Gcaud7738.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7738.t1
Unique Name	Gcaud7738.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	536

Homology

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BLAST of Gcaud7738.t1 vs. uniprot
Match: A0A2V3IZM0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZM0_9FLOR)

HSP 1 Score: 686 bits (1771), Expect = 6.420e-244
Identity = 357/483 (73.91%), Postives = 401/483 (83.02%), Query Frame = 0

Query:    1 MAWNTNLELNLFNALKALTVFLLFKPLTTYLTLRISTSLFAAVLHRHRAAKLNSLSLCSALFDGFIISSVPGRRSLSRSLLTAFLLVLTVWAGTGAEVLFEYGISSFGQSVTQVVTVRNTFSGDESITYTEGRNDMMAQIGLLERACPEQNTLSTFTDVYVDPLSPNITYCSPNVLQRSLCASGRTLLGAPCVPPMFPNAASSTPQSKNWTSETWVSLIFSAELWTIESDQTEEDNGFVTFEPDRAQYHASATQLFDLNNDDEEVYDVSGLLRVHCGSGSTLSDEHKPGDIPFQVCVWEFERDVLVTHADWLNGEVKEGRTFFGGVSRMGEGVRGILDNVTKLEVTARGRWISISKSVTRSDENRNGNNGEIVQRQGLNARDVMLTLGLARPLMKFSSEDKASSFLADTFELGLWSSASMALRVMERAISRGISILNDGDVIDAEVVTDTRQIATVDLRFLAQYLGTVAALAGVALIFLVLSR 483
            M WNTN+ELNLFNALKALTVFLLFKP+TTYLTLRIST+LFA +LH+H  AKLNSL  C+ALFDGFIISSVPGRRSL  SLLTAFLL+LTVW GTGAEVLFEYGISSFG SVT+V TVR+T SG+ S+TYTEGRND+MAQIGLLERACPE+NTLST T+VYVDP+SPNITYCSPNVLQRSLCASGRTLLG PCVPPMFPNA+S T           +SLIF+   WT +SDQTE DNGFVTFEP+RAQY  S  QLF L+   + VY+V+GL RVHCGSGS+L +  KPGDIPFQVC+WEFERDVLVTHADWL  + KE     GGVS  GEGVR ILDNV+   VTARGRWISISKS    D +RNGN+ EIVQR+ ++ARDVMLTLG+ARPL+KFSSED  S F  DTFELGLWSSA+M+LRVMERAI  GIS++NDGDVIDAEVV+DTRQIATVDL FL QYL +V  LA  A+ F V+SR
Sbjct:    1 MVWNTNIELNLFNALKALTVFLLFKPVTTYLTLRISTALFATILHKHHVAKLNSLGPCAALFDGFIISSVPGRRSLRYSLLTAFLLLLTVWVGTGAEVLFEYGISSFGSSVTRVTTVRSTVSGNPSVTYTEGRNDIMAQIGLLERACPERNTLSTLTNVYVDPVSPNITYCSPNVLQRSLCASGRTLLGEPCVPPMFPNASSPTATXXXXXXXXXLSLIFTTTKWTFQSDQTENDNGFVTFEPERAQYTLSDRQLFALDIAYDNVYNVTGLRRVHCGSGSSLLNVSKPGDIPFQVCLWEFERDVLVTHADWLIRKEKESGDISGGVSSPGEGVRQILDNVSWFGVTARGRWISISKSAKSYDLDRNGNSEEIVQRRNISARDVMLTLGIARPLVKFSSEDGVS-FNVDTFELGLWSSATMSLRVMERAILLGISVVNDGDVIDAEVVSDTRQIATVDLPFLVQYLASVVVLAAFAVSFSVMSR 482

The following BLAST results are available for this feature:

BLAST of Gcaud7738.t1 vs. uniprot

BLAST of Gcaud7738.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IZM0_9FLOR	6.420e-244	73.91	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 461..481
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 45..79
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 101..460
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 482..535
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..44
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 80..100
None	No IPR available	TMHMM	TMhelix		coord: 460..482

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1982_length_7356_cov_6.654370	contig	NODE_1982_length_7356_cov_6.654370:2208..3815 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7738.t1	Gcaud7738.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1982_length_7356_cov_6.654370 2208..3815 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7738.t1 ID=Gcaud7738.t1|Name=Gcaud7738.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=536bp
MAWNTNLELNLFNALKALTVFLLFKPLTTYLTLRISTSLFAAVLHRHRAA
KLNSLSLCSALFDGFIISSVPGRRSLSRSLLTAFLLVLTVWAGTGAEVLF
EYGISSFGQSVTQVVTVRNTFSGDESITYTEGRNDMMAQIGLLERACPEQ
NTLSTFTDVYVDPLSPNITYCSPNVLQRSLCASGRTLLGAPCVPPMFPNA
ASSTPQSKNWTSETWVSLIFSAELWTIESDQTEEDNGFVTFEPDRAQYHA
SATQLFDLNNDDEEVYDVSGLLRVHCGSGSTLSDEHKPGDIPFQVCVWEF
ERDVLVTHADWLNGEVKEGRTFFGGVSRMGEGVRGILDNVTKLEVTARGR
WISISKSVTRSDENRNGNNGEIVQRQGLNARDVMLTLGLARPLMKFSSED
KASSFLADTFELGLWSSASMALRVMERAISRGISILNDGDVIDAEVVTDT
RQIATVDLRFLAQYLGTVAALAGVALIFLVLSRTAPRLGLGVEDVLGLWA
LDRAGKKLSKKKAKANTVQLDNSENGDSVRVLFEK*