Gcaud7735.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7735.t1
Unique NameGcaud7735.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1915_length_7679_cov_4.178044contigNODE_1915_length_7679_cov_4.178044:98..759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7735Gcaud7735Gracilaria caudata M_176_S67 malegeneNODE_1915_length_7679_cov_4.178044 98..759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7735.t1.CDS1Gcaud7735.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1915_length_7679_cov_4.178044 98..759 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7735.t1.exon1Gcaud7735.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1915_length_7679_cov_4.178044 98..759 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7735.t1.stop1Gcaud7735.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1915_length_7679_cov_4.178044 757..759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7735.t1Gcaud7735.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1915_length_7679_cov_4.178044 98..759 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7735.t1 ID=Gcaud7735.t1|Name=Gcaud7735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=221bp
XVTRGFSVPQNEPASSVPPEVQAELKRLTRRFLVRKNQLVYRSYVGRVLA
FVSVSSLYIIGTLAGYVEADHTAVQEANTFTEYKLIGIVLTFNANISVLL
FTVFSVLFGIDIELFLLGGRHVRDSEMDVIEEKLFKPLRDIILRYPVRVD
LVNAATAHFAVLRQSEDGLCIGSVTVGQFKAVRGRSFGFRSVGPGSWIPV
DRKDISAFDEASVPEQDLIF*
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spliced messenger RNA

>Gcaud7735.t1 ID=Gcaud7735.t1|Name=Gcaud7735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=662bp|location=Sequence derived from alignment at NODE_1915_length_7679_cov_4.178044:98..759+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GTGTCACACGCGGCTTCAGCGTTCCGCAAAATGAGCCCGCATCTTCCGTG
CCTCCTGAGGTACAAGCAGAGCTTAAGCGGCTAACGCGTCGCTTCCTCGT
GCGAAAGAACCAACTCGTGTACCGCAGTTATGTCGGACGGGTGCTCGCCT
TTGTCTCTGTATCCAGTCTGTACATCATCGGCACGCTGGCTGGGTACGTC
GAGGCTGACCACACTGCTGTTCAAGAAGCAAACACTTTCACCGAATATAA
GCTGATCGGAATTGTGCTTACTTTCAATGCTAACATCAGTGTGCTGCTGT
TCACCGTATTCTCAGTTCTATTTGGTATCGACATCGAGCTTTTTCTGCTT
GGCGGACGTCATGTGCGCGACTCGGAGATGGATGTGATAGAAGAAAAACT
GTTCAAGCCATTACGCGATATTATTCTTCGCTACCCCGTTCGCGTCGATC
TGGTCAATGCTGCTACCGCACATTTTGCCGTTTTACGACAGTCGGAAGAT
GGTTTGTGTATTGGGAGCGTAACGGTAGGTCAATTCAAGGCAGTTCGGGG
GAGATCTTTTGGGTTCCGATCTGTCGGTCCTGGATCCTGGATTCCGGTTG
ACCGTAAGGATATCTCTGCCTTTGATGAGGCATCTGTGCCAGAACAAGAC
CTCATTTTCTAA
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protein sequence of Gcaud7735.t1

>Gcaud7735.t1 ID=Gcaud7735.t1|Name=Gcaud7735.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=221bp
XVTRGFSVPQNEPASSVPPEVQAELKRLTRRFLVRKNQLVYRSYVGRVLA
FVSVSSLYIIGTLAGYVEADHTAVQEANTFTEYKLIGIVLTFNANISVLL
FTVFSVLFGIDIELFLLGGRHVRDSEMDVIEEKLFKPLRDIILRYPVRVD
LVNAATAHFAVLRQSEDGLCIGSVTVGQFKAVRGRSFGFRSVGPGSWIPV
DRKDISAFDEASVPEQDLIF*
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mRNA from alignment at NODE_1915_length_7679_cov_4.178044:98..759+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7735.t1 ID=Gcaud7735.t1|Name=Gcaud7735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=662bp|location=Sequence derived from alignment at NODE_1915_length_7679_cov_4.178044:98..759+ (Gracilaria caudata M_176_S67 male)
GTGTCACACGCGGCTTCAGCGTTCCGCAAAATGAGCCCGCATCTTCCGTG
CCTCCTGAGGTACAAGCAGAGCTTAAGCGGCTAACGCGTCGCTTCCTCGT
GCGAAAGAACCAACTCGTGTACCGCAGTTATGTCGGACGGGTGCTCGCCT
TTGTCTCTGTATCCAGTCTGTACATCATCGGCACGCTGGCTGGGTACGTC
GAGGCTGACCACACTGCTGTTCAAGAAGCAAACACTTTCACCGAATATAA
GCTGATCGGAATTGTGCTTACTTTCAATGCTAACATCAGTGTGCTGCTGT
TCACCGTATTCTCAGTTCTATTTGGTATCGACATCGAGCTTTTTCTGCTT
GGCGGACGTCATGTGCGCGACTCGGAGATGGATGTGATAGAAGAAAAACT
GTTCAAGCCATTACGCGATATTATTCTTCGCTACCCCGTTCGCGTCGATC
TGGTCAATGCTGCTACCGCACATTTTGCCGTTTTACGACAGTCGGAAGAT
GGTTTGTGTATTGGGAGCGTAACGGTAGGTCAATTCAAGGCAGTTCGGGG
GAGATCTTTTGGGTTCCGATCTGTCGGTCCTGGATCCTGGATTCCGGTTG
ACCGTAAGGATATCTCTGCCTTTGATGAGGCATCTGTGCCAGAACAAGAC
CTCATTTTCTAA
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Coding sequence (CDS) from alignment at NODE_1915_length_7679_cov_4.178044:98..759+

>Gcaud7735.t1 ID=Gcaud7735.t1|Name=Gcaud7735.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=662bp|location=Sequence derived from alignment at NODE_1915_length_7679_cov_4.178044:98..759+ (Gracilaria caudata M_176_S67 male)
GTGTCACACGCGGCTTCAGCGTTCCGCAAAATGAGCCCGCATCTTCCGTG
CCTCCTGAGGTACAAGCAGAGCTTAAGCGGCTAACGCGTCGCTTCCTCGT
GCGAAAGAACCAACTCGTGTACCGCAGTTATGTCGGACGGGTGCTCGCCT
TTGTCTCTGTATCCAGTCTGTACATCATCGGCACGCTGGCTGGGTACGTC
GAGGCTGACCACACTGCTGTTCAAGAAGCAAACACTTTCACCGAATATAA
GCTGATCGGAATTGTGCTTACTTTCAATGCTAACATCAGTGTGCTGCTGT
TCACCGTATTCTCAGTTCTATTTGGTATCGACATCGAGCTTTTTCTGCTT
GGCGGACGTCATGTGCGCGACTCGGAGATGGATGTGATAGAAGAAAAACT
GTTCAAGCCATTACGCGATATTATTCTTCGCTACCCCGTTCGCGTCGATC
TGGTCAATGCTGCTACCGCACATTTTGCCGTTTTACGACAGTCGGAAGAT
GGTTTGTGTATTGGGAGCGTAACGGTAGGTCAATTCAAGGCAGTTCGGGG
GAGATCTTTTGGGTTCCGATCTGTCGGTCCTGGATCCTGGATTCCGGTTG
ACCGTAAGGATATCTCTGCCTTTGATGAGGCATCTGTGCCAGAACAAGAC
CTCATTTTCTAA
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