Gcaud1917.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1917.t1
Unique Name	Gcaud1917.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	430

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:2551..3840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	318829.MGG_10312T0
Preferred name	MSS116
PFAMs	DEAD,Helicase_C
Max annot lvl	4751\|Fungi
KEGG ko	ko:K17679
GOs	GO:0000166,GO:0000372,GO:0000373,GO:0000375,GO:0000376,GO:0000377,GO:0000959,GO:0000963,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006351,GO:0006354,GO:0006390,GO:0006392,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0030554,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033592,GO:0034337,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0090615,GO:0097159,GO:0097367,GO:0097617,GO:0097659,GO:0140053,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Evalue	4.91e-20
EggNOG OGs	COG0513@1\|root,KOG0342@2759\|Eukaryota,38E1A@33154\|Opisthokonta,3NYNU@4751\|Fungi,3QQQS@4890\|Ascomycota,211PM@147550\|Sordariomycetes,41KCX@639021\|Magnaporthales
EC	3.6.4.13
Description	Belongs to the DEAD box helicase family
COG category	A
BRITE	ko00000,ko01000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1917	Gcaud1917	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 2551..3840 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1917.t1.start1	Gcaud1917.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 2551..2553 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1917.t1.CDS1	Gcaud1917.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 2551..3840 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1917.t1.exon1	Gcaud1917.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 2551..3840 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1917.t1.stop1	Gcaud1917.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 3838..3840 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1917.t1	Gcaud1917.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 2551..3840 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:2551..3840+
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:2551..3840+

mRNA sequence

>Gcaud1917.t1 ID=Gcaud1917.t1|Name=Gcaud1917.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=430bp
LKGKILTTLAGRERAEHALIVVPTREAALLAAAEAELRGGFKVIVAAGEG
FGSWKHAAMNANSSKRAVIVVATPRGAVKQFIQNAHGPPWLKRVQFFVVV
DLTRITSTGALDSLQKVLKRLSDKARRKNVLLEPRPLEGKLKDMAMEMVR
EKHEVVQWAQQVKPDVQTMTKQEVVAQVDYSLVRQKAMVGSPRQRLEELF
RITESVHLKSSVYKMIVFFPAARIIECYANMCREHGVNVIDIHSQTTTAN
RQRGLQVFFEAERAVMFASDTLASCATLPPIDCVVHMDIPNQKDHYLRRI
GLLTQKADKGRDLSSVILLGEDEFRTVTNTDSDFAFELEREEIAELGRQS
FTTNALDEKARRRAYVSLLSFYNTLRRKIGWSKEQMVLEANEWAKQTFGE
IPKLDKKDVNRVRLWKVRGLHTVQETATL*

spliced messenger RNA

>Gcaud1917.t1 ID=Gcaud1917.t1|Name=Gcaud1917.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:2551..3840+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAAGGGAAAGATTCTCACAACACTTGCTGGACGTGAACGTGCGGAGCA
TGCACTCATCGTTGTGCCAACGCGAGAAGCGGCGTTGCTCGCAGCCGCCG
AAGCAGAGTTGCGTGGAGGTTTCAAGGTAATCGTAGCTGCAGGTGAAGGA
TTTGGGAGCTGGAAACATGCTGCAATGAACGCAAACTCATCAAAGAGAGC
CGTTATTGTCGTCGCTACGCCAAGAGGCGCCGTCAAGCAGTTCATACAGA
ATGCTCATGGTCCTCCATGGCTGAAGAGGGTACAGTTTTTCGTGGTTGTA
GATCTCACTCGTATTACTTCAACTGGAGCGTTAGACAGTCTGCAGAAGGT
TTTGAAAAGACTATCGGATAAGGCACGTCGTAAGAATGTGCTTTTGGAGC
CAAGACCCCTCGAGGGGAAACTTAAAGACATGGCCATGGAAATGGTCAGG
GAAAAGCATGAAGTTGTGCAGTGGGCACAACAAGTGAAACCTGATGTCCA
GACAATGACAAAACAAGAAGTGGTGGCCCAAGTCGACTACAGCTTAGTCC
GTCAAAAAGCTATGGTGGGATCTCCGAGGCAAAGACTTGAAGAATTATTC
AGGATAACTGAAAGCGTACATCTAAAGTCTAGCGTTTACAAGATGATTGT
GTTCTTTCCTGCAGCCAGAATCATCGAGTGCTACGCAAATATGTGCCGTG
AACATGGTGTCAACGTTATCGACATTCATTCGCAAACAACTACTGCAAAT
CGGCAGAGAGGTTTACAAGTCTTTTTCGAGGCTGAGCGGGCTGTAATGTT
TGCTTCAGATACCCTTGCTTCTTGTGCAACCTTGCCCCCGATTGACTGTG
TGGTGCATATGGACATCCCGAACCAAAAAGATCACTACCTTAGGCGCATT
GGGCTTTTAACACAGAAGGCGGACAAAGGCAGAGACCTGTCGAGTGTGAT
TTTACTCGGCGAAGACGAATTTCGGACGGTTACAAACACGGATAGTGATT
TTGCTTTTGAACTCGAGCGCGAAGAAATTGCAGAGCTAGGCAGACAGAGT
TTCACTACTAATGCACTTGATGAAAAGGCTAGGCGGCGAGCATATGTATC
ATTGCTTTCATTCTATAACACCCTTCGAAGAAAGATCGGATGGAGTAAAG
AACAGATGGTGCTGGAGGCCAATGAATGGGCAAAACAGACTTTCGGGGAA
ATCCCGAAGCTTGACAAAAAGGATGTCAACAGAGTACGATTGTGGAAGGT
TCGTGGGCTTCATACGGTGCAAGAAACTGCTACCCTATGA

