Gcaud1227.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1227.t1
Unique NameGcaud1227.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length235
Homology
The following BLAST results are available for this feature:
BLAST of Gcaud1227.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 2..18
score: 26.47
coord: 122..137
score: 51.56
coord: 147..157
score: 39.77
coord: 187..205
score: 44.08
coord: 42..53
score: 36.46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1993_length_7292_cov_4.533259contigNODE_1993_length_7292_cov_4.533259:1805..2509 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1227.t1Gcaud1227.t1Gracilaria caudata M_176_S67 malemRNANODE_1993_length_7292_cov_4.533259 1805..2509 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1227.t1 ID=Gcaud1227.t1|Name=Gcaud1227.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MKHVLAFSLFLAVGNAALIPTTRQAGKGGNGGAGTAIGDGNSGGIGGDGG
NGGIGLIGGGDGGDGGNGVISGDFAFGGFGGKGGDGGDVIIIGEGGDGGK
GGGGALYGDFGYGGIGGKGGKGGNGGFFGGDGGDGGDGGLGLLQGIFGVG
GFGGDGGKGGGSFFGSGGDGGFGGLGALYGDFGYGAFGGKGGKGGDGLFA
GDGGDGGTAILVGNFGSGAAGGKGGDGGDQLPPV*
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