Gcaud9177.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9177.t1
Unique NameGcaud9177.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1928_length_7623_cov_4.225438contigNODE_1928_length_7623_cov_4.225438:3985..5525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1280696.ATVY01000008_gene1962
Preferred namegalU
PFAMsNTP_transferase
Max annot lvl186801|Clostridia
KEGG rclassRC00002
KEGG koko:K00963
KEGG ReactionR00289
KEGG Pathwayko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130
KEGG ModuleM00129,M00361,M00362,M00549
Evalue9.99e-95
EggNOG OGsCOG0153@1|root,COG1210@1|root,COG0153@2|Bacteria,COG1210@2|Bacteria,1TQ24@1239|Firmicutes,25E5A@186801|Clostridia,4C0WH@830|Butyrivibrio
EC2.7.7.9
DescriptionGHMP kinases N terminal domain
COG categoryGM
BiGG ReactioniHN637.CLJU_RS02205
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9177Gcaud9177Gracilaria caudata M_176_S67 malegeneNODE_1928_length_7623_cov_4.225438 3985..5525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9177.t1Gcaud9177.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1928_length_7623_cov_4.225438 3985..5525 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9177.t1.start1Gcaud9177.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1928_length_7623_cov_4.225438 3985..3987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9177.t1.CDS1Gcaud9177.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1928_length_7623_cov_4.225438 3985..4897 +
Gcaud9177.t1.CDS2Gcaud9177.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1928_length_7623_cov_4.225438 5003..5380 +
Gcaud9177.t1.CDS3Gcaud9177.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1928_length_7623_cov_4.225438 5515..5525 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9177.t1.exon1Gcaud9177.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1928_length_7623_cov_4.225438 3985..4897 +
Gcaud9177.t1.exon2Gcaud9177.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1928_length_7623_cov_4.225438 5003..5380 +
Gcaud9177.t1.exon3Gcaud9177.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1928_length_7623_cov_4.225438 5515..5525 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9177.t1.intron1Gcaud9177.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1928_length_7623_cov_4.225438 4898..5002 +
Gcaud9177.t1.intron2Gcaud9177.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1928_length_7623_cov_4.225438 5381..5514 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9177.t1.stop1Gcaud9177.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1928_length_7623_cov_4.225438 5523..5525 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9177.t1 ID=Gcaud9177.t1|Name=Gcaud9177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=434bp
MMTTYDLFIPGRLCLAGEHSDWAASYRQVSPHATVGSALVIALNQGLQAK
VSRSSCLSLSSRLASTLAVPIEKLLDVAQSDSSWRYAAAVSYIIHNRFVI
PDAVCIQIVREALPPRKGLSSSAAICVLVARAYNVVYGLSLTEAGEMEIA
YQGERLTGSACGRMDQIVAIGPGRAAHMTFDGEHVSHKVLPNPKTPIYIA
VAQVGTKDTSSILRGLHGAYPNADTEEKIRLQQALGAKNLSMIQKFNQAI
GDGDAQALGQLMTKAQAIFDDAAIPFCPEQLTAPNLHRILQDADILPLVY
