Gcaud7738.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7738.t1
Unique Name	Gcaud7738.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	536

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1982_length_7356_cov_6.654370	contig	NODE_1982_length_7356_cov_6.654370:2208..3815 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7738	Gcaud7738	Gracilaria caudata M_176_S67 male	gene	NODE_1982_length_7356_cov_6.654370 2208..3815 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7738.t1.stop1	Gcaud7738.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1982_length_7356_cov_6.654370 2208..2210 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7738.t1.CDS1	Gcaud7738.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1982_length_7356_cov_6.654370 2208..3815 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7738.t1.exon1	Gcaud7738.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1982_length_7356_cov_6.654370 2208..3815 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7738.t1.start1	Gcaud7738.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1982_length_7356_cov_6.654370 3813..3815 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7738.t1	Gcaud7738.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1982_length_7356_cov_6.654370 2208..3815 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1982_length_7356_cov_6.654370:2208..3815-
coding sequence from alignment at NODE_1982_length_7356_cov_6.654370:2208..3815-

mRNA sequence

>Gcaud7738.t1 ID=Gcaud7738.t1|Name=Gcaud7738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=536bp
MAWNTNLELNLFNALKALTVFLLFKPLTTYLTLRISTSLFAAVLHRHRAA
KLNSLSLCSALFDGFIISSVPGRRSLSRSLLTAFLLVLTVWAGTGAEVLF
EYGISSFGQSVTQVVTVRNTFSGDESITYTEGRNDMMAQIGLLERACPEQ
NTLSTFTDVYVDPLSPNITYCSPNVLQRSLCASGRTLLGAPCVPPMFPNA
ASSTPQSKNWTSETWVSLIFSAELWTIESDQTEEDNGFVTFEPDRAQYHA
SATQLFDLNNDDEEVYDVSGLLRVHCGSGSTLSDEHKPGDIPFQVCVWEF
ERDVLVTHADWLNGEVKEGRTFFGGVSRMGEGVRGILDNVTKLEVTARGR
WISISKSVTRSDENRNGNNGEIVQRQGLNARDVMLTLGLARPLMKFSSED
KASSFLADTFELGLWSSASMALRVMERAISRGISILNDGDVIDAEVVTDT
RQIATVDLRFLAQYLGTVAALAGVALIFLVLSRTAPRLGLGVEDVLGLWA
LDRAGKKLSKKKAKANTVQLDNSENGDSVRVLFEK*

