Gcaud1935.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1935.t2
Unique Name	Gcaud1935.t2
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	471

Homology

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BLAST of Gcaud1935.t2 vs. uniprot
Match: A0A2V3IPX5_9FLOR (CHD3-type chromatin-remodeling factor PICKLE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX5_9FLOR)

HSP 1 Score: 318 bits (814), Expect = 3.170e-97
Identity = 170/363 (46.83%), Postives = 220/363 (60.61%), Query Frame = 0

Query:   19 QPVRTIPGHANLP-------------PLSHEGLINVRMPKPADDEDWDRFVFFKHRPRRHDFGKNCYLSDYSPFAALAPAVADEPPSTICA---------------------CMAPYPVTTSPWYCKGCRSAGLPDGQPIRIPDPPSNLSLAAQALHRPIIDAREGNPMDLVLHPSLMAMFREHYGGRDWLQCYTCKRRRIVPSGLLSESVKIPFVCSGMFWVPESERNCTSHMDAETQRIEKYINQQAALRGERRKALLE-SFGNGSDDESESSLRNDPSNVKLSARSSTHHPGQPKKPLSNHTAIPNGTSVQDPVPKTVPSVQANTESLIERTKAVSIGQPSPEIAQANG-FTPMEVDTMV 345
            QPV+  P H + P             PL+H+ LIN+  PK  D  DWDR VFFKHRP+R+DFG + Y+SD+SPF+A+   V    PS++CA                     C++PYPVTT+PW+CKGCRSAG+PD +   IPDPP+NL+ AAQ LHRPI+DA+EGNPMDL LHP L+ MFR+ YGG DWLQC  CKRRR+V  G+LSESV +PF C   FW+P+S+R+C S MD  TQR EK+IN+QAALR  RRKAL E  FG+GSDDE ++ ++  P NVKLSA+       +    + N       T   +P+P  +     N             G  +P I   +  F  MEVD++V
Sbjct:  316 QPVQPSPVHGSSPDHAVQSTRSPQVAPLTHDHLINIWAPKVMDGSDWDRLVFFKHRPQRYDFGDSAYISDFSPFSAVVAEVGGSSPSSVCAVCGGAYNLTPCNGCVCAFHAKCVSPYPVTTAPWFCKGCRSAGVPDNKVPPIPDPPTNLTGAAQPLHRPIVDAQEGNPMDLTLHPGLLKMFRDQYGGHDWLQCSICKRRRLVMKGVLSESVDLPFNCENAFWLPQSDRHCQSQMDPATQRAEKFINEQAALRPVRRKALFEYGFGDGSDDE-DTIIKRSPKNVKLSAKPLCTRSNKEDTHVPNGVPASTHTRPSEPIPDPMQISDNN-------------GAENPRIVNTSRTFDEMEVDSIV 664

The following BLAST results are available for this feature:

BLAST of Gcaud1935.t2 vs. uniprot

BLAST of Gcaud1935.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IPX5_9FLOR	3.170e-97	46.83	CHD3-type chromatin-remodeling factor PICKLE n=1 T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 218..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:34928..36403 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1935.t2	Gcaud1935.t2	Gracilaria caudata M_176_S67 male	mRNA	NODE_105_length_50300_cov_4.471768 34928..36403 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1935.t2 ID=Gcaud1935.t2|Name=Gcaud1935.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=471bp
MQTPTPTAVPPGGSAQTPQPVRTIPGHANLPPLSHEGLINVRMPKPADDE
DWDRFVFFKHRPRRHDFGKNCYLSDYSPFAALAPAVADEPPSTICACMAP
YPVTTSPWYCKGCRSAGLPDGQPIRIPDPPSNLSLAAQALHRPIIDAREG
NPMDLVLHPSLMAMFREHYGGRDWLQCYTCKRRRIVPSGLLSESVKIPFV
CSGMFWVPESERNCTSHMDAETQRIEKYINQQAALRGERRKALLESFGNG
SDDESESSLRNDPSNVKLSARSSTHHPGQPKKPLSNHTAIPNGTSVQDPV
PKTVPSVQANTESLIERTKAVSIGQPSPEIAQANGFTPMEVDTMVAAQPV
HSNTNRTQPGDDMTGTTPQQSTATQAQRPVLGPGTATETKKEDTKQEDSV
SAPSMKPEDVQQELLVFIAELELDEPTEDLLTDLALTNNKTLAQIYIAFR
SNKERFKRQAIRFAKRTAKP*