Gcaud1921.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1921.t1
Unique NameGcaud1921.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:12991..13575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5888.CAK69966
PFAMsProfilin
Max annot lvl5878|Ciliophora
Evalue9.49e-10
EggNOG OGs2CYA8@1|root,2S34V@2759|Eukaryota,3ZE53@5878|Ciliophora
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1921Gcaud1921Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 12991..13575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1921.t1Gcaud1921.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 12991..13575 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1921.t1.stop1Gcaud1921.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 12991..12993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1921.t1.CDS1Gcaud1921.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 12991..13318 -
Gcaud1921.t1.CDS2Gcaud1921.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 13436..13575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1921.t1.exon1Gcaud1921.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 12991..13318 -
Gcaud1921.t1.exon2Gcaud1921.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 13436..13575 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1921.t1.intron1Gcaud1921.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 13319..13435 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1921.t1.start1Gcaud1921.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 13573..13575 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1921.t1 ID=Gcaud1921.t1|Name=Gcaud1921.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=156bp
MSLTRERLDGADEYLKMDWDVIHIFNHTKSIITLPSSKTTLTSNEAEALP
LLFNSREYALRAGIVLNSESFDVHQWESTKGVDLVYGRRGDAVSGEGACA
FRFKTSDYPEVHGAITYSFPSLSTNAVTKLISFLNDLPNKLESLRKTDSS
ISEAT*
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spliced messenger RNA

>Gcaud1921.t1 ID=Gcaud1921.t1|Name=Gcaud1921.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=468bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:12991..13575- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTCACGCGAGAGAGATTAGATGGTGCCGATGAATACCTCAAAAT
GGACTGGGATGTGATTCACATTTTCAATCACACCAAATCAATAATCACGC
TTCCATCCTCAAAGACGACATTAACATCCAACGAAGCAGAAGCGCTTCCT
CTACTCTTCAATTCCCGAGAATACGCGCTCAGAGCGGGAATCGTGCTGAA
CTCTGAGAGCTTTGATGTCCATCAGTGGGAATCTACGAAAGGCGTGGATC
TGGTGTACGGCAGACGGGGGGACGCAGTCTCAGGCGAGGGGGCTTGTGCG
TTTCGATTCAAAACAAGTGATTATCCTGAAGTACACGGTGCCATAACGTA
CTCTTTTCCGTCGCTTTCTACAAATGCTGTCACAAAGCTTATATCATTCT
TGAACGACTTACCAAACAAACTTGAGTCCTTGCGGAAGACAGATTCCTCA
ATCTCAGAAGCAACTTAA
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protein sequence of Gcaud1921.t1

>Gcaud1921.t1 ID=Gcaud1921.t1|Name=Gcaud1921.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=156bp
MSLTRERLDGADEYLKMDWDVIHIFNHTKSIITLPSSKTTLTSNEAEALP
LLFNSREYALRAGIVLNSESFDVHQWESTKGVDLVYGRRGDAVSGEGACA
FRFKTSDYPEVHGAITYSFPSLSTNAVTKLISFLNDLPNKLESLRKTDSS
ISEAT*
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mRNA from alignment at NODE_105_length_50300_cov_4.471768:12991..13575-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1921.t1 ID=Gcaud1921.t1|Name=Gcaud1921.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:12991..13575- (Gracilaria caudata M_176_S67 male)
ATGTCACTCACGCGAGAGAGATTAGATGGTGCCGATGAATACCTCAAAAT
GGACTGGGATGTGATTCACATTTTCAATCACACCAAATCAATAATCACGC
TTCCATCCTCAAAGACGACATTAACATCCAACGAAGCAGAGTAAGTTTAT
CGGACAGGTATCTTTTCCCATGCTCCTTTCGGCGAACAATGAAACATTCC
CAGTGTTCCACATGTGATTGATTCCATTCTGACAGTTTCCACAACCTGAT
CAACAAGAGCGCTTCCTCTACTCTTCAATTCCCGAGAATACGCGCTCAGA
GCGGGAATCGTGCTGAACTCTGAGAGCTTTGATGTCCATCAGTGGGAATC
TACGAAAGGCGTGGATCTGGTGTACGGCAGACGGGGGGACGCAGTCTCAG
GCGAGGGGGCTTGTGCGTTTCGATTCAAAACAAGTGATTATCCTGAAGTA
CACGGTGCCATAACGTACTCTTTTCCGTCGCTTTCTACAAATGCTGTCAC
AAAGCTTATATCATTCTTGAACGACTTACCAAACAAACTTGAGTCCTTGC
GGAAGACAGATTCCTCAATCTCAGAAGCAACTTAA
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Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:12991..13575-

>Gcaud1921.t1 ID=Gcaud1921.t1|Name=Gcaud1921.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=468bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:12991..13575- (Gracilaria caudata M_176_S67 male)
ATGTCACTCACGCGAGAGAGATTAGATGGTGCCGATGAATACCTCAAAAT
GGACTGGGATGTGATTCACATTTTCAATCACACCAAATCAATAATCACGC
TTCCATCCTCAAAGACGACATTAACATCCAACGAAGCAGAAGCGCTTCCT
CTACTCTTCAATTCCCGAGAATACGCGCTCAGAGCGGGAATCGTGCTGAA
CTCTGAGAGCTTTGATGTCCATCAGTGGGAATCTACGAAAGGCGTGGATC
TGGTGTACGGCAGACGGGGGGACGCAGTCTCAGGCGAGGGGGCTTGTGCG
TTTCGATTCAAAACAAGTGATTATCCTGAAGTACACGGTGCCATAACGTA
CTCTTTTCCGTCGCTTTCTACAAATGCTGTCACAAAGCTTATATCATTCT
TGAACGACTTACCAAACAAACTTGAGTCCTTGCGGAAGACAGATTCCTCA
ATCTCAGAAGCAACTTAA
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