spliced messenger RNA

>Gcaud7738.t1 ID=Gcaud7738.t1|Name=Gcaud7738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at NODE_1982_length_7356_cov_6.654370:2208..3815- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGAACACCAATCTCGAGCTCAACCTCTTCAACGCCCTCAAGGC
CCTGACCGTCTTCCTCCTCTTCAAGCCCCTCACCACCTACCTCACGCTCC
GCATCTCTACGTCGCTCTTCGCAGCCGTTCTGCACCGCCACCGCGCCGCC
AAGCTGAACAGTCTCAGTCTGTGCTCCGCGCTCTTCGATGGCTTCATCAT
CTCCTCTGTTCCCGGCCGCAGATCGCTCTCCCGCTCACTGCTCACAGCCT
TCCTGCTCGTGCTCACCGTGTGGGCGGGCACCGGCGCGGAAGTGCTGTTT
GAGTACGGCATTTCCTCCTTTGGACAAAGTGTCACTCAAGTCGTCACCGT
GAGAAACACCTTTTCTGGCGATGAGTCTATCACGTATACGGAGGGAAGAA
ACGATATGATGGCCCAAATCGGGTTACTTGAACGCGCATGCCCCGAGCAA
AATACTCTCTCCACCTTCACTGACGTGTACGTTGATCCCTTGTCTCCGAA
CATAACGTACTGCAGTCCAAACGTCTTGCAGCGCTCGCTTTGTGCCTCTG
GGCGCACCTTATTGGGAGCGCCGTGTGTTCCTCCCATGTTTCCGAACGCC
GCGAGCTCCACTCCACAGTCCAAAAACTGGACTTCTGAGACATGGGTGTC
TCTCATATTCTCCGCTGAATTGTGGACTATCGAGTCGGACCAAACCGAGG
AGGACAATGGATTCGTCACTTTTGAACCGGACCGCGCCCAGTATCATGCC
AGCGCGACGCAACTGTTTGACTTGAATAATGATGACGAGGAGGTATATGA
CGTGTCTGGGCTGCTTCGCGTTCATTGCGGATCTGGTTCCACGCTTTCGG
ACGAGCACAAACCGGGTGATATTCCCTTCCAAGTCTGTGTTTGGGAGTTT
GAACGCGATGTCCTCGTCACTCATGCCGATTGGCTCAATGGAGAAGTGAA
AGAGGGGCGCACATTTTTCGGTGGCGTCAGTAGAATGGGAGAAGGTGTGA
GGGGCATCTTGGATAACGTGACAAAGCTTGAAGTCACGGCACGCGGTCGA
TGGATTTCAATCTCCAAGTCTGTCACTCGTTCTGATGAGAATCGGAACGG
AAACAACGGCGAAATCGTTCAGCGGCAGGGGTTGAACGCGCGAGATGTGA
TGCTGACGCTTGGTCTAGCGCGCCCACTTATGAAGTTTTCCTCCGAAGAT
AAAGCCTCCTCTTTCCTTGCGGACACCTTTGAGCTAGGATTGTGGTCATC
TGCTTCCATGGCACTACGAGTCATGGAACGTGCAATCTCTCGTGGCATAT
CAATTCTGAATGATGGAGATGTGATTGACGCAGAGGTTGTGACGGATACT
CGACAGATTGCAACTGTTGACTTACGATTTCTTGCCCAGTATCTTGGAAC
AGTCGCGGCGCTTGCAGGCGTAGCTTTGATATTTTTAGTTTTGAGTAGAA
CAGCCCCGCGGCTAGGCCTTGGGGTTGAAGACGTTCTGGGTTTGTGGGCA
TTGGACAGGGCTGGAAAGAAGCTCAGTAAGAAGAAAGCGAAAGCTAACAC
GGTTCAGTTAGACAACTCAGAAAATGGAGACAGTGTTCGTGTGCTTTTTG
AGAAATAG

protein sequence of Gcaud7738.t1

>Gcaud7738.t1 ID=Gcaud7738.t1|Name=Gcaud7738.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=536bp
MAWNTNLELNLFNALKALTVFLLFKPLTTYLTLRISTSLFAAVLHRHRAA
KLNSLSLCSALFDGFIISSVPGRRSLSRSLLTAFLLVLTVWAGTGAEVLF
EYGISSFGQSVTQVVTVRNTFSGDESITYTEGRNDMMAQIGLLERACPEQ
NTLSTFTDVYVDPLSPNITYCSPNVLQRSLCASGRTLLGAPCVPPMFPNA
ASSTPQSKNWTSETWVSLIFSAELWTIESDQTEEDNGFVTFEPDRAQYHA
SATQLFDLNNDDEEVYDVSGLLRVHCGSGSTLSDEHKPGDIPFQVCVWEF
ERDVLVTHADWLNGEVKEGRTFFGGVSRMGEGVRGILDNVTKLEVTARGR
WISISKSVTRSDENRNGNNGEIVQRQGLNARDVMLTLGLARPLMKFSSED
KASSFLADTFELGLWSSASMALRVMERAISRGISILNDGDVIDAEVVTDT
RQIATVDLRFLAQYLGTVAALAGVALIFLVLSRTAPRLGLGVEDVLGLWA
LDRAGKKLSKKKAKANTVQLDNSENGDSVRVLFEK*

