Gcaud269.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud269.t1
Unique NameGcaud269.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1999_length_7251_cov_5.898184contigNODE_1999_length_7251_cov_5.898184:933..1847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud269Gcaud269Gracilaria caudata M_176_S67 malegeneNODE_1999_length_7251_cov_5.898184 933..1847 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud269.t1.stop1Gcaud269.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1999_length_7251_cov_5.898184 933..935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud269.t1.CDS1Gcaud269.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1999_length_7251_cov_5.898184 933..1847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud269.t1.exon1Gcaud269.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1999_length_7251_cov_5.898184 933..1847 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud269.t1.start1Gcaud269.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1999_length_7251_cov_5.898184 1845..1847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud269.t1Gcaud269.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1999_length_7251_cov_5.898184 933..1847 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud269.t1 ID=Gcaud269.t1|Name=Gcaud269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=305bp
MDRPYKPNQALLTIAVENIQRTTFHNKQKMGIVLGTVGSEVAAEGVTESI
SETVAETTAEGISETVSEAVTQSAAESAAEGAAEGATEGISESIAEGAGE
GAGESATEGAVETAVDKVAPKGASLIVRRVIKCVLLAAFVEEVTRITIKL
IGMKEEGNAIKGLLGYIQDAMKHAKENLKAWNSQINEAISQGKLQDTISL
PDGISLTEGEIFSSEINAKVTKFLQSLSGPYATLSALAKQKAPIDQLTKA
TKKVQSAFLQAAGVYLDTLQKWDEKESEVKNQAGVDFNVSQLQHDIQLVT
DNQV*
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spliced messenger RNA

>Gcaud269.t1 ID=Gcaud269.t1|Name=Gcaud269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=915bp|location=Sequence derived from alignment at NODE_1999_length_7251_cov_5.898184:933..1847- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGGCCGTACAAACCAAACCAAGCCCTGCTCACGATCGCAGTTGA
GAATATCCAACGTACAACGTTTCACAACAAGCAGAAAATGGGTATCGTCT
TGGGAACAGTCGGATCGGAAGTTGCTGCTGAAGGCGTCACTGAAAGCATT
TCTGAAACCGTAGCTGAAACGACAGCCGAAGGTATTTCCGAGACTGTCAG
TGAGGCCGTCACGCAATCAGCAGCCGAGAGCGCAGCAGAGGGCGCAGCAG
AGGGCGCCACAGAAGGCATCTCTGAATCAATTGCCGAAGGTGCAGGTGAA
GGAGCTGGCGAATCCGCGACGGAAGGAGCTGTGGAAACTGCAGTCGACAA
GGTTGCGCCGAAGGGCGCTAGTCTAATCGTTCGTCGTGTGATCAAATGTG
TTCTTCTGGCTGCTTTTGTGGAGGAAGTTACTCGCATCACCATAAAGCTT
ATCGGTATGAAGGAAGAAGGAAATGCGATTAAGGGGTTACTGGGTTACAT
CCAGGACGCAATGAAGCACGCGAAAGAGAATTTGAAGGCATGGAATTCAC
AGATTAACGAGGCCATAAGCCAAGGAAAACTGCAGGACACGATATCTCTT
CCAGATGGAATTTCGTTGACGGAAGGTGAGATATTTAGCAGTGAGATAAA
TGCCAAGGTAACTAAATTTCTCCAAAGTCTAAGTGGTCCGTACGCTACAT
TGAGTGCCCTGGCCAAACAGAAAGCGCCGATCGATCAATTGACAAAGGCA
ACCAAGAAGGTTCAGTCCGCCTTCCTTCAGGCTGCAGGCGTGTATTTGGA
CACTCTGCAAAAATGGGATGAGAAAGAGTCTGAGGTCAAAAACCAAGCGG
GAGTCGATTTCAATGTTTCGCAGTTGCAGCATGACATTCAGCTCGTCACG
GACAATCAGGTTTGA
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protein sequence of Gcaud269.t1

