTGGAATTCATGGAGCGAACATGG
TGAATACTGTCTTCATGCCAGCAGCAGGTGCAATTTTCGAGATTTTCCCG
TGGCGATATGTGCGATACTATTATGCGAGCGGAAGCAACTCTGGACTGAG
ATACAGTTTTCACGAACCGGAGCATGGGTTTCAGCGCAATTGTAGTTTCT
CTGAGACAACTTGTTTCATGAAGTATCGAGAATCTGTCATTTATCTCACG
GAAGCAGATCGAGAGGTGATTCACAAGCGACTTGAGAATGCTATCATGTA
CATTACTGACTTGCATCGAATGTTTCCGGAAGGTGTAATACCTTTGAGAA
AAGAAGGAAACTTGTATCAATTTGGATAA

protein sequence of Gcaud9336.t1

>Gcaud9336.t1 ID=Gcaud9336.t1|Name=Gcaud9336.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=593bp
MAAKLRFRTHSKAGKLFLPLKRPPRLSPRLLSYVALFCFLSCLAVAFRQF
NYLYHLTHPDVVPGSPHSRSQSRASSFTPHGVARIEESVNLWRHEDRDCP
PEENPPPQSLYATGSERCFALGLPDAVNRTLQKGDPASFWQMNSRALCYS
ARPICLYGRSMRNLLSFEERGMSRCQVLSVERNKLYEASQVGLNESCAAF
RNRFVASMYGKEVFYSYEHWEEYIKSKTYKNPRHHAVGWHSDFAIIVPKY
NWSYNICHYNRIWNFIMYVIRNLHLFVPDADEIQHIDVLFRSGYKYNQHW
HVGIRESTLPYLEKQVGKSISVSKIRYDYLRDYQCIRRGILLGKEARIDA
FPFFNDTAVWRPEELVTDTHWPAIPHDSLWLRNAVLTENGLGSLATSVVD
GVEQFDHIRIPPRRLGFLERSPRSKRRLTPSGKIWLENTLEELCKKHGME
YKHIRTSGAMTFKEQVSQLQSIGLAVGIHGANMVNTVFMPAAGAIFEIFP
WRYVRYYYASGSNSGLRYSFHEPEHGFQRNCSFSETTCFMKYRESVIYLT
EADREVIHKRLENAIMYITDLHRMFPEGVIPLRKEGNLYQFG*

mRNA from alignment at NODE_199_length_38196_cov_4.525364:3719..5497+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9336.t1 ID=Gcaud9336.t1|Name=Gcaud9336.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:3719..5497+ (Gracilaria caudata M_176_S67 male)
ATGGCGGCGAAGCTTCGCTTCCGTACTCACTCGAAAGCGGGCAAGCTCTT
CCTGCCGCTCAAACGTCCGCCCAGACTCTCTCCCCGCCTTCTCTCCTATG
TCGCCCTTTTCTGTTTCCTCTCATGTCTGGCAGTCGCATTCCGTCAATTT
AACTACCTCTACCATTTGACGCACCCGGATGTCGTGCCGGGCAGCCCGCA
CTCCCGATCCCAATCACGCGCCTCGTCATTCACCCCTCATGGAGTGGCAA
GAATAGAAGAATCTGTTAACCTGTGGCGACATGAAGACCGCGATTGCCCG
CCAGAAGAAAACCCTCCTCCGCAGTCTTTGTATGCCACTGGGTCCGAGCG
ATGCTTTGCGTTGGGCCTACCAGATGCCGTCAATAGGACTTTGCAGAAAG
GTGACCCTGCTTCATTCTGGCAAATGAATAGTAGAGCACTGTGCTACTCC
GCGCGTCCAATCTGTTTGTATGGCAGAAGCATGAGGAACTTGTTATCGTT
TGAAGAGCGCGGAATGTCCAGGTGCCAAGTGCTTTCCGTAGAGCGCAATA
AGCTGTACGAAGCATCTCAAGTCGGGCTCAACGAGTCGTGCGCAGCCTTT
CGAAACCGTTTTGTTGCTAGCATGTATGGAAAGGAAGTGTTTTACTCGTA
TGAGCACTGGGAGGAGTACATCAAATCAAAGACATACAAGAATCCTAGAC
ACCATGCTGTGGGCTGGCACTCCGATTTTGCAATCATCGTTCCCAAATAC
AACTGGTCCTACAACATCTGTCACTACAATCGCATATGGAATTTCATCAT
GTATGTTATTCGAAATCTTCATCTTTTTGTTCCGGATGCCGATGAGATCC
AGCACATTGATGTTTTGTTCCGTTCCGGGTACAAGTACAATCAGCATTGG
CATGTTGGAATACGAGAAAGCACGCTGCCGTACCTGGAAAAACAGGTTGG
CAAGTCAATTAGCGTCTCGAAGATACGTTACGATTATTTACGTGACTATC
AGTGCATTCGAAGGGGCATTCTGCTCGGAAAAGAAGCTAGAATCGATGCC
TTTCCGTTTTTCAACGATACCGCAGTGTGGCGACCCGAAGAGCTTGTTAC
TGATACTCATTGGCCCGCAATTCCGCATGACTCGCTTTGGCTGCGCAACG
CTGTACTCACCGAGAACGGTTTAGGTTCTCTCGCGACCTCTGTGGTAGAC
GGAGTCGAACAGTTTGATCATATTCGCATACCACCACGGAGATTAGGTTT
TCTCGAGAGATCACCACGGTCAAAACGCCGACTCACACCAAGCGGCAAAA
TATGGTTGGAAAACACTTTGGAAGAGCTTTGTAAGAAGCACGGTATGGAG
TATAAGCATATTCGTACGAGCGGCGCTATGACGTTTAAGGAACAAGTGAG
CCAGTTGCAATCGATTGGACTGGCCGTTGGAATTCATGGAGCGAACATGG
TGAATACTGTCTTCATGCCAGCAGCAGGTGCAATTTTCGAGATTTTCCCG
TGGCGATATGTGCGATACTATTATGCGAGCGGAAGCAACTCTGGACTGAG
ATACAGTTTTCACGAACCGGAGCATGGGTTTCAGCGCAATTGTAGTTTCT
CTGAGACAACTTGTTTCATGAAGTATCGAGAATCTGTCATTTATCTCACG
GAAGCAGATCGAGAGGTGATTCACAAGCGACTTGAGAATGCTATCATGTA
CATTACTGACTTGCATCGAATGTTTCCGGAAGGTGTAATACCTTTGAGAA
AAGAAGGAAACTTGTATCAATTTGGATAA