protein sequence of Gcaud1917.t1

>Gcaud1917.t1 ID=Gcaud1917.t1|Name=Gcaud1917.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=430bp
LKGKILTTLAGRERAEHALIVVPTREAALLAAAEAELRGGFKVIVAAGEG
FGSWKHAAMNANSSKRAVIVVATPRGAVKQFIQNAHGPPWLKRVQFFVVV
DLTRITSTGALDSLQKVLKRLSDKARRKNVLLEPRPLEGKLKDMAMEMVR
EKHEVVQWAQQVKPDVQTMTKQEVVAQVDYSLVRQKAMVGSPRQRLEELF
RITESVHLKSSVYKMIVFFPAARIIECYANMCREHGVNVIDIHSQTTTAN
RQRGLQVFFEAERAVMFASDTLASCATLPPIDCVVHMDIPNQKDHYLRRI
GLLTQKADKGRDLSSVILLGEDEFRTVTNTDSDFAFELEREEIAELGRQS
FTTNALDEKARRRAYVSLLSFYNTLRRKIGWSKEQMVLEANEWAKQTFGE
IPKLDKKDVNRVRLWKVRGLHTVQETATL*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:2551..3840+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1917.t1 ID=Gcaud1917.t1|Name=Gcaud1917.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:2551..3840+ (Gracilaria caudata M_176_S67 male)
CTGAAGGGAAAGATTCTCACAACACTTGCTGGACGTGAACGTGCGGAGCA
TGCACTCATCGTTGTGCCAACGCGAGAAGCGGCGTTGCTCGCAGCCGCCG
AAGCAGAGTTGCGTGGAGGTTTCAAGGTAATCGTAGCTGCAGGTGAAGGA
TTTGGGAGCTGGAAACATGCTGCAATGAACGCAAACTCATCAAAGAGAGC
CGTTATTGTCGTCGCTACGCCAAGAGGCGCCGTCAAGCAGTTCATACAGA
ATGCTCATGGTCCTCCATGGCTGAAGAGGGTACAGTTTTTCGTGGTTGTA
GATCTCACTCGTATTACTTCAACTGGAGCGTTAGACAGTCTGCAGAAGGT
TTTGAAAAGACTATCGGATAAGGCACGTCGTAAGAATGTGCTTTTGGAGC
CAAGACCCCTCGAGGGGAAACTTAAAGACATGGCCATGGAAATGGTCAGG
GAAAAGCATGAAGTTGTGCAGTGGGCACAACAAGTGAAACCTGATGTCCA
GACAATGACAAAACAAGAAGTGGTGGCCCAAGTCGACTACAGCTTAGTCC
GTCAAAAAGCTATGGTGGGATCTCCGAGGCAAAGACTTGAAGAATTATTC
AGGATAACTGAAAGCGTACATCTAAAGTCTAGCGTTTACAAGATGATTGT
GTTCTTTCCTGCAGCCAGAATCATCGAGTGCTACGCAAATATGTGCCGTG
AACATGGTGTCAACGTTATCGACATTCATTCGCAAACAACTACTGCAAAT
CGGCAGAGAGGTTTACAAGTCTTTTTCGAGGCTGAGCGGGCTGTAATGTT
TGCTTCAGATACCCTTGCTTCTTGTGCAACCTTGCCCCCGATTGACTGTG
TGGTGCATATGGACATCCCGAACCAAAAAGATCACTACCTTAGGCGCATT
GGGCTTTTAACACAGAAGGCGGACAAAGGCAGAGACCTGTCGAGTGTGAT
TTTACTCGGCGAAGACGAATTTCGGACGGTTACAAACACGGATAGTGATT
TTGCTTTTGAACTCGAGCGCGAAGAAATTGCAGAGCTAGGCAGACAGAGT
TTCACTACTAATGCACTTGATGAAAAGGCTAGGCGGCGAGCATATGTATC
ATTGCTTTCATTCTATAACACCCTTCGAAGAAAGATCGGATGGAGTAAAG
AACAGATGGTGCTGGAGGCCAATGAATGGGCAAAACAGACTTTCGGGGAA
ATCCCGAAGCTTGACAAAAAGGATGTCAACAGAGTACGATTGTGGAAGGT
TCGTGGGCTTCATACGGTGCAAGAAACTGCTACCCTATGA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:2551..3840+

