Gcaud221.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud221.t1
Unique Name	Gcaud221.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	495

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1971_length_7398_cov_4.939647	contig	NODE_1971_length_7398_cov_4.939647:2403..3887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD19635
PFAMs	AAA,BCS1_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08900
Evalue	5.93e-54
EggNOG OGs	COG0465@1\|root,KOG0743@2759\|Eukaryota
Description	respiratory chain complex III assembly
COG category	O
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud221	Gcaud221	Gracilaria caudata M_176_S67 male	gene	NODE_1971_length_7398_cov_4.939647 2403..3887 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud221.t1.start1	Gcaud221.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1971_length_7398_cov_4.939647 2403..2405 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud221.t1.CDS1	Gcaud221.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1971_length_7398_cov_4.939647 2403..3887 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud221.t1.exon1	Gcaud221.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1971_length_7398_cov_4.939647 2403..3887 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud221.t1.stop1	Gcaud221.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1971_length_7398_cov_4.939647 3885..3887 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud221.t1	Gcaud221.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1971_length_7398_cov_4.939647 2403..3887 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1971_length_7398_cov_4.939647:2403..3887+
coding sequence from alignment at NODE_1971_length_7398_cov_4.939647:2403..3887+

mRNA sequence

>Gcaud221.t1 ID=Gcaud221.t1|Name=Gcaud221.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=495bp
MASKPQPLSFSSVPQATLTHFPQEHVKYLEHTLDVPSERISSCTVTQNTP
RLFNPILEYAALCPNEADANAARSYFVNSADPFGDGPEDEYYSDDDSSTD
GEIDEYVLPDARRANAPKPNLQMDVGSTIVRWPPPKSLIPDFLFDRGNQD
PYKLPKSMGDSISLHIMHYEMGTPQRGYDGMDTLHVIRISTSCGDDALKQ
FLSGIMQWKYDRTNPEHEGNMYNLYRFKADNCGSGQWFGEGARRARPLDS
VVLEDGLMEKLVTDLESFLRPNCKSWYVEHGLPYRRSYLFEGPPGTGKTS
TIRVLAGKYSLPCYFLSMTNEKFSNQILLDALSTVPSYSLLVLEDADALF
KSDRTSATNASVTFSGLLNALDGVTSTEGLVTIMTTNHVDRLDPALIRGG
RVDRQFQFSPPSRKQLSTLFKLFYKDGDEKIADEFGNKVCSWNGGSGTLT
IATLQQLFIQYRDMTADECVNGVHQFLMDCDFVHRKSFGDKKGD*

spliced messenger RNA

>Gcaud221.t1 ID=Gcaud221.t1|Name=Gcaud221.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at NODE_1971_length_7398_cov_4.939647:2403..3887+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCAAACCCCAGCCGCTCTCTTTCAGCAGCGTTCCGCAAGCTAC
TTTGACTCATTTTCCGCAAGAGCATGTGAAGTACCTCGAGCATACCCTCG
ACGTTCCGTCCGAGCGCATAAGCTCATGCACAGTCACACAGAATACGCCA
AGACTGTTCAACCCGATTCTCGAATATGCCGCCCTTTGTCCCAATGAAGC
TGATGCCAATGCTGCTCGCTCTTATTTCGTGAACTCAGCAGATCCATTTG
GAGACGGTCCGGAAGATGAATATTACAGCGACGATGACAGTAGTACTGAC
GGGGAAATAGATGAATATGTACTGCCGGATGCTCGACGAGCAAATGCTCC
GAAACCGAACCTTCAAATGGATGTTGGTTCAACCATTGTTCGATGGCCAC
CTCCAAAATCCCTCATTCCGGATTTTCTCTTTGATCGAGGCAACCAAGAT
CCATACAAGCTCCCAAAATCTATGGGAGATTCCATTTCTCTACACATCAT
GCATTACGAAATGGGTACACCTCAGAGAGGATATGACGGTATGGACACTC
TGCATGTAATCCGAATATCAACATCTTGTGGCGATGATGCTCTGAAGCAG
TTCCTGTCCGGAATTATGCAATGGAAGTATGACCGAACCAATCCCGAGCA
CGAAGGAAATATGTACAACTTATATCGTTTCAAGGCGGACAACTGTGGAT
CGGGACAATGGTTCGGAGAAGGCGCTCGGCGGGCACGTCCTCTCGATTCA
GTCGTCCTGGAAGACGGATTGATGGAAAAGCTCGTCACAGATCTTGAATC
GTTTCTTCGTCCGAATTGTAAGAGCTGGTACGTCGAGCATGGTTTACCGT
ATCGTCGAAGTTATTTGTTTGAGGGTCCCCCTGGTACTGGAAAAACAAGT
ACCATCCGAGTACTGGCCGGTAAATACTCGCTTCCGTGCTACTTTCTTTC
TATGACGAATGAAAAGTTCAGTAATCAGATTTTGCTTGATGCGCTATCAA
CCGTTCCTTCTTATTCTTTGCTTGTTCTTGAAGACGCGGACGCGCTTTTC
AAATCAGATCGGACAAGTGCTACAAATGCTTCCGTTACGTTTTCTGGCTT
GTTGAATGCTCTGGATGGCGTTACAAGTACGGAAGGGCTTGTGACAATCA
TGACCACCAATCACGTCGACCGACTTGATCCGGCACTTATTCGAGGCGGG
CGCGTTGATAGACAGTTCCAATTTTCGCCACCGTCAAGAAAACAATTGAG
CACACTGTTCAAATTGTTCTACAAGGATGGTGATGAAAAGATTGCGGATG
AATTTGGCAACAAGGTTTGTTCTTGGAATGGTGGATCCGGAACTTTGACG
ATTGCTACATTGCAGCAGCTCTTCATTCAGTACCGTGATATGACGGCTGA
CGAGTGCGTGAACGGGGTCCATCAGTTTCTGATGGATTGCGATTTTGTCC
ATCGCAAGAGTTTTGGAGATAAGAAGGGAGATTAA

