Gcaud1206.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1206.t1
Unique Name	Gcaud1206.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	295

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1977_length_7374_cov_5.226967	contig	NODE_1977_length_7374_cov_5.226967:6151..7035 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706164.1
Preferred name	UPL1
PFAMs	DUF4414,DUF908,DUF913,HECT,UBA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10592
KEGG Pathway	ko04120,map04120
GOs	GO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Evalue	4.27e-139
EggNOG OGs	COG5021@1\|root,KOG0939@2759\|Eukaryota
EC	2.3.2.26
Description	ubiquitin protein ligase activity
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1206	Gcaud1206	Gracilaria caudata M_176_S67 male	gene	NODE_1977_length_7374_cov_5.226967 6151..7035 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1206.t1.stop1	Gcaud1206.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1977_length_7374_cov_5.226967 6151..6153 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1206.t1.CDS1	Gcaud1206.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1977_length_7374_cov_5.226967 6151..7035 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1206.t1.exon1	Gcaud1206.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1977_length_7374_cov_5.226967 6151..7035 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1206.t1.start1	Gcaud1206.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1977_length_7374_cov_5.226967 7033..7035 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1206.t1	Gcaud1206.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1977_length_7374_cov_5.226967 6151..7035 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1977_length_7374_cov_5.226967:6151..7035-
coding sequence from alignment at NODE_1977_length_7374_cov_5.226967:6151..7035-

mRNA sequence

>Gcaud1206.t1 ID=Gcaud1206.t1|Name=Gcaud1206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=295bp
LFTRSAAKAATYQPDKRSYINREHLETLRFVGRVIAKAIYDGQLIDAYFT
RSFYKHILGMKPNFHDMEGQDPDYYKSLKWILENDCTRIIDYTMSAEYDE
FGKQTVIDLVPNGRNIPVTEENKAEYVRLVTEVRMTKTIEKQIEAFKEGF
YEIIPLEDCKIFNELELELLMSGLPDIDVSDLKANVEYTGYTASSPQVNW
FWRCVSKMDQEDLARLVMFTTGTSKVPLEGFSQLQGMNGVQKFQIHRVSG
DTMRLPSAHTCFNQLDLPEYSTAEILSERLLRAVRECSVGFGFA*

spliced messenger RNA

>Gcaud1206.t1 ID=Gcaud1206.t1|Name=Gcaud1206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=885bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:6151..7035- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTTACCCGATCGGCAGCCAAAGCTGCAACCTACCAGCCTGATAAGCG
TTCGTATATCAATCGAGAGCATCTCGAAACGTTACGGTTCGTTGGCCGTG
TCATTGCTAAAGCAATTTACGATGGCCAGCTAATAGACGCCTACTTCACG
CGATCTTTCTACAAACACATTTTGGGCATGAAGCCGAACTTCCATGATAT
GGAAGGGCAGGATCCGGACTACTACAAATCGCTGAAGTGGATCCTTGAAA
ATGACTGCACGAGAATCATTGACTATACGATGAGCGCGGAGTATGATGAG
TTTGGAAAACAAACCGTGATTGACCTTGTTCCGAATGGAAGAAATATTCC
AGTCACCGAAGAGAATAAGGCTGAATATGTGAGACTAGTGACAGAAGTGC
GCATGACGAAAACGATTGAGAAGCAGATTGAAGCGTTTAAAGAAGGATTC
TATGAGATTATTCCACTCGAGGATTGCAAGATATTTAATGAGCTTGAGCT
AGAGCTTCTGATGTCTGGACTGCCTGATATCGACGTTTCAGACTTGAAGG
CGAACGTGGAGTACACTGGATATACAGCGTCTTCGCCGCAGGTGAATTGG
TTCTGGCGGTGTGTCAGTAAGATGGATCAAGAAGATCTCGCGCGTCTCGT
GATGTTCACCACGGGAACGAGCAAAGTTCCTTTGGAAGGGTTCAGTCAAC
TGCAGGGCATGAATGGGGTTCAGAAGTTCCAAATCCACCGAGTTAGTGGC
GATACGATGCGTCTTCCCTCCGCGCACACGTGCTTCAACCAACTTGACCT
CCCTGAATACAGCACAGCGGAGATTCTGTCGGAAAGGCTACTTCGGGCTG
TTCGTGAATGCAGCGTTGGCTTCGGCTTTGCATGA

protein sequence of Gcaud1206.t1

>Gcaud1206.t1 ID=Gcaud1206.t1|Name=Gcaud1206.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=295bp
LFTRSAAKAATYQPDKRSYINREHLETLRFVGRVIAKAIYDGQLIDAYFT
RSFYKHILGMKPNFHDMEGQDPDYYKSLKWILENDCTRIIDYTMSAEYDE
FGKQTVIDLVPNGRNIPVTEENKAEYVRLVTEVRMTKTIEKQIEAFKEGF
YEIIPLEDCKIFNELELELLMSGLPDIDVSDLKANVEYTGYTASSPQVNW
FWRCVSKMDQEDLARLVMFTTGTSKVPLEGFSQLQGMNGVQKFQIHRVSG
DTMRLPSAHTCFNQLDLPEYSTAEILSERLLRAVRECSVGFGFA*

