Gcaud1865.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1865.t1
Unique NameGcaud1865.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Homology
BLAST of Gcaud1865.t1 vs. uniprot
Match: A0A2V3II35_9FLOR (Putative pre-16S rRNA nuclease n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II35_9FLOR)

HSP 1 Score: 243 bits (620), Expect = 4.090e-78
Identity = 129/227 (56.83%), Postives = 164/227 (72.25%), Query Frame = 0
Query:    1 MESMSTTAFVPVCPTRFRAQFPRARTQRCQRDRIPLAARIGVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSGITGRNIRDFVDCESAVMLLQRHFSEKDDYRSEVVHRPIPVTAEEHQT-EERMTFAEWKKQTMQRAAQSVHFRKKNKK 226
            ME+ +   F+PV  T            +  R R+ L ARIG RTLGVDYGLRRVGLA+SVGVAPRPL R++HRN+P++ A DVA+VA+ +LA+AIVVGMP  L G E EQA+ TR F++ELV SAPWA+I  LNETFTS DA  QL D GITG++++ ++D  SAVMLLQR+FS+ DDY++EV+H P P   EE ++  ER+TFAEW+KQ M RAAQ     K+ KK
Sbjct:    1 METAAFAGFIPVFSTS---------NTKAPRSRVNLVARIGERTLGVDYGLRRVGLAVSVGVAPRPLQRVEHRNDPRRAALDVARVANSNLADAIVVGMPFLLVGAEGEQALATRRFIEELVSSAPWAKIFTLNETFTSMDARTQLYDMGITGKDVKTYIDSTSAVMLLQRYFSDNDDYKAEVIHTPQPAGEEERRSGNERITFAEWRKQIMDRAAQGSQTGKQPKK 218          
BLAST of Gcaud1865.t1 vs. uniprot
Match: A0A7S1HCJ2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HCJ2_HEMAN)

HSP 1 Score: 119 bits (297), Expect = 4.750e-30
Identity = 62/138 (44.93%), Postives = 93/138 (67.39%), Query Frame = 0
Query:   38 ARIGVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSGITGRNIRDFVDCESAVMLLQRHFSE 175
            +++G +T+GVDYGLRR G+ +SVG APRPL  I+H  +P  VA++VA+ A R LAE IVVG+P++  G E EQA  TR  V  L  +AP   I + +E F+S  A E+L ++G + R+++  VD  ++V +LQ  F++
Sbjct:    1 SQMGRKTIGVDYGLRRTGVCVSVGYAPRPLPLIEHNRDPAFVAKEVAEHARRELAEQIVVGLPLNSRGGEGEQANATRVMVAALTEAAPGCNIYLWDERFSSAVAREKLEEAGYSSRSMKGLVDTVASVGILQDFFAK 138          
BLAST of Gcaud1865.t1 vs. uniprot
Match: A0A7S2ZDD4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDD4_9RHOD)

HSP 1 Score: 112 bits (281), Expect = 4.600e-27
Identity = 60/139 (43.17%), Postives = 88/139 (63.31%), Query Frame = 0
Query:   40 IGVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSGITGRNIRDFVDCESAVMLLQRHFSEKDD 178
            +G +TL VDYGLRRVGLA+SVG+APR LN+I +R N  +VA+ ++ VA R +   +VVG+P++  GDE EQA  TR F + L  + P   I + +E F+++ A  +L  S      + +FVD E+AV +L+  F    D
Sbjct:   20 LGKKTLAVDYGLRRVGLALSVGIAPRRLNKIYNRGNLGEVARRISDVARREMVLQVVVGLPLNSKGDEGEQAAATRKFCEYLRIALPEPPIYLWDERFSTQTARNRLMSSKTYRNQVENFVDSEAAVAILEDFFENSGD 158          
BLAST of Gcaud1865.t1 vs. uniprot
Match: A0A7S4PGM8_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PGM8_GUITH)