GGKGVGSQGDGTVQFVAKSKEASQHLLAVLSDKLKTDPFVVTIGNPKPTD
AEIMPIACPQRQLSKKRKLHTAVIPAAGFGTRLYPASKSIRPKALFPIID
ADGFAKPLLLHLVEQCARAHMERIIIIVSPVDS*
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spliced messenger RNA

>Gcaud9177.t1 ID=Gcaud9177.t1|Name=Gcaud9177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at NODE_1928_length_7623_cov_4.225438:3985..5525+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGACTACCTACGATCTCTTCATCCCAGGGCGTCTCTGCCTGGCTGG
CGAGCATTCCGACTGGGCGGCGTCGTACCGACAAGTCTCTCCTCACGCCA
CGGTCGGTTCCGCTCTCGTCATTGCTCTCAACCAAGGTCTGCAGGCCAAA
GTATCGCGTTCATCCTGTCTGTCACTCTCCTCCCGCTTAGCCTCCACTCT
CGCGGTCCCGATTGAAAAACTTCTCGATGTGGCACAGAGCGATTCTTCTT
GGAGGTATGCAGCAGCTGTTTCGTATATCATTCATAACCGTTTTGTCATC
CCGGATGCAGTTTGCATTCAAATTGTTCGAGAAGCATTACCACCGAGAAA
GGGATTGAGTTCTTCTGCGGCTATCTGTGTGCTTGTTGCACGTGCGTATA
ATGTCGTATACGGACTTTCTCTTACAGAGGCTGGAGAGATGGAGATTGCC
TATCAGGGTGAGCGTCTTACGGGAAGTGCATGTGGACGAATGGACCAAAT
CGTTGCGATAGGACCGGGTCGTGCGGCTCATATGACGTTCGATGGAGAGC
ATGTTTCCCACAAAGTGCTCCCAAATCCAAAGACTCCCATTTACATTGCA
GTTGCCCAAGTTGGTACAAAGGATACCTCTTCGATTCTGCGCGGTTTGCA
TGGAGCATATCCAAATGCGGATACAGAGGAGAAGATCCGATTACAACAAG
CGCTTGGTGCGAAGAATTTGAGCATGATACAGAAGTTTAACCAAGCTATA
GGTGATGGGGATGCACAAGCGTTGGGACAACTTATGACAAAGGCGCAAGC
CATCTTCGACGATGCTGCCATTCCCTTCTGTCCCGAACAACTCACTGCTC
CTAATCTGCACCGCATTCTACAAGACGCAGATATTCTACCTCTCGTTTAC
GGCGGTAAAGGAGTTGGAAGCCAGGGAGATGGCACGGTGCAATTTGTCGC
GAAGAGCAAAGAAGCATCCCAGCATTTGCTTGCGGTTCTATCAGACAAGT
TGAAGACAGATCCGTTCGTAGTAACCATAGGCAATCCCAAGCCTACTGAC
GCCGAGATCATGCCTATTGCATGCCCCCAACGACAATTATCGAAGAAAAG
AAAGCTGCACACAGCCGTCATCCCCGCCGCAGGATTTGGTACCCGGCTGT
ATCCAGCATCGAAAAGCATTCGTCCAAAGGCATTGTTCCCCATTATAGAT
GCCGACGGATTTGCAAAGCCACTGCTCCTTCACCTGGTTGAGCAATGTGC
TCGCGCACATATGGAGAGAATCATAATAATTGTTTCCCCGGTCGATTCCT
AG
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protein sequence of Gcaud9177.t1

>Gcaud9177.t1 ID=Gcaud9177.t1|Name=Gcaud9177.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=434bp
MMTTYDLFIPGRLCLAGEHSDWAASYRQVSPHATVGSALVIALNQGLQAK
VSRSSCLSLSSRLASTLAVPIEKLLDVAQSDSSWRYAAAVSYIIHNRFVI
PDAVCIQIVREALPPRKGLSSSAAICVLVARAYNVVYGLSLTEAGEMEIA
YQGERLTGSACGRMDQIVAIGPGRAAHMTFDGEHVSHKVLPNPKTPIYIA
VAQVGTKDTSSILRGLHGAYPNADTEEKIRLQQALGAKNLSMIQKFNQAI
GDGDAQALGQLMTKAQAIFDDAAIPFCPEQLTAPNLHRILQDADILPLVY
GGKGVGSQGDGTVQFVAKSKEASQHLLAVLSDKLKTDPFVVTIGNPKPTD
AEIMPIACPQRQLSKKRKLHTAVIPAAGFGTRLYPASKSIRPKALFPIID
ADGFAKPLLLHLVEQCARAHMERIIIIVSPVDS*
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mRNA from alignment at NODE_1928_length_7623_cov_4.225438:3985..5525+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9177.t1 ID=Gcaud9177.t1|Name=Gcaud9177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1541bp|location=Sequence derived from alignment at NODE_1928_length_7623_cov_4.225438:3985..5525+ (Gracilaria caudata M_176_S67 male)
ATGATGACTACCTACGATCTCTTCATCCCAGGGCGTCTCTGCCTGGCTGG
CGAGCATTCCGACTGGGCGGCGTCGTACCGACAAGTCTCTCCTCACGCCA
CGGTCGGTTCCGCTCTCGTCATTGCTCTCAACCAAGGTCTGCAGGCCAAA
GTATCGCGTTCATCCTGTCTGTCACTCTCCTCCCGCTTAGCCTCCACTCT
CGCGGTCCCGATTGAAAAACTTCTCGATGTGGCACAGAGCGATTCTTCTT
