Gcaud1866.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1866.t1
Unique NameGcaud1866.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length260
Homology
BLAST of Gcaud1866.t1 vs. uniprot
Match: A0A2V3IKS1_9FLOR (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKS1_9FLOR)

HSP 1 Score: 305 bits (782), Expect = 7.120e-102
Identity = 160/259 (61.78%), Postives = 196/259 (75.68%), Query Frame = 0
Query:    1 MSQPTSKPQQVSQFPLPPRRYYQSIATQPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPSAPPCDELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEAADEVTQPSYQLSQAATTYLQSLQXXXXXXXXXXXXXXTTHAHLSQPIPHAANNSTLVFDDMMPALFTPPKRSTSQLMRDIDNIVNDPNL 259
            M+  ++KPQQVSQFPLPPRRYYQSI+TQP+HPP    +N SY MFGR+Y+T+ +LP+LE +GRKR+YDP+  PC ELR LN SLL+LFL LV QLC P+T ESP  PHK II +IEDTF+NMQHLINTMRPAQAAMDLK LLDNQTASRK+ T+NLK+SVK AWDLIA+AAD+++QPSYQLS+ ATTY+Q LQ               TH H    + H    STL FDD+MPA   PPK   ++L+++I +I+N P L
Sbjct:    1 MAHQSAKPQQVSQFPLPPRRYYQSISTQPLHPPXXXXANHSYSMFGRVYTTDDVLPTLEHAGRKRLYDPAGSPCSELRTLNNSLLELFLNLVDQLCDPLTHESPSDPHKQIIDRIEDTFINMQHLINTMRPAQAAMDLKALLDNQTASRKQITDNLKDSVKTAWDLIADAADKLSQPSYQLSETATTYMQRLQNPNQQPPME------TH-HQPNKV-HNGTASTL-FDDLMPASPAPPKPPATELLQNITHIMNHPTL 250          
BLAST of Gcaud1866.t1 vs. uniprot
Match: A0A7S3E8B0_9RHOD (Mediator of RNA polymerase II transcription subunit 7 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E8B0_9RHOD)

HSP 1 Score: 95.1 bits (235), Expect = 1.160e-19
Identity = 65/194 (33.51%), Postives = 99/194 (51.03%), Query Frame = 0
Query:   11 VSQFPLPPRRYYQSIATQPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPS---APPCD-----------------------ELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEAADEVTQPS 178
            VSQ+P PP  +++      + PP  P+   +Y MFG +Y+TE  LPSLE+SGRK +YDP    A P +                       ELRKLN  LL  FLKLV  LC     E+    ++  +++IE+  +NM HL NT+R  QA   +K  ++ QT  R +   +L ++  +A  ++  A + + + S
Sbjct:    7 VSQWPAPPAMFFRDGVADKV-PPKAPAQGGTYSMFGDVYTTEDKLPSLEESGRKVLYDPKEKYALPTNLQRSGWERTNQDYSNRFLHRRTVELRKLNKMLLNKFLKLVQSLCSNPNTEA----YRTEVEEIENVLINMHHLANTLRTDQAHQTVKRQIERQTELRSKALSDLDKAFDEARGVLRSARNMLQESS 195          
BLAST of Gcaud1866.t1 vs. uniprot
Match: A0A5J4YJP9_PORPP (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YJP9_PORPP)

HSP 1 Score: 91.3 bits (225), Expect = 1.480e-18
Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 0
Query:   11 VSQFPLPPRRYYQSIAT--QPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPSAPPCDELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQ 145
            VSQFP PP+R ++  A+  +   PPPLP    +Y  FG  +ST+  +P+LE+SGRK+++D + P  + LR LNA LL+++ ++V  +      ++ V+PH D   ++E   VNM  LIN++R  QA + L  L+  Q
Sbjct:    4 VSQFPRPPQRLFEGFASLGELPSPPPLPEGT-TYSCFGGTWSTQFTMPTLEESGRKQLFDANVPATESLRMLNARLLKVYEEVVQNIAQEAEHDA-VKPHVD---ELELVIVNMHFLINSLRVPQARLQLAKLITEQ 135          
BLAST of Gcaud1866.t1 vs. uniprot
Match: A0A0K9PG54_ZOSMR (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PG54_ZOSMR)

