Gcaud1928.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1928.t1
Unique NameGcaud1928.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:23690..24549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog292563.Cyast_1341
Preferred namearoK
PFAMsSKI
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00002,RC00078
KEGG koko:K00891
KEGG ReactionR02412
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615
Evalue4.39e-49
EggNOG OGsCOG0703@1|root,COG0703@2|Bacteria,1G5QW@1117|Cyanobacteria
EC2.7.1.71
DescriptionCatalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1928Gcaud1928Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 23690..24549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1928.t1Gcaud1928.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 23690..24549 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1928.t1.start1Gcaud1928.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 23690..23692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1928.t1.CDS1Gcaud1928.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 23690..24232 +
Gcaud1928.t1.CDS2Gcaud1928.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 24309..24405 +
Gcaud1928.t1.CDS3Gcaud1928.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 24545..24549 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1928.t1.exon1Gcaud1928.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 23690..24232 +
Gcaud1928.t1.exon2Gcaud1928.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 24309..24405 +
Gcaud1928.t1.exon3Gcaud1928.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 24545..24549 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1928.t1.intron1Gcaud1928.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 24233..24308 +
Gcaud1928.t1.intron2Gcaud1928.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 24406..24544 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1928.t1.stop1Gcaud1928.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 24547..24549 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1928.t1 ID=Gcaud1928.t1|Name=Gcaud1928.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MCEGIKDSGEQKSEPRIQKDVSREVKELKSVLKKCSIYLVGPMGTGKSAV
GKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQV
AAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRP
LLKNTDGITLRERIRDILEERRHLYKQADVTPIHPALALSTQGSYRIKAL
DIKITRTADQRARV*
back to top

spliced messenger RNA

>Gcaud1928.t1 ID=Gcaud1928.t1|Name=Gcaud1928.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:23690..24549+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAAGGTATCAAAGACTCAGGCGAGCAGAAGTCTGAACCTCGAAT
CCAAAAAGATGTATCACGAGAAGTGAAGGAACTGAAAAGTGTTTTGAAGA
AATGTTCCATATATCTGGTTGGTCCTATGGGCACTGGAAAGAGTGCTGTC
GGAAAGTACCTAGCAAGCGAGCTTAGTTTTCGTTTCCTCGACACAGACGA
ACTTATCGAGCAAGTGGCGACGAAATCTATACCCGAAATATTTGAGAGCG
ACGGCGAAGAAGCCTTTCGTGACCTCGAATCAGCAATTCTGGACCAGGTG
GCCGCATTCATTGGGTGTGTCGTTGCCACAGGAGGCGGAGCAGTCCTGAG
AAAAGAGAATTGGGGGAAACTACAAACCGGAATAGTGGTGTACCTTGAAA
CACCAGTCGATGTGCTGAACGATCGCCTACAGAGTGATACAGGGCGGCCC
CTCTTGAAGAATACCGATGGTATCACGCTGCGAGAGCGCATCAGAGACAT
ACTGGAAGAGAGGCGGCATTTGTACAAACAAGCAGACGTTACGCCAATCC
ACCCCGCACTAGCGCTCTCTACCCAGGGAAGCTACCGGATAAAGGCTCTT
GATATCAAGATCACTCGCACTGCCGACCAACGTGCAAGAGTTTGA
back to top

protein sequence of Gcaud1928.t1

>Gcaud1928.t1 ID=Gcaud1928.t1|Name=Gcaud1928.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MCEGIKDSGEQKSEPRIQKDVSREVKELKSVLKKCSIYLVGPMGTGKSAV
GKYLASELSFRFLDTDELIEQVATKSIPEIFESDGEEAFRDLESAILDQV
AAFIGCVVATGGGAVLRKENWGKLQTGIVVYLETPVDVLNDRLQSDTGRP
LLKNTDGITLRERIRDILEERRHLYKQADVTPIHPALALSTQGSYRIKAL
DIKITRTADQRARV*
back to top

