Gcaud2907.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2907.t1
Unique Name	Gcaud2907.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	344

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_18_length_79438_cov_4.566121	contig	NODE_18_length_79438_cov_4.566121:40763..41794 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.A0A090M9W5
PFAMs	Abhydrolase_2
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC00037,RC00094
KEGG ko	ko:K06130
KEGG Reaction	R02747,R03417
KEGG Pathway	ko00564,map00564
Evalue	1.11e-08
EggNOG OGs	COG0400@1\|root,KOG2112@2759\|Eukaryota,37JY6@33090\|Viridiplantae,34KQG@3041\|Chlorophyta
EC	3.1.1.5
Description	Phospholipase/Carboxylesterase
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2907	Gcaud2907	Gracilaria caudata M_176_S67 male	gene	NODE_18_length_79438_cov_4.566121 40763..41794 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2907.t1.stop1	Gcaud2907.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_18_length_79438_cov_4.566121 40763..40765 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2907.t1.CDS1	Gcaud2907.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_18_length_79438_cov_4.566121 40763..41794 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2907.t1.exon1	Gcaud2907.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_18_length_79438_cov_4.566121 40763..41794 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2907.t1.start1	Gcaud2907.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_18_length_79438_cov_4.566121 41792..41794 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2907.t1	Gcaud2907.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_18_length_79438_cov_4.566121 40763..41794 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_18_length_79438_cov_4.566121:40763..41794-
coding sequence from alignment at NODE_18_length_79438_cov_4.566121:40763..41794-

mRNA sequence

>Gcaud2907.t1 ID=Gcaud2907.t1|Name=Gcaud2907.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MSPHPSLFLAAVLLAAHLSLVAAFDPLDIISQLFPCTALRLSRPPWTTTY
FEPSLLPLSAQNVTQERIEELVAGENFTCGGMIPITGHTLLCSPQGFTFV
PPRPARFALIFLHGIVPPDNEASMVPILSRLLATDPELGSQIRIDFPLVQ
FRQITFSNFMSPPVTVARAYFDLLPPPASPSLADVIAADNDRLGLFRAAQ
FVDFTVRSQMCKASIPTSRVAVMGHSLGAFTALETVMSTGLDLAGAVAIS
GSLPRAGDYLRSDVQAFDTRRRDFNLTMIHATGDDVVPFVFGNLSAQILQ
PVFTSLGGGFSFESLEGLDHFNQLFDDAQVYTLIVRALRQAFL*

spliced messenger RNA

>Gcaud2907.t1 ID=Gcaud2907.t1|Name=Gcaud2907.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:40763..41794- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCTCATCCATCACTATTCCTAGCAGCGGTGCTTCTCGCCGCCCA
TCTCTCGCTCGTCGCCGCCTTCGATCCCTTAGATATCATCAGCCAATTGT
TCCCATGCACCGCGCTCCGCTTGTCTCGTCCGCCGTGGACCACCACGTAT
TTTGAACCGTCTCTGCTGCCGTTGTCCGCGCAGAATGTCACTCAAGAGCG
CATCGAGGAGCTCGTCGCCGGAGAAAACTTCACCTGCGGCGGGATGATTC
CCATCACGGGACACACTTTGCTTTGTTCTCCACAGGGGTTCACGTTTGTT
CCGCCGCGCCCAGCCCGCTTCGCGCTGATCTTCTTGCACGGCATTGTGCC
GCCGGACAATGAAGCTTCCATGGTACCAATTTTGTCTCGACTACTTGCCA
CCGATCCGGAGCTCGGTTCTCAGATACGAATTGATTTTCCGCTCGTTCAG
TTCCGTCAAATCACATTTTCGAACTTTATGTCACCGCCAGTGACAGTAGC
ACGCGCATACTTTGATCTTCTTCCACCACCGGCATCTCCGTCGTTAGCGG
ATGTGATAGCGGCTGACAATGATCGTTTGGGCCTGTTCCGCGCCGCTCAG
TTCGTCGACTTCACTGTGCGCTCGCAGATGTGCAAGGCGTCCATCCCCAC
GTCGCGTGTCGCGGTGATGGGTCACTCGTTAGGAGCCTTTACCGCGTTAG
AAACCGTCATGTCCACCGGGCTCGATCTGGCCGGCGCTGTTGCTATATCG
GGTAGTTTGCCCAGGGCTGGTGATTATCTTCGATCGGATGTACAGGCCTT
CGATACGCGCAGAAGAGACTTTAACCTCACTATGATTCACGCCACAGGCG
ACGATGTAGTTCCATTTGTGTTTGGTAATCTGTCGGCGCAGATCTTGCAG
CCAGTGTTCACTTCGCTTGGCGGTGGCTTCAGCTTCGAGAGTCTTGAAGG
ACTGGACCACTTCAACCAGCTGTTCGATGATGCACAGGTGTACACCCTCA
TTGTTCGGGCACTGCGACAGGCTTTTCTCTGA

protein sequence of Gcaud2907.t1

>Gcaud2907.t1 ID=Gcaud2907.t1|Name=Gcaud2907.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MSPHPSLFLAAVLLAAHLSLVAAFDPLDIISQLFPCTALRLSRPPWTTTY
FEPSLLPLSAQNVTQERIEELVAGENFTCGGMIPITGHTLLCSPQGFTFV
PPRPARFALIFLHGIVPPDNEASMVPILSRLLATDPELGSQIRIDFPLVQ
FRQITFSNFMSPPVTVARAYFDLLPPPASPSLADVIAADNDRLGLFRAAQ
FVDFTVRSQMCKASIPTSRVAVMGHSLGAFTALETVMSTGLDLAGAVAIS
GSLPRAGDYLRSDVQAFDTRRRDFNLTMIHATGDDVVPFVFGNLSAQILQ
PVFTSLGGGFSFESLEGLDHFNQLFDDAQVYTLIVRALRQAFL*