HSP 1 Score: 82.8 bits (203), Expect = 5.990e-16
Identity = 60/163 (36.81%), Postives = 88/163 (53.99%), Query Frame = 0
Query:   14 FPLPPRRY--YQSIATQPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVY--DPSAPPCDELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEAAD 172
            +P PP  Y  Y+   + P  PPPLP    +Y +FG  Y+T+ +LPSLE+ G +++Y  D +     ELR LN  L   FL+L       +  E P Q +   I++I   F NM HL+N +RP QA   L  LL+ Q   RK+  E++K   K+A  ++ EA +
Sbjct:    7 YPPPPPFYKLYKDAKSGPDPPPPLPKGA-TYTLFGATYTTDDVLPSLEEQGVRQLYPKDSNIDYKKELRALNRDLQLNFLELA-----DVLVERPSQ-YAQRIEEISTIFKNMHHLLNCLRPLQAQATLIHLLELQIERRKQAIEDIKMRRKEAQRMLKEAME 162          
BLAST of Gcaud1866.t1 vs. uniprot
Match: J3M2B3_ORYBR (Mediator of RNA polymerase II transcription subunit 7 n=12 Tax=Oryzeae TaxID=147380 RepID=J3M2B3_ORYBR)

HSP 1 Score: 77.4 bits (189), Expect = 7.760e-14
Identity = 54/153 (35.29%), Postives = 85/153 (55.56%), Query Frame = 0
Query:   21 YYQSIATQPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPSAPPCD---ELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEA 170
            Y +  ++ P  PPP+   +  YQ+FG  Y+T+ +LPSLE  G +++Y P +P  D   ELR LN  L    L+L       I  E P Q +   ++ I   F N+ HL+N++RP QA   L  +L+NQ   RK+  E++K+  ++A  L+ E+
Sbjct:   20 YEKDPSSAPEPPPPV---DGPYQLFGATYTTDVVLPSLEDQGVRQLY-PKSPNIDFKKELRTLNRELQLHILELA-----DILVERPSQ-YARRVEDISLIFKNLHHLLNSLRPHQARATLIHMLENQIQRRKQAIEDIKQRREEAQKLLGES 162          
BLAST of Gcaud1866.t1 vs. uniprot
Match: B9T018_RICCO (Mediator of RNA polymerase II transcription subunit 7 n=6 Tax=rosids TaxID=71275 RepID=B9T018_RICCO)

HSP 1 Score: 75.5 bits (184), Expect = 3.390e-13
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 0
Query:   14 FPLPP---RRYYQSIATQPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPSAPPCD---ELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEA 170
            +P PP   R Y   I      P P P  + +Y  FG  Y+TE++LPSLE+ G +++Y P  P  D   ELR LN  L    L+L       +  E P Q +   ++ I   F N+ HL+N++RP QA   L  +L+ Q   RK+  E++K   ++A  L+ EA
Sbjct:    6 YPPPPPYYRLYKDYIENPKSAPEPPPPIDGTYTCFGANYTTEYVLPSLEEQGVRQLY-PKGPNVDFKKELRSLNRELQLHILEL-----SDVLVERPSQ-YARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQKLLKEA 161          
BLAST of Gcaud1866.t1 vs. uniprot
Match: A0A2C9VD86_MANES (Mediator of RNA polymerase II transcription subunit 7 n=3 Tax=rosids TaxID=71275 RepID=A0A2C9VD86_MANES)

HSP 1 Score: 75.5 bits (184), Expect = 3.390e-13
Identity = 55/153 (35.95%), Postives = 83/153 (54.25%), Query Frame = 0
Query:   21 YYQSIATQPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPSAPPCD---ELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEA 170
            Y Q+  + P  PPP+     +Y  FG  Y+T+++LPSLE+ G +R+Y P+ P  D   ELR LN  L    L+L   L      E P Q +   ++ I   F N+ HL+N++RP QA   L  +L+ Q   RK+  E++K   ++A  L+ EA
Sbjct:   19 YLQNPKSAPEPPPPI---ERTYVCFGANYTTDYVLPSLEEQGVRRLY-PNGPNVDFKKELRSLNRELQLHLLELADVLI-----ERPSQ-YARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQKLLKEA 161          
BLAST of Gcaud1866.t1 vs. uniprot
Match: A0A834H255_RHOSS (Mediator of RNA polymerase II transcription subunit 7 n=3 Tax=Ericales TaxID=41945 RepID=A0A834H255_RHOSS)

HSP 1 Score: 75.1 bits (183), Expect = 4.810e-13
Identity = 53/153 (34.64%), Postives = 83/153 (54.25%), Query Frame = 0
Query:   21 YYQSIATQPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPSAPPCD---ELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEA 170
            Y Q+  + P  PPP+     +Y +FG  Y+T+ +LPSLE+ G +++Y P+ P  D   ELR LN  L    L+L       +  E P Q +   ++ I   F N+ HL+N++RP Q    L  LL++Q   RK+  E++K   ++A  L+ EA
Sbjct:   20 YIQNPNSAPEPPPPI---EGTYVLFGANYTTDDVLPSLEEQGVRQLY-PTGPNIDFKNELRSLNRDLQLHILELA-----DVLVERPSQ-YARRVEDISLIFKNLHHLLNSLRPHQGRATLIHLLESQIQRRKQAVEDIKRRREEAQKLLKEA 162          
BLAST of Gcaud1866.t1 vs. uniprot
Match: UPI00098E7AF2 (mediator of RNA polymerase II transcription subunit 7a-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E7AF2)

