Gcaud1534.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1534.t1
Unique NameGcaud1534.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length181
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1995_length_7284_cov_5.097873contigNODE_1995_length_7284_cov_5.097873:4498..5040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1534Gcaud1534Gracilaria caudata M_176_S67 malegeneNODE_1995_length_7284_cov_5.097873 4498..5040 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1534.t1.stop1Gcaud1534.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1995_length_7284_cov_5.097873 4498..4500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1534.t1.CDS1Gcaud1534.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1995_length_7284_cov_5.097873 4498..5040 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1534.t1.exon1Gcaud1534.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1995_length_7284_cov_5.097873 4498..5040 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1534.t1.start1Gcaud1534.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1995_length_7284_cov_5.097873 5038..5040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1534.t1Gcaud1534.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1995_length_7284_cov_5.097873 4498..5040 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1534.t1 ID=Gcaud1534.t1|Name=Gcaud1534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=181bp
MRTPASAEEVSRNLHLLDGSVKKKNNRLQKFVSEQTPLIETADDAKAELT
SKLDSHPVMRAYDMIEVIFDTAAVISVAVPIVISVVSSVTMFFQDKPNEA
TALDATGVAAGLGAPTVTVLVRRQVLKYVRSAVKDVVRQEANRLREDAVD
DMKEDAVDYLQDQLDDYLPFLADAHTSGEQ*
back to top

spliced messenger RNA

>Gcaud1534.t1 ID=Gcaud1534.t1|Name=Gcaud1534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=543bp|location=Sequence derived from alignment at NODE_1995_length_7284_cov_5.097873:4498..5040- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCACGCCCGCGAGTGCGGAGGAAGTGAGTCGCAATTTGCATCTGCT
GGATGGTTCCGTCAAGAAGAAGAACAACCGTCTGCAGAAGTTTGTGTCGG
AACAGACTCCATTGATCGAAACGGCGGACGACGCAAAGGCCGAGCTCACG
TCGAAGCTTGATTCGCATCCCGTCATGCGCGCTTACGATATGATAGAAGT
GATTTTCGACACCGCCGCCGTCATCAGCGTGGCGGTGCCCATTGTCATCT
CCGTTGTGAGCTCCGTCACCATGTTCTTTCAAGACAAGCCGAACGAAGCG
ACAGCTCTGGACGCAACTGGCGTGGCTGCGGGCCTGGGCGCACCTACAGT
TACTGTCTTGGTACGCAGACAGGTGCTCAAATACGTGCGATCGGCAGTTA
AAGACGTCGTTAGGCAGGAAGCGAATCGCCTACGCGAAGATGCTGTGGAC
GATATGAAGGAGGATGCTGTCGACTATCTGCAGGATCAGCTGGATGACTA
CTTGCCCTTTCTGGCCGACGCTCACACTTCTGGAGAGCAGTAG
back to top

protein sequence of Gcaud1534.t1

>Gcaud1534.t1 ID=Gcaud1534.t1|Name=Gcaud1534.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=181bp
MRTPASAEEVSRNLHLLDGSVKKKNNRLQKFVSEQTPLIETADDAKAELT
SKLDSHPVMRAYDMIEVIFDTAAVISVAVPIVISVVSSVTMFFQDKPNEA
TALDATGVAAGLGAPTVTVLVRRQVLKYVRSAVKDVVRQEANRLREDAVD
DMKEDAVDYLQDQLDDYLPFLADAHTSGEQ*
back to top

mRNA from alignment at NODE_1995_length_7284_cov_5.097873:4498..5040-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1534.t1 ID=Gcaud1534.t1|Name=Gcaud1534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=543bp|location=Sequence derived from alignment at NODE_1995_length_7284_cov_5.097873:4498..5040- (Gracilaria caudata M_176_S67 male)
ATGCGCACGCCCGCGAGTGCGGAGGAAGTGAGTCGCAATTTGCATCTGCT
GGATGGTTCCGTCAAGAAGAAGAACAACCGTCTGCAGAAGTTTGTGTCGG
AACAGACTCCATTGATCGAAACGGCGGACGACGCAAAGGCCGAGCTCACG
TCGAAGCTTGATTCGCATCCCGTCATGCGCGCTTACGATATGATAGAAGT
GATTTTCGACACCGCCGCCGTCATCAGCGTGGCGGTGCCCATTGTCATCT
CCGTTGTGAGCTCCGTCACCATGTTCTTTCAAGACAAGCCGAACGAAGCG
ACAGCTCTGGACGCAACTGGCGTGGCTGCGGGCCTGGGCGCACCTACAGT
TACTGTCTTGGTACGCAGACAGGTGCTCAAATACGTGCGATCGGCAGTTA
AAGACGTCGTTAGGCAGGAAGCGAATCGCCTACGCGAAGATGCTGTGGAC
GATATGAAGGAGGATGCTGTCGACTATCTGCAGGATCAGCTGGATGACTA
CTTGCCCTTTCTGGCCGACGCTCACACTTCTGGAGAGCAGTAG
back to top

Coding sequence (CDS) from alignment at NODE_1995_length_7284_cov_5.097873:4498..5040-

>Gcaud1534.t1 ID=Gcaud1534.t1|Name=Gcaud1534.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=543bp|location=Sequence derived from alignment at NODE_1995_length_7284_cov_5.097873:4498..5040- (Gracilaria caudata M_176_S67 male)
ATGCGCACGCCCGCGAGTGCGGAGGAAGTGAGTCGCAATTTGCATCTGCT
GGATGGTTCCGTCAAGAAGAAGAACAACCGTCTGCAGAAGTTTGTGTCGG
AACAGACTCCATTGATCGAAACGGCGGACGACGCAAAGGCCGAGCTCACG
TCGAAGCTTGATTCGCATCCCGTCATGCGCGCTTACGATATGATAGAAGT
GATTTTCGACACCGCCGCCGTCATCAGCGTGGCGGTGCCCATTGTCATCT
CCGTTGTGAGCTCCGTCACCATGTTCTTTCAAGACAAGCCGAACGAAGCG
ACAGCTCTGGACGCAACTGGCGTGGCTGCGGGCCTGGGCGCACCTACAGT
TACTGTCTTGGTACGCAGACAGGTGCTCAAATACGTGCGATCGGCAGTTA
AAGACGTCGTTAGGCAGGAAGCGAATCGCCTACGCGAAGATGCTGTGGAC
GATATGAAGGAGGATGCTGTCGACTATCTGCAGGATCAGCTGGATGACTA
CTTGCCCTTTCTGGCCGACGCTCACACTTCTGGAGAGCAGTAG
back to top