Gcaud1227.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1227.t1
Unique NameGcaud1227.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1993_length_7292_cov_4.533259contigNODE_1993_length_7292_cov_4.533259:1805..2509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1227Gcaud1227Gracilaria caudata M_176_S67 malegeneNODE_1993_length_7292_cov_4.533259 1805..2509 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1227.t1.start1Gcaud1227.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1993_length_7292_cov_4.533259 1805..1807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1227.t1.CDS1Gcaud1227.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1993_length_7292_cov_4.533259 1805..2509 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1227.t1.exon1Gcaud1227.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1993_length_7292_cov_4.533259 1805..2509 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1227.t1.stop1Gcaud1227.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1993_length_7292_cov_4.533259 2507..2509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1227.t1Gcaud1227.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1993_length_7292_cov_4.533259 1805..2509 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1227.t1 ID=Gcaud1227.t1|Name=Gcaud1227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=235bp
MKHVLAFSLFLAVGNAALIPTTRQAGKGGNGGAGTAIGDGNSGGIGGDGG
NGGIGLIGGGDGGDGGNGVISGDFAFGGFGGKGGDGGDVIIIGEGGDGGK
GGGGALYGDFGYGGIGGKGGKGGNGGFFGGDGGDGGDGGLGLLQGIFGVG
GFGGDGGKGGGSFFGSGGDGGFGGLGALYGDFGYGAFGGKGGKGGDGLFA
GDGGDGGTAILVGNFGSGAAGGKGGDGGDQLPPV*
back to top

spliced messenger RNA

>Gcaud1227.t1 ID=Gcaud1227.t1|Name=Gcaud1227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_1993_length_7292_cov_4.533259:1805..2509+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCACGTGCTCGCCTTTTCGCTGTTCCTTGCAGTTGGTAATGCCGC
ACTCATTCCAACTACTCGCCAGGCCGGTAAGGGTGGCAATGGCGGCGCAG
GCACCGCCATCGGCGATGGAAACAGCGGTGGAATCGGTGGAGACGGGGGA
AATGGTGGCATAGGACTGATTGGTGGTGGAGATGGAGGAGATGGAGGTAA
CGGAGTTATCAGTGGAGATTTTGCGTTTGGAGGATTTGGAGGTAAGGGTG
GAGATGGTGGAGACGTCATCATCATCGGGGAAGGTGGAGACGGCGGGAAA
GGGGGTGGCGGTGCTCTCTACGGTGACTTCGGATACGGAGGTATTGGAGG
GAAAGGAGGCAAGGGTGGCAATGGTGGCTTCTTTGGAGGCGATGGCGGGG
ATGGTGGTGATGGTGGCCTTGGCCTGCTGCAAGGTATATTTGGAGTTGGT
GGGTTTGGTGGGGATGGTGGAAAGGGAGGAGGTTCTTTCTTTGGCAGTGG
GGGTGATGGTGGGTTTGGTGGGCTGGGAGCACTTTATGGAGATTTCGGCT
ATGGTGCGTTCGGTGGAAAGGGAGGCAAGGGTGGTGATGGTCTGTTTGCT
GGTGATGGTGGAGATGGAGGGACTGCAATCCTTGTCGGGAACTTTGGTAG
CGGAGCTGCTGGTGGGAAGGGAGGTGATGGTGGCGACCAGCTCCCTCCTG
TCTAG
back to top

protein sequence of Gcaud1227.t1

>Gcaud1227.t1 ID=Gcaud1227.t1|Name=Gcaud1227.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MKHVLAFSLFLAVGNAALIPTTRQAGKGGNGGAGTAIGDGNSGGIGGDGG
NGGIGLIGGGDGGDGGNGVISGDFAFGGFGGKGGDGGDVIIIGEGGDGGK
GGGGALYGDFGYGGIGGKGGKGGNGGFFGGDGGDGGDGGLGLLQGIFGVG
GFGGDGGKGGGSFFGSGGDGGFGGLGALYGDFGYGAFGGKGGKGGDGLFA
GDGGDGGTAILVGNFGSGAAGGKGGDGGDQLPPV*
back to top