GGAGGTATGCAGCAGCTGTTTCGTATATCATTCATAACCGTTTTGTCATC
CCGGATGCAGTTTGCATTCAAATTGTTCGAGAAGCATTACCACCGAGAAA
GGGATTGAGTTCTTCTGCGGCTATCTGTGTGCTTGTTGCACGTGCGTATA
ATGTCGTATACGGACTTTCTCTTACAGAGGCTGGAGAGATGGAGATTGCC
TATCAGGGTGAGCGTCTTACGGGAAGTGCATGTGGACGAATGGACCAAAT
CGTTGCGATAGGACCGGGTCGTGCGGCTCATATGACGTTCGATGGAGAGC
ATGTTTCCCACAAAGTGCTCCCAAATCCAAAGACTCCCATTTACATTGCA
GTTGCCCAAGTTGGTACAAAGGATACCTCTTCGATTCTGCGCGGTTTGCA
TGGAGCATATCCAAATGCGGATACAGAGGAGAAGATCCGATTACAACAAG
CGCTTGGTGCGAAGAATTTGAGCATGATACAGAAGTTTAACCAAGCTATA
GGTGATGGGGATGCACAAGCGTTGGGACAACTTATGACAAAGGCGCAAGC
CATCTTCGACGATGCTGCCATTCCCTTCTGTCCCGAACAACTCACTGCTC
CTAATCTGCACCGCATTCTACAAGACGCAGATATTCTACCTCTCGTTTAC
GGCGGTAAAGGAGGTACGTTAGGCCCGTGTACATTTCTTTATAATCGTTG
ATGTAGATACTGTCTAACACGATTCATGCCCAACACAACTTCTGGCACTT
TCAATGCATCAATGCCAGTTGGAAGCCAGGGAGATGGCACGGTGCAATTT
GTCGCGAAGAGCAAAGAAGCATCCCAGCATTTGCTTGCGGTTCTATCAGA
CAAGTTGAAGACAGATCCGTTCGTAGTAACCATAGGCAATCCCAAGCCTA
CTGACGCCGAGATCATGCCTATTGCATGCCCCCAACGACAATTATCGAAG
AAAAGAAAGCTGCACACAGCCGTCATCCCCGCCGCAGGATTTGGTACCCG
GCTGTATCCAGCATCGAAAAGCATTCGTCCAAAGGCATTGTTCCCCATTA
TAGATGCCGACGGATTTGCAAAGCCACTGCTCCTTCACCTGGTTGAGCAA
TGTGCTCGCGCACATATGGAGAGAATCATAATAATTGTTTCCCCGGGTGA
GCAAGAAAACCGAGTTCGCGATGTTTTTAAGCCAGTTTCAAGCGAGCTGT
ACAAGGCGCTCAAACCACATATGCGGCAATATGCAGATCGTATAGTAAAT
CTTGGTAAACTCATCGAAATCGATACTCAGTCGATTCCTAG
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Coding sequence (CDS) from alignment at NODE_1928_length_7623_cov_4.225438:3985..5525+

>Gcaud9177.t1 ID=Gcaud9177.t1|Name=Gcaud9177.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1302bp|location=Sequence derived from alignment at NODE_1928_length_7623_cov_4.225438:3985..5525+ (Gracilaria caudata M_176_S67 male)
ATGATGACTACCTACGATCTCTTCATCCCAGGGCGTCTCTGCCTGGCTGG
CGAGCATTCCGACTGGGCGGCGTCGTACCGACAAGTCTCTCCTCACGCCA
CGGTCGGTTCCGCTCTCGTCATTGCTCTCAACCAAGGTCTGCAGGCCAAA
GTATCGCGTTCATCCTGTCTGTCACTCTCCTCCCGCTTAGCCTCCACTCT
CGCGGTCCCGATTGAAAAACTTCTCGATGTGGCACAGAGCGATTCTTCTT
GGAGGTATGCAGCAGCTGTTTCGTATATCATTCATAACCGTTTTGTCATC
CCGGATGCAGTTTGCATTCAAATTGTTCGAGAAGCATTACCACCGAGAAA
GGGATTGAGTTCTTCTGCGGCTATCTGTGTGCTTGTTGCACGTGCGTATA
ATGTCGTATACGGACTTTCTCTTACAGAGGCTGGAGAGATGGAGATTGCC
TATCAGGGTGAGCGTCTTACGGGAAGTGCATGTGGACGAATGGACCAAAT
CGTTGCGATAGGACCGGGTCGTGCGGCTCATATGACGTTCGATGGAGAGC
ATGTTTCCCACAAAGTGCTCCCAAATCCAAAGACTCCCATTTACATTGCA
GTTGCCCAAGTTGGTACAAAGGATACCTCTTCGATTCTGCGCGGTTTGCA
TGGAGCATATCCAAATGCGGATACAGAGGAGAAGATCCGATTACAACAAG
CGCTTGGTGCGAAGAATTTGAGCATGATACAGAAGTTTAACCAAGCTATA
GGTGATGGGGATGCACAAGCGTTGGGACAACTTATGACAAAGGCGCAAGC
CATCTTCGACGATGCTGCCATTCCCTTCTGTCCCGAACAACTCACTGCTC
CTAATCTGCACCGCATTCTACAAGACGCAGATATTCTACCTCTCGTTTAC
GGCGGTAAAGGAGTTGGAAGCCAGGGAGATGGCACGGTGCAATTTGTCGC
GAAGAGCAAAGAAGCATCCCAGCATTTGCTTGCGGTTCTATCAGACAAGT
TGAAGACAGATCCGTTCGTAGTAACCATAGGCAATCCCAAGCCTACTGAC
GCCGAGATCATGCCTATTGCATGCCCCCAACGACAATTATCGAAGAAAAG
AAAGCTGCACACAGCCGTCATCCCCGCCGCAGGATTTGGTACCCGGCTGT
ATCCAGCATCGAAAAGCATTCGTCCAAAGGCATTGTTCCCCATTATAGAT
GCCGACGGATTTGCAAAGCCACTGCTCCTTCACCTGGTTGAGCAATGTGC
TCGCGCACATATGGAGAGAATCATAATAATTGTTTCCCCGGTCGATTCCT
AG
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