HSP 1 Score: 74.7 bits (182), Expect = 7.590e-13
Identity = 52/153 (33.99%), Postives = 83/153 (54.25%), Query Frame = 0
Query:   21 YYQSIATQPMHPPPLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPSAPPCD---ELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEA 170
            Y Q  ++ P  PPP+   + +Y +FG  Y+T+ +LPSLE  G +++Y P  P  D   ELR LN  L    L+L       +  E P Q +   +++I   F N+ HL+N++RP QA   L  +L++Q   RK   E++K   ++A  L+ E+
Sbjct:   23 YLQDPSSAPDPPPPV---DGAYPLFGATYTTDVVLPSLEDQGVRQLY-PKGPTIDFKKELRALNRELQLHILELA-----DVLVERPSQ-YARRVEEISLIFKNLHHLLNSLRPHQARATLIHILESQIQRRKEAVEDIKRRREEAQKLLKES 165          
BLAST of Gcaud1866.t1 vs. uniprot
Match: A0A0D9XP47_9ORYZ (Purple acid phosphatase n=2 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XP47_9ORYZ)

HSP 1 Score: 78.2 bits (191), Expect = 9.870e-13
Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 0
Query:   20 RYYQSIATQPMHPP-PLPSSNDSYQMFGRLYSTEHILPSLEQSGRKRVYDPSAPPCD---ELRKLNASLLQLFLKLVAQLCHPITQESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRKRTTENLKESVKKAWDLIAEA 170
            R Y+     P   P P P  +  YQ+FG  Y+TE +LPSLE  G +++Y P +P  D   ELR LN  L    L+L       I  E P Q +   ++ I   F N+ HL+N++RP QA   L  +L+NQ   RK   E++K+  ++A  L+ E+
Sbjct:  729 RLYKDYEKDPSSAPDPPPPVDGPYQLFGATYTTEVVLPSLEDQGVRQLY-PKSPNIDFKKELRTLNRELQLHILELA-----DILVERPSQ-YARRVEDISLIFKNLHHLLNSLRPHQARATLIHMLENQIRRRKEAIEDIKQRREEAQKLLGES 876          
The following BLAST results are available for this feature:
BLAST of Gcaud1866.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IKS1_9FLOR7.120e-10261.78Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3E8B0_9RHOD1.160e-1933.51Mediator of RNA polymerase II transcription subuni... [more]
A0A5J4YJP9_PORPP1.480e-1838.69Mediator of RNA polymerase II transcription subuni... [more]
A0A0K9PG54_ZOSMR5.990e-1636.81Mediator of RNA polymerase II transcription subuni... [more]
J3M2B3_ORYBR7.760e-1435.29Mediator of RNA polymerase II transcription subuni... [more]
B9T018_RICCO3.390e-1334.97Mediator of RNA polymerase II transcription subuni... [more]
A0A2C9VD86_MANES3.390e-1335.95Mediator of RNA polymerase II transcription subuni... [more]
A0A834H255_RHOSS4.810e-1334.64Mediator of RNA polymerase II transcription subuni... [more]
UPI00098E7AF27.590e-1333.99mediator of RNA polymerase II transcription subuni... [more]
A0A0D9XP47_9ORYZ9.870e-1336.13Purple acid phosphatase n=2 Tax=Leersia perrieri T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009244Mediator complex, subunit Med7PFAMPF05983Med7coord: 29..163
e-value: 1.5E-28
score: 100.3
IPR009244Mediator complex, subunit Med7PANTHERPTHR21428MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7coord: 5..193
IPR044888Mediator complex, subunit Med7 superfmailyGENE3D6.10.140.200coord: 68..168
e-value: 1.7E-20
score: 74.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..222
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 71..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1057_length_14482_cov_4.222709contigNODE_1057_length_14482_cov_4.222709:4257..5036 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1866.t1Gcaud1866.t1Gracilaria caudata M_176_S67 malemRNANODE_1057_length_14482_cov_4.222709 4257..5036 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1866.t1 ID=Gcaud1866.t1|Name=Gcaud1866.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=260bp
MSQPTSKPQQVSQFPLPPRRYYQSIATQPMHPPPLPSSNDSYQMFGRLYS
TEHILPSLEQSGRKRVYDPSAPPCDELRKLNASLLQLFLKLVAQLCHPIT
QESPVQPHKDIIQQIEDTFVNMQHLINTMRPAQAAMDLKTLLDNQTASRK
RTTENLKESVKKAWDLIAEAADEVTQPSYQLSQAATTYLQSLQQQQQRQQ
PPQQHQQTTHAHLSQPIPHAANNSTLVFDDMMPALFTPPKRSTSQLMRDI
DNIVNDPNL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009244Mediatior_Med7
IPR044888Mediatior_Med7_sf
IPR037212Med7/Med21-like