mRNA from alignment at NODE_105_length_50300_cov_4.471768:23690..24549+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1928.t1 ID=Gcaud1928.t1|Name=Gcaud1928.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=860bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:23690..24549+ (Gracilaria caudata M_176_S67 male)
ATGTGCGAAGGTATCAAAGACTCAGGCGAGCAGAAGTCTGAACCTCGAAT
CCAAAAAGATGTATCACGAGAAGTGAAGGAACTGAAAAGTGTTTTGAAGA
AATGTTCCATATATCTGGTTGGTCCTATGGGCACTGGAAAGAGTGCTGTC
GGAAAGTACCTAGCAAGCGAGCTTAGTTTTCGTTTCCTCGACACAGACGA
ACTTATCGAGCAAGTGGCGACGAAATCTATACCCGAAATATTTGAGAGCG
ACGGCGAAGAAGCCTTTCGTGACCTCGAATCAGCAATTCTGGACCAGGTG
GCCGCATTCATTGGGTGTGTCGTTGCCACAGGAGGCGGAGCAGTCCTGAG
AAAAGAGAATTGGGGGAAACTACAAACCGGAATAGTGGTGTACCTTGAAA
CACCAGTCGATGTGCTGAACGATCGCCTACAGAGTGATACAGGGCGGCCC
CTCTTGAAGAATACCGATGGTATCACGCTGCGAGAGCGCATCAGAGACAT
ACTGGAAGAGAGGCGGCATTTGTACAAACAAGCAGACGTTACGGTACGAA
TTAAGAAGGACATGCCAGTGGACGACGTAGGTAAGGAGGTCATTCGAATT
TTAACAAACTTCATCAAAGCCAATCCACCCCGCACTAGCGCTCTCTACCC
AGGGAAGCTACCGGATAAAGGCTCTTGATATCAAGATCACTCGCACTGCC
GACCAACGTGCAAGAGGTACGGATAGAATCTTCCCCGAATAGAGAGCTTC
ACAGAGAACCTACTATCCTTCTTGTGCAAAGGAAGGGGTTGTTCTTTTCA
GTGGTGTAGGTCTCACTTGCTAGGGGCTAACGGTCTGGCTACCCTACAAA
TATAGTTTGA
back to top

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:23690..24549+

>Gcaud1928.t1 ID=Gcaud1928.t1|Name=Gcaud1928.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:23690..24549+ (Gracilaria caudata M_176_S67 male)
ATGTGCGAAGGTATCAAAGACTCAGGCGAGCAGAAGTCTGAACCTCGAAT
CCAAAAAGATGTATCACGAGAAGTGAAGGAACTGAAAAGTGTTTTGAAGA
AATGTTCCATATATCTGGTTGGTCCTATGGGCACTGGAAAGAGTGCTGTC
GGAAAGTACCTAGCAAGCGAGCTTAGTTTTCGTTTCCTCGACACAGACGA
ACTTATCGAGCAAGTGGCGACGAAATCTATACCCGAAATATTTGAGAGCG
ACGGCGAAGAAGCCTTTCGTGACCTCGAATCAGCAATTCTGGACCAGGTG
GCCGCATTCATTGGGTGTGTCGTTGCCACAGGAGGCGGAGCAGTCCTGAG
AAAAGAGAATTGGGGGAAACTACAAACCGGAATAGTGGTGTACCTTGAAA
CACCAGTCGATGTGCTGAACGATCGCCTACAGAGTGATACAGGGCGGCCC
CTCTTGAAGAATACCGATGGTATCACGCTGCGAGAGCGCATCAGAGACAT
ACTGGAAGAGAGGCGGCATTTGTACAAACAAGCAGACGTTACGCCAATCC
ACCCCGCACTAGCGCTCTCTACCCAGGGAAGCTACCGGATAAAGGCTCTT
GATATCAAGATCACTCGCACTGCCGACCAACGTGCAAGAGTTTGA
back to top