>Gcaud269.t1 ID=Gcaud269.t1|Name=Gcaud269.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=305bp
MDRPYKPNQALLTIAVENIQRTTFHNKQKMGIVLGTVGSEVAAEGVTESI
SETVAETTAEGISETVSEAVTQSAAESAAEGAAEGATEGISESIAEGAGE
GAGESATEGAVETAVDKVAPKGASLIVRRVIKCVLLAAFVEEVTRITIKL
IGMKEEGNAIKGLLGYIQDAMKHAKENLKAWNSQINEAISQGKLQDTISL
PDGISLTEGEIFSSEINAKVTKFLQSLSGPYATLSALAKQKAPIDQLTKA
TKKVQSAFLQAAGVYLDTLQKWDEKESEVKNQAGVDFNVSQLQHDIQLVT
DNQV*
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mRNA from alignment at NODE_1999_length_7251_cov_5.898184:933..1847-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud269.t1 ID=Gcaud269.t1|Name=Gcaud269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=915bp|location=Sequence derived from alignment at NODE_1999_length_7251_cov_5.898184:933..1847- (Gracilaria caudata M_176_S67 male)
ATGGACAGGCCGTACAAACCAAACCAAGCCCTGCTCACGATCGCAGTTGA
GAATATCCAACGTACAACGTTTCACAACAAGCAGAAAATGGGTATCGTCT
TGGGAACAGTCGGATCGGAAGTTGCTGCTGAAGGCGTCACTGAAAGCATT
TCTGAAACCGTAGCTGAAACGACAGCCGAAGGTATTTCCGAGACTGTCAG
TGAGGCCGTCACGCAATCAGCAGCCGAGAGCGCAGCAGAGGGCGCAGCAG
AGGGCGCCACAGAAGGCATCTCTGAATCAATTGCCGAAGGTGCAGGTGAA
GGAGCTGGCGAATCCGCGACGGAAGGAGCTGTGGAAACTGCAGTCGACAA
GGTTGCGCCGAAGGGCGCTAGTCTAATCGTTCGTCGTGTGATCAAATGTG
TTCTTCTGGCTGCTTTTGTGGAGGAAGTTACTCGCATCACCATAAAGCTT
ATCGGTATGAAGGAAGAAGGAAATGCGATTAAGGGGTTACTGGGTTACAT
CCAGGACGCAATGAAGCACGCGAAAGAGAATTTGAAGGCATGGAATTCAC
AGATTAACGAGGCCATAAGCCAAGGAAAACTGCAGGACACGATATCTCTT
CCAGATGGAATTTCGTTGACGGAAGGTGAGATATTTAGCAGTGAGATAAA
TGCCAAGGTAACTAAATTTCTCCAAAGTCTAAGTGGTCCGTACGCTACAT
TGAGTGCCCTGGCCAAACAGAAAGCGCCGATCGATCAATTGACAAAGGCA
ACCAAGAAGGTTCAGTCCGCCTTCCTTCAGGCTGCAGGCGTGTATTTGGA
CACTCTGCAAAAATGGGATGAGAAAGAGTCTGAGGTCAAAAACCAAGCGG
GAGTCGATTTCAATGTTTCGCAGTTGCAGCATGACATTCAGCTCGTCACG
GACAATCAGGTTTGA
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Coding sequence (CDS) from alignment at NODE_1999_length_7251_cov_5.898184:933..1847-

>Gcaud269.t1 ID=Gcaud269.t1|Name=Gcaud269.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=915bp|location=Sequence derived from alignment at NODE_1999_length_7251_cov_5.898184:933..1847- (Gracilaria caudata M_176_S67 male)
ATGGACAGGCCGTACAAACCAAACCAAGCCCTGCTCACGATCGCAGTTGA
GAATATCCAACGTACAACGTTTCACAACAAGCAGAAAATGGGTATCGTCT
TGGGAACAGTCGGATCGGAAGTTGCTGCTGAAGGCGTCACTGAAAGCATT
TCTGAAACCGTAGCTGAAACGACAGCCGAAGGTATTTCCGAGACTGTCAG
TGAGGCCGTCACGCAATCAGCAGCCGAGAGCGCAGCAGAGGGCGCAGCAG
AGGGCGCCACAGAAGGCATCTCTGAATCAATTGCCGAAGGTGCAGGTGAA
GGAGCTGGCGAATCCGCGACGGAAGGAGCTGTGGAAACTGCAGTCGACAA
GGTTGCGCCGAAGGGCGCTAGTCTAATCGTTCGTCGTGTGATCAAATGTG
TTCTTCTGGCTGCTTTTGTGGAGGAAGTTACTCGCATCACCATAAAGCTT
ATCGGTATGAAGGAAGAAGGAAATGCGATTAAGGGGTTACTGGGTTACAT
CCAGGACGCAATGAAGCACGCGAAAGAGAATTTGAAGGCATGGAATTCAC
AGATTAACGAGGCCATAAGCCAAGGAAAACTGCAGGACACGATATCTCTT
CCAGATGGAATTTCGTTGACGGAAGGTGAGATATTTAGCAGTGAGATAAA
TGCCAAGGTAACTAAATTTCTCCAAAGTCTAAGTGGTCCGTACGCTACAT
TGAGTGCCCTGGCCAAACAGAAAGCGCCGATCGATCAATTGACAAAGGCA
ACCAAGAAGGTTCAGTCCGCCTTCCTTCAGGCTGCAGGCGTGTATTTGGA
CACTCTGCAAAAATGGGATGAGAAAGAGTCTGAGGTCAAAAACCAAGCGG
GAGTCGATTTCAATGTTTCGCAGTTGCAGCATGACATTCAGCTCGTCACG
GACAATCAGGTTTGA
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