protein sequence of Gcaud221.t1

>Gcaud221.t1 ID=Gcaud221.t1|Name=Gcaud221.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=495bp
MASKPQPLSFSSVPQATLTHFPQEHVKYLEHTLDVPSERISSCTVTQNTP
RLFNPILEYAALCPNEADANAARSYFVNSADPFGDGPEDEYYSDDDSSTD
GEIDEYVLPDARRANAPKPNLQMDVGSTIVRWPPPKSLIPDFLFDRGNQD
PYKLPKSMGDSISLHIMHYEMGTPQRGYDGMDTLHVIRISTSCGDDALKQ
FLSGIMQWKYDRTNPEHEGNMYNLYRFKADNCGSGQWFGEGARRARPLDS
VVLEDGLMEKLVTDLESFLRPNCKSWYVEHGLPYRRSYLFEGPPGTGKTS
TIRVLAGKYSLPCYFLSMTNEKFSNQILLDALSTVPSYSLLVLEDADALF
KSDRTSATNASVTFSGLLNALDGVTSTEGLVTIMTTNHVDRLDPALIRGG
RVDRQFQFSPPSRKQLSTLFKLFYKDGDEKIADEFGNKVCSWNGGSGTLT
IATLQQLFIQYRDMTADECVNGVHQFLMDCDFVHRKSFGDKKGD*

mRNA from alignment at NODE_1971_length_7398_cov_4.939647:2403..3887+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud221.t1 ID=Gcaud221.t1|Name=Gcaud221.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at NODE_1971_length_7398_cov_4.939647:2403..3887+ (Gracilaria caudata M_176_S67 male)
ATGGCATCCAAACCCCAGCCGCTCTCTTTCAGCAGCGTTCCGCAAGCTAC
TTTGACTCATTTTCCGCAAGAGCATGTGAAGTACCTCGAGCATACCCTCG
ACGTTCCGTCCGAGCGCATAAGCTCATGCACAGTCACACAGAATACGCCA
AGACTGTTCAACCCGATTCTCGAATATGCCGCCCTTTGTCCCAATGAAGC
TGATGCCAATGCTGCTCGCTCTTATTTCGTGAACTCAGCAGATCCATTTG
GAGACGGTCCGGAAGATGAATATTACAGCGACGATGACAGTAGTACTGAC
GGGGAAATAGATGAATATGTACTGCCGGATGCTCGACGAGCAAATGCTCC
GAAACCGAACCTTCAAATGGATGTTGGTTCAACCATTGTTCGATGGCCAC
CTCCAAAATCCCTCATTCCGGATTTTCTCTTTGATCGAGGCAACCAAGAT
CCATACAAGCTCCCAAAATCTATGGGAGATTCCATTTCTCTACACATCAT
GCATTACGAAATGGGTACACCTCAGAGAGGATATGACGGTATGGACACTC
TGCATGTAATCCGAATATCAACATCTTGTGGCGATGATGCTCTGAAGCAG
TTCCTGTCCGGAATTATGCAATGGAAGTATGACCGAACCAATCCCGAGCA
CGAAGGAAATATGTACAACTTATATCGTTTCAAGGCGGACAACTGTGGAT
CGGGACAATGGTTCGGAGAAGGCGCTCGGCGGGCACGTCCTCTCGATTCA
GTCGTCCTGGAAGACGGATTGATGGAAAAGCTCGTCACAGATCTTGAATC
GTTTCTTCGTCCGAATTGTAAGAGCTGGTACGTCGAGCATGGTTTACCGT
ATCGTCGAAGTTATTTGTTTGAGGGTCCCCCTGGTACTGGAAAAACAAGT
ACCATCCGAGTACTGGCCGGTAAATACTCGCTTCCGTGCTACTTTCTTTC
TATGACGAATGAAAAGTTCAGTAATCAGATTTTGCTTGATGCGCTATCAA
CCGTTCCTTCTTATTCTTTGCTTGTTCTTGAAGACGCGGACGCGCTTTTC
AAATCAGATCGGACAAGTGCTACAAATGCTTCCGTTACGTTTTCTGGCTT
GTTGAATGCTCTGGATGGCGTTACAAGTACGGAAGGGCTTGTGACAATCA
TGACCACCAATCACGTCGACCGACTTGATCCGGCACTTATTCGAGGCGGG
CGCGTTGATAGACAGTTCCAATTTTCGCCACCGTCAAGAAAACAATTGAG
CACACTGTTCAAATTGTTCTACAAGGATGGTGATGAAAAGATTGCGGATG
AATTTGGCAACAAGGTTTGTTCTTGGAATGGTGGATCCGGAACTTTGACG
ATTGCTACATTGCAGCAGCTCTTCATTCAGTACCGTGATATGACGGCTGA
CGAGTGCGTGAACGGGGTCCATCAGTTTCTGATGGATTGCGATTTTGTCC
ATCGCAAGAGTTTTGGAGATAAGAAGGGAGATTAA

