Gcaud1928.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1928.t1
Unique NameGcaud1928.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Homology
BLAST of Gcaud1928.t1 vs. uniprot
Match: A0A2V3IPT7_9FLOR (Shikimate kinase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPT7_9FLOR)

HSP 1 Score: 283 bits (723), Expect = 2.530e-93
Identity = 147/203 (72.41%), Postives = 167/203 (82.27%), Query Frame = 0
Query:    1 MCEGIKDSGEQK--SEPRIQKDVSREVKELKSVLKKCSIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLRERIRDILEERRHLYKQADVTP-IHPALALSTQGSYRIKAL 200
            MCE   DS +++  ++PR  K+VS EVKELKSVLKKCSIYL+GPMG+GKS +GKY+ASEL F FLDTDELIE  A +SIPEIFE+DGEEAFRDLESA+LDQ+AAFIGC VATGGGAVLRK NWGKL+ GIVVYLETPVDVL DRLQ DT RPLLKN DG TLRERIRDILEERRHLY QAD+T  I  ++ +   G   I+ L
Sbjct:   47 MCESSTDSSQEQEAAQPRYTKEVSLEVKELKSVLKKCSIYLIGPMGSGKSVIGKYMASELGFCFLDTDELIEAAAKRSIPEIFETDGEEAFRDLESAVLDQLAAFIGCCVATGGGAVLRKSNWGKLRCGIVVYLETPVDVLRDRLQGDTTRPLLKNADGETLRERIRDILEERRHLYMQADLTVHIEKSMPVDDAGKEVIRKL 249          
BLAST of Gcaud1928.t1 vs. uniprot
Match: UPI001E1D3686 (shikimate kinase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3686)

HSP 1 Score: 177 bits (449), Expect = 1.770e-52
Identity = 95/162 (58.64%), Postives = 115/162 (70.99%), Query Frame = 0
Query:   21 VSREVKELKSVLKKCSIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLR-ERIRDILEERRHLYKQADVT 181
            +S E KEL+S+LKKC IY VG MG+GKSAV KY+A E+ +RFLDTDELIE VA +SI EIF  +GEE+FRDLESA+LDQV A  G  VATGGGAVLR  NW  +Q+GIVV+L  PV+ L  RL  D  RP+L        R +R+  IL+ R+  Y  ADVT
Sbjct:   11 LSPEAKELRSLLKKCPIYFVGCMGSGKSAVAKYVALEIGYRFLDTDELIELVANQSISEIFRVEGEESFRDLESAVLDQVHALTGVCVATGGGAVLRNSNWAHMQSGIVVWLNVPVETLAKRLADDATRPVLGRLSTFEERTQRLSAILDSRKVRYALADVT 172          
BLAST of Gcaud1928.t1 vs. uniprot
Match: UPI0018827B83 (shikimate kinase n=1 Tax=Cyanobacterium stanieri TaxID=102235 RepID=UPI0018827B83)

HSP 1 Score: 172 bits (436), Expect = 4.800e-51
Identity = 82/154 (53.25%), Postives = 121/154 (78.57%), Query Frame = 0
Query:   28 LKSVLKKCSIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLRERIRDILEERRHLYKQADVT 181
            +  +L+  +IYL+G MG+GKS VGK+LA +L +RFLDTD  IE ++ K+I +IFE DGE AFR LE+ +L +V++++  V++TGGG VL+K+NW  L+ G+V++L+ PVDVL DRL++D  RPLLK+TD   L +++R+ILEER+ LY+QAD+T
Sbjct:    1 MNKLLRGLNIYLIGMMGSGKSTVGKFLAHKLEYRFLDTDNTIEMLSQKTINKIFEEDGENAFRTLENQVLGEVSSYLHTVISTGGGIVLKKDNWAHLRDGMVIWLDVPVDVLVDRLKNDHTRPLLKDTD---LTQKLRNILEERKSLYQQADIT 151          
BLAST of Gcaud1928.t1 vs. uniprot
Match: A0A1E5QZK9_9CHRO (Shikimate kinase n=2 Tax=unclassified Cyanobacterium TaxID=2629879 RepID=A0A1E5QZK9_9CHRO)

HSP 1 Score: 169 bits (428), Expect = 7.790e-50
Identity = 81/151 (53.64%), Postives = 116/151 (76.82%), Query Frame = 0
Query:   31 VLKKCSIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLRERIRDILEERRHLYKQADVT 181
            +L+  +IYL+G MG+GK+ VGK+LA +L +RFLDTD  IE VA KSI +IFE DGE+ FR LE+ +L +V++++  V++TGGG VL+ +NW  L+ G+V++L+ PVD L DRLQ D  RPLLK TD   L+E++ +ILE+R+ LY+QAD+T
Sbjct:    4 LLRGLNIYLIGMMGSGKTTVGKFLAHKLEYRFLDTDNTIEVVAQKSINKIFEEDGEDVFRTLENRVLGEVSSYLHTVISTGGGIVLKSDNWAHLRDGMVIWLDVPVDTLVDRLQHDNTRPLLKETD---LKEKLSNILEQRKSLYQQADIT 151          
BLAST of Gcaud1928.t1 vs. uniprot
Match: K9YK29_CYASC (Shikimate kinase n=1 Tax=Cyanobacterium stanieri (strain ATCC 29140 / PCC 7202) TaxID=292563 RepID=K9YK29_CYASC)

