Gcaud1205.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1205.t1
Unique NameGcaud1205.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length84
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1977_length_7374_cov_5.226967contigNODE_1977_length_7374_cov_5.226967:5634..5978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1205Gcaud1205Gracilaria caudata M_176_S67 malegeneNODE_1977_length_7374_cov_5.226967 5634..5978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1205.t1Gcaud1205.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1977_length_7374_cov_5.226967 5634..5978 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1205.t1.stop1Gcaud1205.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1977_length_7374_cov_5.226967 5634..5636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1205.t1.CDS1Gcaud1205.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1977_length_7374_cov_5.226967 5634..5762 -
Gcaud1205.t1.CDS2Gcaud1205.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1977_length_7374_cov_5.226967 5856..5978 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1205.t1.exon1Gcaud1205.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1977_length_7374_cov_5.226967 5634..5762 -
Gcaud1205.t1.exon2Gcaud1205.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1977_length_7374_cov_5.226967 5856..5978 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1205.t1.intron1Gcaud1205.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1977_length_7374_cov_5.226967 5763..5855 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1205.t1.start1Gcaud1205.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1977_length_7374_cov_5.226967 5976..5978 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1205.t1 ID=Gcaud1205.t1|Name=Gcaud1205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=84bp
MLRAVGPLLLSSPDSGFLFYVANDVFEFVHQHLFQIFDLSNRRIRIDPDE
PNDSNHVTQDIQLVESWSIPVVENATCLHGYSV*
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spliced messenger RNA

>Gcaud1205.t1 ID=Gcaud1205.t1|Name=Gcaud1205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=252bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:5634..5978- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGGGCCGTTGGTCCCTTACTACTATCTTCTCCGGACAGTGGTTT
TCTCTTCTACGTTGCGAATGATGTCTTCGAATTCGTCCATCAGCACCTAT
TTCAAATATTTGATCTCTCAAACCGGAGGATTCGAATCGACCCGGATGAG
CCGAATGACTCCAACCATGTGACTCAGGATATTCAACTCGTCGAAAGTTG
GAGTATCCCTGTGGTCGAGAATGCGACTTGTTTGCATGGCTACTCCGTGT
AA
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protein sequence of Gcaud1205.t1

>Gcaud1205.t1 ID=Gcaud1205.t1|Name=Gcaud1205.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=84bp
MLRAVGPLLLSSPDSGFLFYVANDVFEFVHQHLFQIFDLSNRRIRIDPDE
PNDSNHVTQDIQLVESWSIPVVENATCLHGYSV*
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mRNA from alignment at NODE_1977_length_7374_cov_5.226967:5634..5978-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1205.t1 ID=Gcaud1205.t1|Name=Gcaud1205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=345bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:5634..5978- (Gracilaria caudata M_176_S67 male)
ATGCTTCGGGCCGTTGGTCCCTTACTACTATCTTCTCCGGACAGTGGTTT
TCTCTTCTACGTTGCGAATGATGTCTTCGAATTCGTCCATCAGCACCTAT
TTCAAATATTTGATCTCTCAAACGTACGAAGCTTGTGATTTCTCTTTCTC
TCTCTCTCTGTGGCGAATTCATAGCTTCTGCTCTTAACTGTTCGATATTC
ATTACTCCTCCCGAAGCGGAGGATTCGAATCGACCCGGATGAGCCGAATG
ACTCCAACCATGTGACTCAGGATATTCAACTCGTCGAAAGTTGGAGTATC
CCTGTGGTCGAGAATGCGACTTGTTTGCATGGCTACTCCGTGTAA
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Coding sequence (CDS) from alignment at NODE_1977_length_7374_cov_5.226967:5634..5978-

>Gcaud1205.t1 ID=Gcaud1205.t1|Name=Gcaud1205.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=252bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:5634..5978- (Gracilaria caudata M_176_S67 male)
ATGCTTCGGGCCGTTGGTCCCTTACTACTATCTTCTCCGGACAGTGGTTT
TCTCTTCTACGTTGCGAATGATGTCTTCGAATTCGTCCATCAGCACCTAT
TTCAAATATTTGATCTCTCAAACCGGAGGATTCGAATCGACCCGGATGAG
CCGAATGACTCCAACCATGTGACTCAGGATATTCAACTCGTCGAAAGTTG
GAGTATCCCTGTGGTCGAGAATGCGACTTGTTTGCATGGCTACTCCGTGT
AA
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