mRNA from alignment at NODE_1977_length_7374_cov_5.226967:6151..7035-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1206.t1 ID=Gcaud1206.t1|Name=Gcaud1206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=885bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:6151..7035- (Gracilaria caudata M_176_S67 male)
CTGTTTACCCGATCGGCAGCCAAAGCTGCAACCTACCAGCCTGATAAGCG
TTCGTATATCAATCGAGAGCATCTCGAAACGTTACGGTTCGTTGGCCGTG
TCATTGCTAAAGCAATTTACGATGGCCAGCTAATAGACGCCTACTTCACG
CGATCTTTCTACAAACACATTTTGGGCATGAAGCCGAACTTCCATGATAT
GGAAGGGCAGGATCCGGACTACTACAAATCGCTGAAGTGGATCCTTGAAA
ATGACTGCACGAGAATCATTGACTATACGATGAGCGCGGAGTATGATGAG
TTTGGAAAACAAACCGTGATTGACCTTGTTCCGAATGGAAGAAATATTCC
AGTCACCGAAGAGAATAAGGCTGAATATGTGAGACTAGTGACAGAAGTGC
GCATGACGAAAACGATTGAGAAGCAGATTGAAGCGTTTAAAGAAGGATTC
TATGAGATTATTCCACTCGAGGATTGCAAGATATTTAATGAGCTTGAGCT
AGAGCTTCTGATGTCTGGACTGCCTGATATCGACGTTTCAGACTTGAAGG
CGAACGTGGAGTACACTGGATATACAGCGTCTTCGCCGCAGGTGAATTGG
TTCTGGCGGTGTGTCAGTAAGATGGATCAAGAAGATCTCGCGCGTCTCGT
GATGTTCACCACGGGAACGAGCAAAGTTCCTTTGGAAGGGTTCAGTCAAC
TGCAGGGCATGAATGGGGTTCAGAAGTTCCAAATCCACCGAGTTAGTGGC
GATACGATGCGTCTTCCCTCCGCGCACACGTGCTTCAACCAACTTGACCT
CCCTGAATACAGCACAGCGGAGATTCTGTCGGAAAGGCTACTTCGGGCTG
TTCGTGAATGCAGCGTTGGCTTCGGCTTTGCATGA

Coding sequence (CDS) from alignment at NODE_1977_length_7374_cov_5.226967:6151..7035-

>Gcaud1206.t1 ID=Gcaud1206.t1|Name=Gcaud1206.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=885bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:6151..7035- (Gracilaria caudata M_176_S67 male)
CTGTTTACCCGATCGGCAGCCAAAGCTGCAACCTACCAGCCTGATAAGCG
TTCGTATATCAATCGAGAGCATCTCGAAACGTTACGGTTCGTTGGCCGTG
TCATTGCTAAAGCAATTTACGATGGCCAGCTAATAGACGCCTACTTCACG
CGATCTTTCTACAAACACATTTTGGGCATGAAGCCGAACTTCCATGATAT
GGAAGGGCAGGATCCGGACTACTACAAATCGCTGAAGTGGATCCTTGAAA
ATGACTGCACGAGAATCATTGACTATACGATGAGCGCGGAGTATGATGAG
TTTGGAAAACAAACCGTGATTGACCTTGTTCCGAATGGAAGAAATATTCC
AGTCACCGAAGAGAATAAGGCTGAATATGTGAGACTAGTGACAGAAGTGC
GCATGACGAAAACGATTGAGAAGCAGATTGAAGCGTTTAAAGAAGGATTC
TATGAGATTATTCCACTCGAGGATTGCAAGATATTTAATGAGCTTGAGCT
AGAGCTTCTGATGTCTGGACTGCCTGATATCGACGTTTCAGACTTGAAGG
CGAACGTGGAGTACACTGGATATACAGCGTCTTCGCCGCAGGTGAATTGG
TTCTGGCGGTGTGTCAGTAAGATGGATCAAGAAGATCTCGCGCGTCTCGT
GATGTTCACCACGGGAACGAGCAAAGTTCCTTTGGAAGGGTTCAGTCAAC
TGCAGGGCATGAATGGGGTTCAGAAGTTCCAAATCCACCGAGTTAGTGGC
GATACGATGCGTCTTCCCTCCGCGCACACGTGCTTCAACCAACTTGACCT
CCCTGAATACAGCACAGCGGAGATTCTGTCGGAAAGGCTACTTCGGGCTG
TTCGTGAATGCAGCGTTGGCTTCGGCTTTGCATGA