Gcaud1867.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1867.t1
Unique NameGcaud1867.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length307
Homology
BLAST of Gcaud1867.t1 vs. uniprot
Match: A0A2V3II43_9FLOR (Zinc finger protein ZIC 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II43_9FLOR)

HSP 1 Score: 175 bits (444), Expect = 6.460e-49
Identity = 133/325 (40.92%), Postives = 175/325 (53.85%), Query Frame = 0
Query:    1 MFSKRSNLKAHSRVHSGVLPYPCEYPGCTKRFRWKSSLKPHIKVHQVAEQSAELQNVAASSVSSVTTGVTPPQPPALLEKHVINTSSSPGLPISEESLHPPSPRAQCSPTAVNQTTALN-TTPW-PQPPQ-EGRRYPCSYPTCSAAFPRLSHLLDHENGLAHH---PQMKSS--VARTLFPNEME-QNVSLDLRANSVLSDSSDDTDVLS---FTLHSPRVDSV--PTADIPISDLTESLWKSELHLDDPFGDFSMGL--QTKEADLLCMGEPHYNSVGLSSSSVDMMYN---PTLATSTIGTSQSGGLHPLGIDYPVNLASLCL 306
            +FSKRSNLKAHSRVHSGVLPYP                       Q                +S         P  L   +  N +S+    +S+    PP    Q SPTA+ Q++ L+  + W P  P  + RRY C+YP C A F RL+ LLDHEN   H+   P   +S  +ARTLF  + + Q++ +DLRANSVLSDSSDDTDV S    T +SPR + +    AD+ I DLTESLWK++LHLDDPF DFS+      ++ DLL + +   +++   S+SVDM YN   P  + S I  +   G  P+ +DY VNLAS CL
Sbjct:   44 IFSKRSNLKAHSRVHSGVLPYPXXXXXXXXXXXXXXXXXXXXXXXQSQPPXXXXXXXXXXXXTS---------PVPLNASNANNPAST---LVSDRQ--PP----QSSPTAITQSSMLHQASTWLPHNPNLDNRRYNCTYPPCPATFNRLAALLDHENSAVHNNIKPAAATSAPIARTLFSAQQQAQSMPIDLRANSVLSDSSDDTDVFSSFNLTNNSPRNNPIHPAAADLSIPDLTESLWKNDLHLDDPFADFSLINIHPPRDGDLLSIADATISAIATPSASVDM-YNSPAPQPSNSLINCTAVQGAQPVAVDYAVNLASFCL 349          
BLAST of Gcaud1867.t1 vs. uniprot
Match: A0A7S1XF36_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF36_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 1.890e-7
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 0
Query:    1 MFSKRSNLKAHSRVHSGVLPYPCEYPGCTKRFRWKSSLKPHIKVHQVAE-------QSAELQNVAASSVSSVTT 67
            +FS R NL+ H RVHSGV P+ C    C KRFRWKSS+K H++     E       ++AE+Q    S  S V T
Sbjct:   21 IFSTRYNLRVHQRVHSGVKPFSCHI--CNKRFRWKSSVKGHMRSQHFIECDILGKEETAEVQKFEVSEKSFVAT 92          
BLAST of Gcaud1867.t1 vs. uniprot
Match: A0A5J4YUM6_PORPP (Zinc finger protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUM6_PORPP)

HSP 1 Score: 62.8 bits (151), Expect = 2.140e-7
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 MFSKRSNLKAHSRVHSGVLPYPCEYPGCTKRFRWKSSLKPHIKVHQ 46
            +F++RSNLK H R+H+   PY C YPGC+K+++W+S L  HI  H+
Sbjct:  133 LFTRRSNLKVHKRMHTEEEPYICTYPGCSKQYKWRSCLASHILAHE 178          
BLAST of Gcaud1867.t1 vs. uniprot
Match: A0A1X6NUK8_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUK8_PORUM)

HSP 1 Score: 57.4 bits (137), Expect = 1.450e-6
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 MFSKRSNLKAHSRVHSGVLPYPCEYPGCTKRFRWKSSLKPHIKVHQVAEQSAELQNVAASSVS 63
            +FSKR NLKAH R H+G  P+ C +  C +RF WKSSL  H   H    + +E+Q +AA+S +
Sbjct:   34 LFSKRFNLKAHLRKHTGDKPFVCRH--CARRFMWKSSLSSHELGHA---RRSEMQEIAAASAA 91          
BLAST of Gcaud1867.t1 vs. uniprot
Match: A0A7S1TB56_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TB56_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 2.510e-6
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0
Query:    2 FSKRSNLKAHSRVHSGVLPYPCEYPGCTKRFRWKSSLKPHIKVH 45
            FS   NL+ H R+H G  P  C   GCT++FRW SSLK H++ H
Sbjct:   31 FSTAYNLRVHCRIHLGTYPRECHMEGCTRKFRWPSSLKSHLRSH 74          
The following BLAST results are available for this feature:
BLAST of Gcaud1867.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3II43_9FLOR6.460e-4940.92Zinc finger protein ZIC 3 n=1 Tax=Gracilariopsis c... [more]
A0A7S1XF36_9RHOD1.890e-744.59Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YUM6_PORPP2.140e-750.00Zinc finger protein n=1 Tax=Porphyridium purpureum... [more]
A0A1X6NUK8_PORUM1.450e-646.03Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A7S1TB56_9RHOD2.510e-650.00Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 21..45
e-value: 0.0011
score: 28.3
coord: 133..159
e-value: 3.7
score: 16.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 23..45
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 135..159
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 133..164
score: 9.348555
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 21..50
score: 10.761805
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..56
e-value: 9.9E-12
score: 46.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..130
NoneNo IPR availablePANTHERPTHR23235:SF104KRUPPEL-LIKE FACTOR 4coord: 1..93
NoneNo IPR availablePANTHERPTHR23235KRUEPPEL-LIKE TRANSCRIPTION FACTORcoord: 1..93
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1057_length_14482_cov_4.222709contigNODE_1057_length_14482_cov_4.222709:7932..8852 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1867.t1Gcaud1867.t1Gracilaria caudata M_176_S67 malemRNANODE_1057_length_14482_cov_4.222709 7932..8852 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1867.t1 ID=Gcaud1867.t1|Name=Gcaud1867.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=307bp
MFSKRSNLKAHSRVHSGVLPYPCEYPGCTKRFRWKSSLKPHIKVHQVAEQ
SAELQNVAASSVSSVTTGVTPPQPPALLEKHVINTSSSPGLPISEESLHP
PSPRAQCSPTAVNQTTALNTTPWPQPPQEGRRYPCSYPTCSAAFPRLSHL
LDHENGLAHHPQMKSSVARTLFPNEMEQNVSLDLRANSVLSDSSDDTDVL
SFTLHSPRVDSVPTADIPISDLTESLWKSELHLDDPFGDFSMGLQTKEAD
LLCMGEPHYNSVGLSSSSVDMMYNPTLATSTIGTSQSGGLHPLGIDYPVN
LASLCL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf