Gcaud1204.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1204.t1
Unique NameGcaud1204.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length87
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1977_length_7374_cov_5.226967contigNODE_1977_length_7374_cov_5.226967:3005..3344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc12g015630.1.1
PFAMsA2L_zn_ribbon
Max annot lvl35493|Streptophyta
Evalue7.37e-24
EggNOG OGs2CXBB@1|root,2S4KC@2759|Eukaryota,37VZQ@33090|Viridiplantae,3GKAF@35493|Streptophyta,44KNS@71274|asterids
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1204Gcaud1204Gracilaria caudata M_176_S67 malegeneNODE_1977_length_7374_cov_5.226967 3005..3344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1204.t1Gcaud1204.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1977_length_7374_cov_5.226967 3005..3344 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1204.t1.start1Gcaud1204.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1977_length_7374_cov_5.226967 3005..3007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1204.t1.CDS1Gcaud1204.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1977_length_7374_cov_5.226967 3005..3213 +
Gcaud1204.t1.CDS2Gcaud1204.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1977_length_7374_cov_5.226967 3293..3344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1204.t1.exon1Gcaud1204.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1977_length_7374_cov_5.226967 3005..3213 +
Gcaud1204.t1.exon2Gcaud1204.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1977_length_7374_cov_5.226967 3293..3344 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1204.t1.intron1Gcaud1204.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1977_length_7374_cov_5.226967 3214..3292 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1204.t1.stop1Gcaud1204.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1977_length_7374_cov_5.226967 3342..3344 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1204.t1 ID=Gcaud1204.t1|Name=Gcaud1204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=87bp
MQLAPESLSPDVLTPLSPDVSVVVGSIALAIPFFVAAVLFGERIYRQRTC
AQCNGSGLVKKGRFMKRCPKCGGFLPWQNWKRFFTG*
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spliced messenger RNA

>Gcaud1204.t1 ID=Gcaud1204.t1|Name=Gcaud1204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=261bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:3005..3344+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTCGCGCCGGAGTCGCTCTCGCCGGACGTGCTTACGCCTTTGTC
GCCAGATGTGTCTGTGGTTGTTGGCAGCATTGCTCTTGCCATACCGTTCT
TTGTGGCCGCTGTATTGTTCGGTGAACGAATTTATCGACAGCGGACTTGT
GCGCAGTGCAATGGAAGCGGACTTGTGAAAAAGGGTCGCTTCATGAAAAG
ATGTCCGAAGTGCGGTGGATTCTTGCCGTGGCAGAACTGGAAACGTTTCT
TCACTGGTTGA
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protein sequence of Gcaud1204.t1

>Gcaud1204.t1 ID=Gcaud1204.t1|Name=Gcaud1204.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=87bp
MQLAPESLSPDVLTPLSPDVSVVVGSIALAIPFFVAAVLFGERIYRQRTC
AQCNGSGLVKKGRFMKRCPKCGGFLPWQNWKRFFTG*
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mRNA from alignment at NODE_1977_length_7374_cov_5.226967:3005..3344+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1204.t1 ID=Gcaud1204.t1|Name=Gcaud1204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=340bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:3005..3344+ (Gracilaria caudata M_176_S67 male)
ATGCAGCTCGCGCCGGAGTCGCTCTCGCCGGACGTGCTTACGCCTTTGTC
GCCAGATGTGTCTGTGGTTGTTGGCAGCATTGCTCTTGCCATACCGTTCT
TTGTGGCCGCTGTATTGTTCGGTGAACGAATTTATCGACAGCGGACTTGT
GCGCAGTGCAATGGAAGCGGACTTGTGAAAAAGGGTCGCTTCATGAAAAG
ATGTCCGAAGTAAGTCTAAGCTTTTTGATTTTGACCATGCCTTTTGTTTT
GTTTACTTATCTGCTTTCTTGTTCCTTACCTTCGGTAGGTGCGGTGGATT
CTTGCCGTGGCAGAACTGGAAACGTTTCTTCACTGGTTGA
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Coding sequence (CDS) from alignment at NODE_1977_length_7374_cov_5.226967:3005..3344+

>Gcaud1204.t1 ID=Gcaud1204.t1|Name=Gcaud1204.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=261bp|location=Sequence derived from alignment at NODE_1977_length_7374_cov_5.226967:3005..3344+ (Gracilaria caudata M_176_S67 male)
ATGCAGCTCGCGCCGGAGTCGCTCTCGCCGGACGTGCTTACGCCTTTGTC
GCCAGATGTGTCTGTGGTTGTTGGCAGCATTGCTCTTGCCATACCGTTCT
TTGTGGCCGCTGTATTGTTCGGTGAACGAATTTATCGACAGCGGACTTGT
GCGCAGTGCAATGGAAGCGGACTTGTGAAAAAGGGTCGCTTCATGAAAAG
ATGTCCGAAGTGCGGTGGATTCTTGCCGTGGCAGAACTGGAAACGTTTCT
TCACTGGTTGA
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