HSP 1 Score: 169 bits (427), Expect = 1.100e-49
Identity = 81/151 (53.64%), Postives = 115/151 (76.16%), Query Frame = 0
Query:   31 VLKKCSIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLRERIRDILEERRHLYKQADVT 181
            +L+  ++YL+G MG+GKS VGK+LA +L++RFLDTD  IE +  KSI +IFE DGEE FR LE+ +L QV++++  V++TGGG VL+K+NW  L+ G+V++L+ PVDVL  RL+ D  RPLLK TD   L+E++  IL +R+HLY QAD+T
Sbjct:    4 LLRGLNVYLIGMMGSGKSTVGKFLAHKLAYRFLDTDNTIETLTQKSINKIFEEDGEEVFRTLENQVLAQVSSYLHTVISTGGGIVLKKDNWAHLRDGMVIWLDVPVDVLVQRLKDDRSRPLLKETD---LQEKLTTILAQRKHLYAQADLT 151          
BLAST of Gcaud1928.t1 vs. uniprot
Match: UPI001F550563 (shikimate kinase n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=UPI001F550563)

HSP 1 Score: 162 bits (411), Expect = 7.570e-47
Identity = 83/154 (53.90%), Postives = 113/154 (73.38%), Query Frame = 0
Query:   27 ELKSVLKKCSIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLRERIRDILEERRHLYKQADV 180
            +L + LK  +I+LVG MG+GK+ VG++LA  L++RF+DTD L+EQVA K I EIF   GE+AFR LE+ +L +VA++   VVATGGG VL ++NW  L  G+VV+L+ PV+ L  RLQ+DT RPLLK+ D   L+ ++  +LEERR LY QADV
Sbjct:   32 DLAARLKGTNIFLVGMMGSGKTTVGQFLAKNLNYRFIDTDSLVEQVAQKPINEIFAESGEDAFRQLETQVLSEVASYSRMVVATGGGIVLARQNWSFLHHGLVVWLDVPVEHLCRRLQADTSRPLLKDVD---LKNKLEKLLEERRSLYSQADV 182          
BLAST of Gcaud1928.t1 vs. uniprot
Match: A0A6I5PA90_9CYAN (Shikimate kinase n=1 Tax=Leptolyngbya sp. SIO3F4 TaxID=2607780 RepID=A0A6I5PA90_9CYAN)

HSP 1 Score: 160 bits (404), Expect = 3.720e-46
Identity = 78/153 (50.98%), Postives = 110/153 (71.90%), Query Frame = 0
Query:   32 LKKCSIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLRERIRDILEERRHLYKQADVTPIH 184
            LK  +IYLVG MG+GKS +GKYLA  L++RF+DTD++I Q   +SI +IF   GE AFRD+E+ +L QVA +   V+ATGGG V+++ENW  LQ+G+VV++  P+D L  RL  D  RPLLK  D   LR+++  +LE+RR+ Y QAD+T ++
Sbjct:    6 LKGTNIYLVGMMGSGKSTLGKYLAHTLNYRFIDTDDVIVQATGQSINDIFAEQGEAAFRDIETQVLAQVAPYTNTVIATGGGIVIKQENWSHLQSGLVVWINVPIDELIARLSQDQSRPLLKEGD---LRDKLTTLLEQRRNRYAQADITVVY 155          
BLAST of Gcaud1928.t1 vs. uniprot
Match: A0A2W6ZWR1_9CYAN (Shikimate kinase n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A2W6ZWR1_9CYAN)

HSP 1 Score: 160 bits (404), Expect = 3.960e-46
Identity = 81/146 (55.48%), Postives = 110/146 (75.34%), Query Frame = 0
Query:   36 SIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSD-TGRPLLKNTDGITLRERIRDILEERRHLYKQADV 180
            ++YLVG MG GKSAVG+ LA  L +RF+D D ++EQ A ++IPE+FE++GE+ FRDLESA+L ++A++   VVATGGG VLR ENWG+LQ G+VV+L+ P  VL +RL+SD T RPL+   D     ER+R +LE+RR LY  AD+
Sbjct:   21 NLYLVGMMGAGKSAVGRPLADGLGYRFIDADRVLEQTAAQTIPELFETEGEQGFRDLESAVLARIASWHSLVVATGGGVVLRSENWGRLQQGLVVWLDAPESVLLERLRSDPTPRPLISGPDPA---ERLRVLLEQRRPLYGLADL 163          
BLAST of Gcaud1928.t1 vs. uniprot
Match: K9Z4T0_CYAAP (Shikimate kinase n=4 Tax=Cyanobacterium TaxID=102234 RepID=K9Z4T0_CYAAP)