mRNA from alignment at NODE_1982_length_7356_cov_6.654370:2208..3815-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7738.t1 ID=Gcaud7738.t1|Name=Gcaud7738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at NODE_1982_length_7356_cov_6.654370:2208..3815- (Gracilaria caudata M_176_S67 male)
ATGGCGTGGAACACCAATCTCGAGCTCAACCTCTTCAACGCCCTCAAGGC
CCTGACCGTCTTCCTCCTCTTCAAGCCCCTCACCACCTACCTCACGCTCC
GCATCTCTACGTCGCTCTTCGCAGCCGTTCTGCACCGCCACCGCGCCGCC
AAGCTGAACAGTCTCAGTCTGTGCTCCGCGCTCTTCGATGGCTTCATCAT
CTCCTCTGTTCCCGGCCGCAGATCGCTCTCCCGCTCACTGCTCACAGCCT
TCCTGCTCGTGCTCACCGTGTGGGCGGGCACCGGCGCGGAAGTGCTGTTT
GAGTACGGCATTTCCTCCTTTGGACAAAGTGTCACTCAAGTCGTCACCGT
GAGAAACACCTTTTCTGGCGATGAGTCTATCACGTATACGGAGGGAAGAA
ACGATATGATGGCCCAAATCGGGTTACTTGAACGCGCATGCCCCGAGCAA
AATACTCTCTCCACCTTCACTGACGTGTACGTTGATCCCTTGTCTCCGAA
CATAACGTACTGCAGTCCAAACGTCTTGCAGCGCTCGCTTTGTGCCTCTG
GGCGCACCTTATTGGGAGCGCCGTGTGTTCCTCCCATGTTTCCGAACGCC
GCGAGCTCCACTCCACAGTCCAAAAACTGGACTTCTGAGACATGGGTGTC
TCTCATATTCTCCGCTGAATTGTGGACTATCGAGTCGGACCAAACCGAGG
AGGACAATGGATTCGTCACTTTTGAACCGGACCGCGCCCAGTATCATGCC
AGCGCGACGCAACTGTTTGACTTGAATAATGATGACGAGGAGGTATATGA
CGTGTCTGGGCTGCTTCGCGTTCATTGCGGATCTGGTTCCACGCTTTCGG
ACGAGCACAAACCGGGTGATATTCCCTTCCAAGTCTGTGTTTGGGAGTTT
GAACGCGATGTCCTCGTCACTCATGCCGATTGGCTCAATGGAGAAGTGAA
AGAGGGGCGCACATTTTTCGGTGGCGTCAGTAGAATGGGAGAAGGTGTGA
GGGGCATCTTGGATAACGTGACAAAGCTTGAAGTCACGGCACGCGGTCGA
TGGATTTCAATCTCCAAGTCTGTCACTCGTTCTGATGAGAATCGGAACGG
AAACAACGGCGAAATCGTTCAGCGGCAGGGGTTGAACGCGCGAGATGTGA
TGCTGACGCTTGGTCTAGCGCGCCCACTTATGAAGTTTTCCTCCGAAGAT
AAAGCCTCCTCTTTCCTTGCGGACACCTTTGAGCTAGGATTGTGGTCATC
TGCTTCCATGGCACTACGAGTCATGGAACGTGCAATCTCTCGTGGCATAT
CAATTCTGAATGATGGAGATGTGATTGACGCAGAGGTTGTGACGGATACT
CGACAGATTGCAACTGTTGACTTACGATTTCTTGCCCAGTATCTTGGAAC
AGTCGCGGCGCTTGCAGGCGTAGCTTTGATATTTTTAGTTTTGAGTAGAA
CAGCCCCGCGGCTAGGCCTTGGGGTTGAAGACGTTCTGGGTTTGTGGGCA
TTGGACAGGGCTGGAAAGAAGCTCAGTAAGAAGAAAGCGAAAGCTAACAC
GGTTCAGTTAGACAACTCAGAAAATGGAGACAGTGTTCGTGTGCTTTTTG
AGAAATAG

Coding sequence (CDS) from alignment at NODE_1982_length_7356_cov_6.654370:2208..3815-