mRNA from alignment at NODE_18_length_79438_cov_4.566121:40763..41794-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2907.t1 ID=Gcaud2907.t1|Name=Gcaud2907.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:40763..41794- (Gracilaria caudata M_176_S67 male)
ATGTCTCCTCATCCATCACTATTCCTAGCAGCGGTGCTTCTCGCCGCCCA
TCTCTCGCTCGTCGCCGCCTTCGATCCCTTAGATATCATCAGCCAATTGT
TCCCATGCACCGCGCTCCGCTTGTCTCGTCCGCCGTGGACCACCACGTAT
TTTGAACCGTCTCTGCTGCCGTTGTCCGCGCAGAATGTCACTCAAGAGCG
CATCGAGGAGCTCGTCGCCGGAGAAAACTTCACCTGCGGCGGGATGATTC
CCATCACGGGACACACTTTGCTTTGTTCTCCACAGGGGTTCACGTTTGTT
CCGCCGCGCCCAGCCCGCTTCGCGCTGATCTTCTTGCACGGCATTGTGCC
GCCGGACAATGAAGCTTCCATGGTACCAATTTTGTCTCGACTACTTGCCA
CCGATCCGGAGCTCGGTTCTCAGATACGAATTGATTTTCCGCTCGTTCAG
TTCCGTCAAATCACATTTTCGAACTTTATGTCACCGCCAGTGACAGTAGC
ACGCGCATACTTTGATCTTCTTCCACCACCGGCATCTCCGTCGTTAGCGG
ATGTGATAGCGGCTGACAATGATCGTTTGGGCCTGTTCCGCGCCGCTCAG
TTCGTCGACTTCACTGTGCGCTCGCAGATGTGCAAGGCGTCCATCCCCAC
GTCGCGTGTCGCGGTGATGGGTCACTCGTTAGGAGCCTTTACCGCGTTAG
AAACCGTCATGTCCACCGGGCTCGATCTGGCCGGCGCTGTTGCTATATCG
GGTAGTTTGCCCAGGGCTGGTGATTATCTTCGATCGGATGTACAGGCCTT
CGATACGCGCAGAAGAGACTTTAACCTCACTATGATTCACGCCACAGGCG
ACGATGTAGTTCCATTTGTGTTTGGTAATCTGTCGGCGCAGATCTTGCAG
CCAGTGTTCACTTCGCTTGGCGGTGGCTTCAGCTTCGAGAGTCTTGAAGG
ACTGGACCACTTCAACCAGCTGTTCGATGATGCACAGGTGTACACCCTCA
TTGTTCGGGCACTGCGACAGGCTTTTCTCTGA

Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:40763..41794-

>Gcaud2907.t1 ID=Gcaud2907.t1|Name=Gcaud2907.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:40763..41794- (Gracilaria caudata M_176_S67 male)
ATGTCTCCTCATCCATCACTATTCCTAGCAGCGGTGCTTCTCGCCGCCCA
TCTCTCGCTCGTCGCCGCCTTCGATCCCTTAGATATCATCAGCCAATTGT
TCCCATGCACCGCGCTCCGCTTGTCTCGTCCGCCGTGGACCACCACGTAT
TTTGAACCGTCTCTGCTGCCGTTGTCCGCGCAGAATGTCACTCAAGAGCG
CATCGAGGAGCTCGTCGCCGGAGAAAACTTCACCTGCGGCGGGATGATTC
CCATCACGGGACACACTTTGCTTTGTTCTCCACAGGGGTTCACGTTTGTT
CCGCCGCGCCCAGCCCGCTTCGCGCTGATCTTCTTGCACGGCATTGTGCC
GCCGGACAATGAAGCTTCCATGGTACCAATTTTGTCTCGACTACTTGCCA
CCGATCCGGAGCTCGGTTCTCAGATACGAATTGATTTTCCGCTCGTTCAG
TTCCGTCAAATCACATTTTCGAACTTTATGTCACCGCCAGTGACAGTAGC
ACGCGCATACTTTGATCTTCTTCCACCACCGGCATCTCCGTCGTTAGCGG
ATGTGATAGCGGCTGACAATGATCGTTTGGGCCTGTTCCGCGCCGCTCAG
TTCGTCGACTTCACTGTGCGCTCGCAGATGTGCAAGGCGTCCATCCCCAC
GTCGCGTGTCGCGGTGATGGGTCACTCGTTAGGAGCCTTTACCGCGTTAG
AAACCGTCATGTCCACCGGGCTCGATCTGGCCGGCGCTGTTGCTATATCG
GGTAGTTTGCCCAGGGCTGGTGATTATCTTCGATCGGATGTACAGGCCTT
CGATACGCGCAGAAGAGACTTTAACCTCACTATGATTCACGCCACAGGCG
ACGATGTAGTTCCATTTGTGTTTGGTAATCTGTCGGCGCAGATCTTGCAG
CCAGTGTTCACTTCGCTTGGCGGTGGCTTCAGCTTCGAGAGTCTTGAAGG
ACTGGACCACTTCAACCAGCTGTTCGATGATGCACAGGTGTACACCCTCA
TTGTTCGGGCACTGCGACAGGCTTTTCTCTGA