HSP 1 Score: 102 bits (253), Expect = 1.760e-22
Identity = 55/137 (40.15%), Postives = 84/137 (61.31%), Query Frame = 0
Query:   41 GVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSGITGRNIRDFVDCESAVMLLQRHFSEKD 177
            GV+T+GVD+G RR G+  SVG APRPL  I H ++ K VA ++A+   +  A+ IVVG+P+D  G E EQA  TR FV+ L  + P   I + +E +++ DA E+LR  G    +++  +D  +++ +L   F  KD
Sbjct:  100 GVKTIGVDHGRRRTGICASVGYAPRPLRVIQHNDDNKFVATEIAEEVRKEAAQHIVVGLPLDSQGREGEQANYTRVFVECLKQACPQCTIFLWDERYSTVDATEKLRSLGYNSFDMKGMIDVVASIGILT-DFYHKD 235          
BLAST of Gcaud1865.t1 vs. uniprot
Match: A0A7S3E813_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E813_9RHOD)

HSP 1 Score: 99.4 bits (246), Expect = 1.770e-22
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   40 IGVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSGIT 152
            +G +TL VDYGLRRVGLA+SVG+APR LN+I +R N  +VA+ ++ VA R +   +VVG+P++  GDE EQA  TR F + L  + P   I + +E F+++ A  +L  S  T
Sbjct:   20 LGKKTLAVDYGLRRVGLALSVGIAPRRLNKIYNRGNLGEVARRISDVARREMVLQVVVGLPLNSKGDEGEQAAATRKFCEYLRIALPEPPIYLWDERFSTQTARNRLMSSSAT 132          
BLAST of Gcaud1865.t1 vs. uniprot
Match: M2X2I9_GALSU (DNA binding / hydrolase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X2I9_GALSU)

HSP 1 Score: 93.6 bits (231), Expect = 1.820e-19
Identity = 51/134 (38.06%), Postives = 81/134 (60.45%), Query Frame = 0
Query:   41 GVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMPVDLYGD-EKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSGITGRNIRDFVDCESAVMLLQRHF 173
            G + +GVDYG+ RVG+A+SVG +PRPL  I H NN   V + ++++ S   AE IVVG+P+    +    Q     +F Q + +     E+ + +E +TS  A E+L + GI+  N ++ +D E+AV+LL+R F
Sbjct:   61 GRKAVGVDYGMSRVGVAVSVGFSPRPLTCIKHENNTDLVLEKLSEIVSSERAEIIVVGLPLSARVECSSGQTQKAMNFAQLVANRFSKQEVYLCDEKYTSIVANERLAERGISLVNSKELIDSEAAVVLLERFF 194          
BLAST of Gcaud1865.t1 vs. uniprot
Match: A0A1X6P5R6_PORUM (YqgFc domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5R6_PORUM)

HSP 1 Score: 90.5 bits (223), Expect = 1.390e-18
Identity = 53/123 (43.09%), Postives = 69/123 (56.10%), Query Frame = 0
Query:   19 AQFPRARTQRCQRDRIPLAARIGVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKD 141
            A FPR R Q             G R LGVDYGLRR GLA  VG A RPL R+ H  +P   A+ VA  A+      IVVG+P++  G E +Q + TR FV  LV  APWA + + +E ++S++
Sbjct:   35 ADFPRGRGQHSPXXXXSRRF-FGTRALGVDYGLRRTGLASGVGYASRPLPRLTHGRSPDGAAEAVATAAAG--VRLIVVGLPLNGAGREGDQCVATRRFVARLVARAPWAAVWLYDERWSSQE 154          
BLAST of Gcaud1865.t1 vs. uniprot
Match: A0A7S3X7E5_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X7E5_EMIHU)

HSP 1 Score: 86.7 bits (213), Expect = 3.920e-17
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 0
Query:   41 GVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRN-NPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLR--DSGITGRNIRDFVDCESAVMLLQRHFSEKDDYRSEVVHRP 187
            G RTLGVD+GLRR GLA+S G+AP P+  ID ++ N   VA  V + A    A  +V+GMP +  G E EQA+ TR F + L   A    + + +E F+S +A+ +    D    G++I D      A  ++   F E D   +E++  P
Sbjct:   60 GTRTLGVDFGLRRTGLAVSAGIAPLPIGIIDDQSANLTAVAAQVVRAARSEGASQLVLGMPYNSSGGEGEQAVATRRFGELLAREAAPRPVYLWDERFSSAEASMRANAGDGAARGQSIDDV-----AAAIILEEFFEGDFASAELIAPP 204          
BLAST of Gcaud1865.t1 vs. uniprot
Match: A0A8J2T1I1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1I1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.120e-16
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 0
Query:   35 PLAA-RIGVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSGITGRNIRDFVDCESAVMLLQRHFSEKDDYRSEVVHRPIP 189
            PLA  RI   TLGVDYGLRRVG+ + VG A RPL  I+H  +   V   + Q+A R    +IVVG+P++  G E  Q   TR F   L  +AP   +++ +E F+S++A   L             +D  +A ++L   F+  DD  +     P P
Sbjct:   68 PLAPPRIAPPTLGVDYGLRRVGVCVGVGFASRPLEVIEHDEDIDAVVARLLQIARRERIASIVVGLPLEKDGAEGLQCAATRRFADALAAAAPATPLVLWDERFSSREAEALLAHRPGAA------LDAVAACVILDDFFASADDGAAAPPAPPAP 217          
BLAST of Gcaud1865.t1 vs. uniprot
Match: R1ED05_EMIHU (YqgFc domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ED05_EMIHU)