>Gcaud7738.t1 ID=Gcaud7738.t1|Name=Gcaud7738.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1608bp|location=Sequence derived from alignment at NODE_1982_length_7356_cov_6.654370:2208..3815- (Gracilaria caudata M_176_S67 male)
ATGGCGTGGAACACCAATCTCGAGCTCAACCTCTTCAACGCCCTCAAGGC
CCTGACCGTCTTCCTCCTCTTCAAGCCCCTCACCACCTACCTCACGCTCC
GCATCTCTACGTCGCTCTTCGCAGCCGTTCTGCACCGCCACCGCGCCGCC
AAGCTGAACAGTCTCAGTCTGTGCTCCGCGCTCTTCGATGGCTTCATCAT
CTCCTCTGTTCCCGGCCGCAGATCGCTCTCCCGCTCACTGCTCACAGCCT
TCCTGCTCGTGCTCACCGTGTGGGCGGGCACCGGCGCGGAAGTGCTGTTT
GAGTACGGCATTTCCTCCTTTGGACAAAGTGTCACTCAAGTCGTCACCGT
GAGAAACACCTTTTCTGGCGATGAGTCTATCACGTATACGGAGGGAAGAA
ACGATATGATGGCCCAAATCGGGTTACTTGAACGCGCATGCCCCGAGCAA
AATACTCTCTCCACCTTCACTGACGTGTACGTTGATCCCTTGTCTCCGAA
CATAACGTACTGCAGTCCAAACGTCTTGCAGCGCTCGCTTTGTGCCTCTG
GGCGCACCTTATTGGGAGCGCCGTGTGTTCCTCCCATGTTTCCGAACGCC
GCGAGCTCCACTCCACAGTCCAAAAACTGGACTTCTGAGACATGGGTGTC
TCTCATATTCTCCGCTGAATTGTGGACTATCGAGTCGGACCAAACCGAGG
AGGACAATGGATTCGTCACTTTTGAACCGGACCGCGCCCAGTATCATGCC
AGCGCGACGCAACTGTTTGACTTGAATAATGATGACGAGGAGGTATATGA
CGTGTCTGGGCTGCTTCGCGTTCATTGCGGATCTGGTTCCACGCTTTCGG
ACGAGCACAAACCGGGTGATATTCCCTTCCAAGTCTGTGTTTGGGAGTTT
GAACGCGATGTCCTCGTCACTCATGCCGATTGGCTCAATGGAGAAGTGAA
AGAGGGGCGCACATTTTTCGGTGGCGTCAGTAGAATGGGAGAAGGTGTGA
GGGGCATCTTGGATAACGTGACAAAGCTTGAAGTCACGGCACGCGGTCGA
TGGATTTCAATCTCCAAGTCTGTCACTCGTTCTGATGAGAATCGGAACGG
AAACAACGGCGAAATCGTTCAGCGGCAGGGGTTGAACGCGCGAGATGTGA
TGCTGACGCTTGGTCTAGCGCGCCCACTTATGAAGTTTTCCTCCGAAGAT
AAAGCCTCCTCTTTCCTTGCGGACACCTTTGAGCTAGGATTGTGGTCATC
TGCTTCCATGGCACTACGAGTCATGGAACGTGCAATCTCTCGTGGCATAT
CAATTCTGAATGATGGAGATGTGATTGACGCAGAGGTTGTGACGGATACT
CGACAGATTGCAACTGTTGACTTACGATTTCTTGCCCAGTATCTTGGAAC
AGTCGCGGCGCTTGCAGGCGTAGCTTTGATATTTTTAGTTTTGAGTAGAA
CAGCCCCGCGGCTAGGCCTTGGGGTTGAAGACGTTCTGGGTTTGTGGGCA
TTGGACAGGGCTGGAAAGAAGCTCAGTAAGAAGAAAGCGAAAGCTAACAC
GGTTCAGTTAGACAACTCAGAAAATGGAGACAGTGTTCGTGTGCTTTTTG
AGAAATAG