Coding sequence (CDS) from alignment at NODE_1971_length_7398_cov_4.939647:2403..3887+

>Gcaud221.t1 ID=Gcaud221.t1|Name=Gcaud221.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1485bp|location=Sequence derived from alignment at NODE_1971_length_7398_cov_4.939647:2403..3887+ (Gracilaria caudata M_176_S67 male)
ATGGCATCCAAACCCCAGCCGCTCTCTTTCAGCAGCGTTCCGCAAGCTAC
TTTGACTCATTTTCCGCAAGAGCATGTGAAGTACCTCGAGCATACCCTCG
ACGTTCCGTCCGAGCGCATAAGCTCATGCACAGTCACACAGAATACGCCA
AGACTGTTCAACCCGATTCTCGAATATGCCGCCCTTTGTCCCAATGAAGC
TGATGCCAATGCTGCTCGCTCTTATTTCGTGAACTCAGCAGATCCATTTG
GAGACGGTCCGGAAGATGAATATTACAGCGACGATGACAGTAGTACTGAC
GGGGAAATAGATGAATATGTACTGCCGGATGCTCGACGAGCAAATGCTCC
GAAACCGAACCTTCAAATGGATGTTGGTTCAACCATTGTTCGATGGCCAC
CTCCAAAATCCCTCATTCCGGATTTTCTCTTTGATCGAGGCAACCAAGAT
CCATACAAGCTCCCAAAATCTATGGGAGATTCCATTTCTCTACACATCAT
GCATTACGAAATGGGTACACCTCAGAGAGGATATGACGGTATGGACACTC
TGCATGTAATCCGAATATCAACATCTTGTGGCGATGATGCTCTGAAGCAG
TTCCTGTCCGGAATTATGCAATGGAAGTATGACCGAACCAATCCCGAGCA
CGAAGGAAATATGTACAACTTATATCGTTTCAAGGCGGACAACTGTGGAT
CGGGACAATGGTTCGGAGAAGGCGCTCGGCGGGCACGTCCTCTCGATTCA
GTCGTCCTGGAAGACGGATTGATGGAAAAGCTCGTCACAGATCTTGAATC
GTTTCTTCGTCCGAATTGTAAGAGCTGGTACGTCGAGCATGGTTTACCGT
ATCGTCGAAGTTATTTGTTTGAGGGTCCCCCTGGTACTGGAAAAACAAGT
ACCATCCGAGTACTGGCCGGTAAATACTCGCTTCCGTGCTACTTTCTTTC
TATGACGAATGAAAAGTTCAGTAATCAGATTTTGCTTGATGCGCTATCAA
CCGTTCCTTCTTATTCTTTGCTTGTTCTTGAAGACGCGGACGCGCTTTTC
AAATCAGATCGGACAAGTGCTACAAATGCTTCCGTTACGTTTTCTGGCTT
GTTGAATGCTCTGGATGGCGTTACAAGTACGGAAGGGCTTGTGACAATCA
TGACCACCAATCACGTCGACCGACTTGATCCGGCACTTATTCGAGGCGGG
CGCGTTGATAGACAGTTCCAATTTTCGCCACCGTCAAGAAAACAATTGAG
CACACTGTTCAAATTGTTCTACAAGGATGGTGATGAAAAGATTGCGGATG
AATTTGGCAACAAGGTTTGTTCTTGGAATGGTGGATCCGGAACTTTGACG
ATTGCTACATTGCAGCAGCTCTTCATTCAGTACCGTGATATGACGGCTGA
CGAGTGCGTGAACGGGGTCCATCAGTTTCTGATGGATTGCGATTTTGTCC
ATCGCAAGAGTTTTGGAGATAAGAAGGGAGATTAA