HSP 1 Score: 85.5 bits (210), Expect = 1.220e-16
Identity = 54/147 (36.73%), Postives = 80/147 (54.42%), Query Frame = 0
Query:   41 GVRTLGVDYGLRRVGLAISVGVAPRPLNRIDHRN-NPKKVAQDVAQVASRSLAEAIVVGMPVDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLR--DSGITGRNIRDFVDCESAVMLLQRHFSEKDDYRSEVV 184
            G RTLGVD+GLRR GLA+S G+AP P+  ID ++ N   VA  V + A    A  +V+GMP +  G E EQA+ TR F + L   A    + + +E F+S +A+ +    D    G++I D      A  ++   F E D   +E++
Sbjct:   24 GTRTLGVDFGLRRTGLAVSAGIAPLPIGIIDDQSANLTAVAAQVVRAARSEGASQLVLGMPYNSSGGEGEQAVATRRFGELLAREAAPRPVYLWDERFSSAEASMRANAGDGAARGQSIDDV-----AAAIILEEFFEGDFASAELI 165          
The following BLAST results are available for this feature:
BLAST of Gcaud1865.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3II35_9FLOR4.090e-7856.83Putative pre-16S rRNA nuclease n=1 Tax=Gracilariop... [more]
A0A7S1HCJ2_HEMAN4.750e-3044.93Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2ZDD4_9RHOD4.600e-2743.17Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S4PGM8_GUITH1.760e-2240.15Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]
A0A7S3E813_9RHOD1.770e-2246.02Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M2X2I9_GALSU1.820e-1938.06DNA binding / hydrolase n=1 Tax=Galdieria sulphura... [more]
A0A1X6P5R6_PORUM1.390e-1843.09YqgFc domain-containing protein n=1 Tax=Porphyra u... [more]
A0A7S3X7E5_EMIHU3.920e-1736.67Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A8J2T1I1_9STRA1.120e-1635.90Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
R1ED05_EMIHU1.220e-1636.73YqgFc domain-containing protein n=2 Tax=Emiliania ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 42..142
e-value: 5.1E-9
score: 46.0
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 43..174
e-value: 1.9E-26
score: 93.1
IPR005227Putative pre-16S rRNA nucleasePANTHERPTHR33317POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 30..201
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 42..177
score: 15.952372
IPR005227Putative pre-16S rRNA nucleaseCDDcd16964YqgFcoord: 45..175
e-value: 1.37912E-29
score: 105.647
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 40..186
e-value: 8.6E-30
score: 105.5
NoneNo IPR availablePANTHERPTHR33317:SF4POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 30..201
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 43..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1057_length_14482_cov_4.222709contigNODE_1057_length_14482_cov_4.222709:2190..2897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1865.t1Gcaud1865.t1Gracilaria caudata M_176_S67 malemRNANODE_1057_length_14482_cov_4.222709 2190..2897 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1865.t1 ID=Gcaud1865.t1|Name=Gcaud1865.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MESMSTTAFVPVCPTRFRAQFPRARTQRCQRDRIPLAARIGVRTLGVDYG
LRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMP
VDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSG
ITGRNIRDFVDCESAVMLLQRHFSEKDDYRSEVVHRPIPVTAEEHQTEER
MTFAEWKKQTMQRAAQSVHFRKKNKKMKLKGGIMN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006641YqgF/RNaseH-like_dom
IPR005227YqgF
IPR037027YqgF/RNaseH-like_dom_sf
IPR012337RNaseH-like_sf