Coding sequence (CDS) from alignment at NODE_199_length_38196_cov_4.525364:3719..5497+

>Gcaud9336.t1 ID=Gcaud9336.t1|Name=Gcaud9336.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1779bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:3719..5497+ (Gracilaria caudata M_176_S67 male)
ATGGCGGCGAAGCTTCGCTTCCGTACTCACTCGAAAGCGGGCAAGCTCTT
CCTGCCGCTCAAACGTCCGCCCAGACTCTCTCCCCGCCTTCTCTCCTATG
TCGCCCTTTTCTGTTTCCTCTCATGTCTGGCAGTCGCATTCCGTCAATTT
AACTACCTCTACCATTTGACGCACCCGGATGTCGTGCCGGGCAGCCCGCA
CTCCCGATCCCAATCACGCGCCTCGTCATTCACCCCTCATGGAGTGGCAA
GAATAGAAGAATCTGTTAACCTGTGGCGACATGAAGACCGCGATTGCCCG
CCAGAAGAAAACCCTCCTCCGCAGTCTTTGTATGCCACTGGGTCCGAGCG
ATGCTTTGCGTTGGGCCTACCAGATGCCGTCAATAGGACTTTGCAGAAAG
GTGACCCTGCTTCATTCTGGCAAATGAATAGTAGAGCACTGTGCTACTCC
GCGCGTCCAATCTGTTTGTATGGCAGAAGCATGAGGAACTTGTTATCGTT
TGAAGAGCGCGGAATGTCCAGGTGCCAAGTGCTTTCCGTAGAGCGCAATA
AGCTGTACGAAGCATCTCAAGTCGGGCTCAACGAGTCGTGCGCAGCCTTT
CGAAACCGTTTTGTTGCTAGCATGTATGGAAAGGAAGTGTTTTACTCGTA
TGAGCACTGGGAGGAGTACATCAAATCAAAGACATACAAGAATCCTAGAC
ACCATGCTGTGGGCTGGCACTCCGATTTTGCAATCATCGTTCCCAAATAC
AACTGGTCCTACAACATCTGTCACTACAATCGCATATGGAATTTCATCAT
GTATGTTATTCGAAATCTTCATCTTTTTGTTCCGGATGCCGATGAGATCC
AGCACATTGATGTTTTGTTCCGTTCCGGGTACAAGTACAATCAGCATTGG
CATGTTGGAATACGAGAAAGCACGCTGCCGTACCTGGAAAAACAGGTTGG
CAAGTCAATTAGCGTCTCGAAGATACGTTACGATTATTTACGTGACTATC
AGTGCATTCGAAGGGGCATTCTGCTCGGAAAAGAAGCTAGAATCGATGCC
TTTCCGTTTTTCAACGATACCGCAGTGTGGCGACCCGAAGAGCTTGTTAC
TGATACTCATTGGCCCGCAATTCCGCATGACTCGCTTTGGCTGCGCAACG
CTGTACTCACCGAGAACGGTTTAGGTTCTCTCGCGACCTCTGTGGTAGAC
GGAGTCGAACAGTTTGATCATATTCGCATACCACCACGGAGATTAGGTTT
TCTCGAGAGATCACCACGGTCAAAACGCCGACTCACACCAAGCGGCAAAA
TATGGTTGGAAAACACTTTGGAAGAGCTTTGTAAGAAGCACGGTATGGAG
TATAAGCATATTCGTACGAGCGGCGCTATGACGTTTAAGGAACAAGTGAG
CCAGTTGCAATCGATTGGACTGGCCGTTGGAATTCATGGAGCGAACATGG
TGAATACTGTCTTCATGCCAGCAGCAGGTGCAATTTTCGAGATTTTCCCG
TGGCGATATGTGCGATACTATTATGCGAGCGGAAGCAACTCTGGACTGAG
ATACAGTTTTCACGAACCGGAGCATGGGTTTCAGCGCAATTGTAGTTTCT
CTGAGACAACTTGTTTCATGAAGTATCGAGAATCTGTCATTTATCTCACG
GAAGCAGATCGAGAGGTGATTCACAAGCGACTTGAGAATGCTATCATGTA
CATTACTGACTTGCATCGAATGTTTCCGGAAGGTGTAATACCTTTGAGAA
AAGAAGGAAACTTGTATCAATTTGGATAA