mRNA from alignment at NODE_1993_length_7292_cov_4.533259:1805..2509+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1227.t1 ID=Gcaud1227.t1|Name=Gcaud1227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_1993_length_7292_cov_4.533259:1805..2509+ (Gracilaria caudata M_176_S67 male)
ATGAAGCACGTGCTCGCCTTTTCGCTGTTCCTTGCAGTTGGTAATGCCGC
ACTCATTCCAACTACTCGCCAGGCCGGTAAGGGTGGCAATGGCGGCGCAG
GCACCGCCATCGGCGATGGAAACAGCGGTGGAATCGGTGGAGACGGGGGA
AATGGTGGCATAGGACTGATTGGTGGTGGAGATGGAGGAGATGGAGGTAA
CGGAGTTATCAGTGGAGATTTTGCGTTTGGAGGATTTGGAGGTAAGGGTG
GAGATGGTGGAGACGTCATCATCATCGGGGAAGGTGGAGACGGCGGGAAA
GGGGGTGGCGGTGCTCTCTACGGTGACTTCGGATACGGAGGTATTGGAGG
GAAAGGAGGCAAGGGTGGCAATGGTGGCTTCTTTGGAGGCGATGGCGGGG
ATGGTGGTGATGGTGGCCTTGGCCTGCTGCAAGGTATATTTGGAGTTGGT
GGGTTTGGTGGGGATGGTGGAAAGGGAGGAGGTTCTTTCTTTGGCAGTGG
GGGTGATGGTGGGTTTGGTGGGCTGGGAGCACTTTATGGAGATTTCGGCT
ATGGTGCGTTCGGTGGAAAGGGAGGCAAGGGTGGTGATGGTCTGTTTGCT
GGTGATGGTGGAGATGGAGGGACTGCAATCCTTGTCGGGAACTTTGGTAG
CGGAGCTGCTGGTGGGAAGGGAGGTGATGGTGGCGACCAGCTCCCTCCTG
TCTAG
back to top

Coding sequence (CDS) from alignment at NODE_1993_length_7292_cov_4.533259:1805..2509+

>Gcaud1227.t1 ID=Gcaud1227.t1|Name=Gcaud1227.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=705bp|location=Sequence derived from alignment at NODE_1993_length_7292_cov_4.533259:1805..2509+ (Gracilaria caudata M_176_S67 male)
ATGAAGCACGTGCTCGCCTTTTCGCTGTTCCTTGCAGTTGGTAATGCCGC
ACTCATTCCAACTACTCGCCAGGCCGGTAAGGGTGGCAATGGCGGCGCAG
GCACCGCCATCGGCGATGGAAACAGCGGTGGAATCGGTGGAGACGGGGGA
AATGGTGGCATAGGACTGATTGGTGGTGGAGATGGAGGAGATGGAGGTAA
CGGAGTTATCAGTGGAGATTTTGCGTTTGGAGGATTTGGAGGTAAGGGTG
GAGATGGTGGAGACGTCATCATCATCGGGGAAGGTGGAGACGGCGGGAAA
GGGGGTGGCGGTGCTCTCTACGGTGACTTCGGATACGGAGGTATTGGAGG
GAAAGGAGGCAAGGGTGGCAATGGTGGCTTCTTTGGAGGCGATGGCGGGG
ATGGTGGTGATGGTGGCCTTGGCCTGCTGCAAGGTATATTTGGAGTTGGT
GGGTTTGGTGGGGATGGTGGAAAGGGAGGAGGTTCTTTCTTTGGCAGTGG
GGGTGATGGTGGGTTTGGTGGGCTGGGAGCACTTTATGGAGATTTCGGCT
ATGGTGCGTTCGGTGGAAAGGGAGGCAAGGGTGGTGATGGTCTGTTTGCT
GGTGATGGTGGAGATGGAGGGACTGCAATCCTTGTCGGGAACTTTGGTAG
CGGAGCTGCTGGTGGGAAGGGAGGTGATGGTGGCGACCAGCTCCCTCCTG
TCTAG
back to top