>Gcaud1917.t1 ID=Gcaud1917.t1|Name=Gcaud1917.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1290bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:2551..3840+ (Gracilaria caudata M_176_S67 male)
CTGAAGGGAAAGATTCTCACAACACTTGCTGGACGTGAACGTGCGGAGCA
TGCACTCATCGTTGTGCCAACGCGAGAAGCGGCGTTGCTCGCAGCCGCCG
AAGCAGAGTTGCGTGGAGGTTTCAAGGTAATCGTAGCTGCAGGTGAAGGA
TTTGGGAGCTGGAAACATGCTGCAATGAACGCAAACTCATCAAAGAGAGC
CGTTATTGTCGTCGCTACGCCAAGAGGCGCCGTCAAGCAGTTCATACAGA
ATGCTCATGGTCCTCCATGGCTGAAGAGGGTACAGTTTTTCGTGGTTGTA
GATCTCACTCGTATTACTTCAACTGGAGCGTTAGACAGTCTGCAGAAGGT
TTTGAAAAGACTATCGGATAAGGCACGTCGTAAGAATGTGCTTTTGGAGC
CAAGACCCCTCGAGGGGAAACTTAAAGACATGGCCATGGAAATGGTCAGG
GAAAAGCATGAAGTTGTGCAGTGGGCACAACAAGTGAAACCTGATGTCCA
GACAATGACAAAACAAGAAGTGGTGGCCCAAGTCGACTACAGCTTAGTCC
GTCAAAAAGCTATGGTGGGATCTCCGAGGCAAAGACTTGAAGAATTATTC
AGGATAACTGAAAGCGTACATCTAAAGTCTAGCGTTTACAAGATGATTGT
GTTCTTTCCTGCAGCCAGAATCATCGAGTGCTACGCAAATATGTGCCGTG
AACATGGTGTCAACGTTATCGACATTCATTCGCAAACAACTACTGCAAAT
CGGCAGAGAGGTTTACAAGTCTTTTTCGAGGCTGAGCGGGCTGTAATGTT
TGCTTCAGATACCCTTGCTTCTTGTGCAACCTTGCCCCCGATTGACTGTG
TGGTGCATATGGACATCCCGAACCAAAAAGATCACTACCTTAGGCGCATT
GGGCTTTTAACACAGAAGGCGGACAAAGGCAGAGACCTGTCGAGTGTGAT
TTTACTCGGCGAAGACGAATTTCGGACGGTTACAAACACGGATAGTGATT
TTGCTTTTGAACTCGAGCGCGAAGAAATTGCAGAGCTAGGCAGACAGAGT
TTCACTACTAATGCACTTGATGAAAAGGCTAGGCGGCGAGCATATGTATC
ATTGCTTTCATTCTATAACACCCTTCGAAGAAAGATCGGATGGAGTAAAG
AACAGATGGTGCTGGAGGCCAATGAATGGGCAAAACAGACTTTCGGGGAA
ATCCCGAAGCTTGACAAAAAGGATGTCAACAGAGTACGATTGTGGAAGGT
TCGTGGGCTTCATACGGTGCAAGAAACTGCTACCCTATGA