HSP 1 Score: 159 bits (402), Expect = 6.410e-46
Identity = 77/154 (50.00%), Postives = 112/154 (72.73%), Query Frame = 0
Query:   28 LKSVLKKCSIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLRERIRDILEERRHLYKQADVT 181
            +K +LK  +IYL+G MG+GK+ VG+ LA EL +RFLDTD +I  V+ KSI +IF  DGE+ FR LES +L +V+A++  V+ATGGG +LR++NW  L+ G+VV+L  P+DVL  RL+ D  RPLLK  +   L+ ++  + E+R+ LY+QAD+T
Sbjct:    1 MKELLKGLNIYLIGMMGSGKTTVGELLAKELEYRFLDTDAIISAVSEKSINQIFAEDGEDEFRQLESDVLQEVSAYLYTVIATGGGIILRQQNWSHLRDGMVVWLNVPIDVLVQRLKDDDTRPLLKREE---LQTKLTSLYEQRKSLYQQADIT 151          
BLAST of Gcaud1928.t1 vs. uniprot
Match: UPI001E29D8F6 (shikimate kinase n=1 Tax=[Phormidium] sp. ETS-05 TaxID=222819 RepID=UPI001E29D8F6)

HSP 1 Score: 159 bits (402), Expect = 6.820e-46
Identity = 81/145 (55.86%), Postives = 103/145 (71.03%), Query Frame = 0
Query:   36 SIYLVGPMGTGKSAVGKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQVAAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKNTDGITLRERIRDILEERRHLYKQADV 180
            ++YLVG MG GKS VG+ LA EL +RF DTD LI Q+A KSI EIF   GE+ FR+LE+ +L Q+ A+   VVATGGG VLR+ENW  L  GIVV+L+ P+DVL  RLQ D  RPLL++ D      ++R +L++R HLY QADV
Sbjct:    9 NLYLVGIMGAGKSTVGRILARELGYRFFDTDNLIAQIAGKSITEIFAEAGEDGFRELETKVLSQLCAYKNLVVATGGGMVLRRENWSYLHHGIVVWLDVPLDVLQTRLQGDATRPLLQDPDPWG---KLRSLLDQRLHLYAQADV 150          
The following BLAST results are available for this feature:
BLAST of Gcaud1928.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPT7_9FLOR2.530e-9372.41Shikimate kinase n=1 Tax=Gracilariopsis chorda Tax... [more]
UPI001E1D36861.770e-5258.64shikimate kinase-like n=1 Tax=Mercenaria mercenari... [more]
UPI0018827B834.800e-5153.25shikimate kinase n=1 Tax=Cyanobacterium stanieri T... [more]
A0A1E5QZK9_9CHRO7.790e-5053.64Shikimate kinase n=2 Tax=unclassified Cyanobacteri... [more]
K9YK29_CYASC1.100e-4953.64Shikimate kinase n=1 Tax=Cyanobacterium stanieri (... [more]
UPI001F5505637.570e-4753.90shikimate kinase n=2 Tax=unclassified Leptolyngbya... [more]
A0A6I5PA90_9CYAN3.720e-4650.98Shikimate kinase n=1 Tax=Leptolyngbya sp. SIO3F4 T... [more]
A0A2W6ZWR1_9CYAN3.960e-4655.48Shikimate kinase n=1 Tax=Cyanobium sp. TaxID=21641... [more]
K9Z4T0_CYAAP6.410e-4650.00Shikimate kinase n=4 Tax=Cyanobacterium TaxID=1022... [more]
UPI001E29D8F66.820e-4655.86shikimate kinase n=1 Tax=[Phormidium] sp. ETS-05 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01100SHIKIMTKNASEcoord: 127..144
score: 39.74
coord: 107..116
score: 64.62
coord: 61..74
score: 40.11
coord: 89..97
score: 47.86
coord: 37..52
score: 53.37
NoneNo IPR availablePANTHERPTHR21087:SF16SHIKIMATE KINASE 1, CHLOROPLASTICcoord: 19..181
NoneNo IPR availablePANTHERPTHR21087SHIKIMATE KINASEcoord: 19..181
IPR031322Shikimate kinase/gluconokinasePFAMPF01202SKIcoord: 43..182
e-value: 8.7E-44
score: 149.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 19..201
e-value: 5.2E-54
score: 185.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 36..179
IPR023000Shikimate kinase, conserved sitePROSITEPS01128SHIKIMATE_KINASEcoord: 90..115
IPR000623Shikimate kinase/Threonine synthase-like 1HAMAPMF_00109Shikimate_kinasecoord: 34..201
score: 25.464066
IPR000623Shikimate kinase/Threonine synthase-like 1CDDcd00464SKcoord: 36..181
e-value: 2.24766E-59
score: 181.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:23690..24549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1928.t1Gcaud1928.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 23690..24549 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1928.t1 ID=Gcaud1928.t1|Name=Gcaud1928.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MCEGIKDSGEQKSEPRIQKDVSREVKELKSVLKKCSIYLVGPMGTGKSAV
GKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQV
AAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRP
LLKNTDGITLRERIRDILEERRHLYKQADVTPIHPALALSTQGSYRIKAL
DIKITRTADQRARV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031322Shikimate/glucono_kinase
IPR027417P-loop_NTPase
IPR023000Shikimate_kinase_CS
IPR000623Shikimate_kinase/TSH1