Gcaud1867.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1867.t1
Unique Name	Gcaud1867.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	307

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1057_length_14482_cov_4.222709	contig	NODE_1057_length_14482_cov_4.222709:7932..8852 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6669.EFX70877
Preferred name	GTF3A
PFAMs	zf-C2H2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09191
GOs	GO:0000976,GO:0000981,GO:0000982,GO:0000987,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006383,GO:0006725,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019843,GO:0022613,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:1990837,GO:2000112,GO:2001141
Evalue	1.65e-06
EggNOG OGs	KOG1721@1\|root,KOG1721@2759\|Eukaryota,39CGA@33154\|Opisthokonta,3BI01@33208\|Metazoa,3CYEY@33213\|Bilateria,4205B@6656\|Arthropoda
Description	Metal ion binding
COG category	K
BRITE	ko00000,ko03000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1867	Gcaud1867	Gracilaria caudata M_176_S67 male	gene	NODE_1057_length_14482_cov_4.222709 7932..8852 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1867.t1.stop1	Gcaud1867.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1057_length_14482_cov_4.222709 7932..7934 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1867.t1.CDS1	Gcaud1867.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1057_length_14482_cov_4.222709 7932..8852 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1867.t1.exon1	Gcaud1867.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1057_length_14482_cov_4.222709 7932..8852 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1867.t1.start1	Gcaud1867.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1057_length_14482_cov_4.222709 8850..8852 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1867.t1	Gcaud1867.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1057_length_14482_cov_4.222709 7932..8852 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1057_length_14482_cov_4.222709:7932..8852-
coding sequence from alignment at NODE_1057_length_14482_cov_4.222709:7932..8852-

mRNA sequence

>Gcaud1867.t1 ID=Gcaud1867.t1|Name=Gcaud1867.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=307bp
MFSKRSNLKAHSRVHSGVLPYPCEYPGCTKRFRWKSSLKPHIKVHQVAEQ
SAELQNVAASSVSSVTTGVTPPQPPALLEKHVINTSSSPGLPISEESLHP
PSPRAQCSPTAVNQTTALNTTPWPQPPQEGRRYPCSYPTCSAAFPRLSHL
LDHENGLAHHPQMKSSVARTLFPNEMEQNVSLDLRANSVLSDSSDDTDVL
SFTLHSPRVDSVPTADIPISDLTESLWKSELHLDDPFGDFSMGLQTKEAD
LLCMGEPHYNSVGLSSSSVDMMYNPTLATSTIGTSQSGGLHPLGIDYPVN
LASLCL*

spliced messenger RNA

>Gcaud1867.t1 ID=Gcaud1867.t1|Name=Gcaud1867.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=921bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:7932..8852- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAGCAAGCGGTCAAACCTAAAGGCTCACTCCCGAGTGCACAGTGG
AGTGCTTCCTTACCCATGTGAATATCCCGGCTGCACGAAGCGCTTCCGAT
GGAAGTCTTCTCTCAAGCCGCACATCAAGGTTCACCAGGTGGCGGAGCAG
TCCGCAGAACTGCAAAATGTGGCCGCGTCTTCTGTATCCTCTGTCACCAC
CGGTGTTACTCCCCCACAACCTCCTGCGTTGTTGGAGAAACATGTAATCA
ATACTTCTTCTTCTCCCGGGTTACCAATTTCAGAAGAATCCTTGCATCCT
CCCTCTCCCCGAGCTCAGTGTTCACCAACTGCAGTTAATCAAACCACGGC
TCTGAACACTACTCCATGGCCGCAGCCGCCACAGGAAGGTCGCAGATACC
CATGTTCCTATCCTACATGCAGTGCGGCATTCCCTCGTCTCTCCCATCTA
CTCGACCATGAGAACGGCTTGGCACACCACCCTCAAATGAAATCCTCTGT
GGCACGCACCCTATTCCCGAATGAGATGGAGCAAAATGTTTCATTGGATC
TTCGGGCAAACTCGGTTCTCAGTGACTCTTCTGATGACACAGATGTACTC
TCATTTACCCTTCATTCCCCAAGAGTTGACTCGGTGCCGACGGCTGACAT
TCCAATTTCGGATCTCACCGAAAGTCTATGGAAAAGCGAGCTGCATCTTG
ATGATCCGTTTGGTGATTTCTCCATGGGTCTCCAGACAAAGGAAGCCGAC
TTACTATGCATGGGTGAACCCCATTATAACAGTGTGGGCCTGAGCTCCTC
TTCAGTGGATATGATGTACAACCCAACACTGGCAACTTCGACGATAGGTA
CTTCTCAATCCGGTGGTCTGCACCCACTCGGGATTGATTACCCGGTGAAC
TTAGCTTCTTTGTGTTTGTAA

protein sequence of Gcaud1867.t1

>Gcaud1867.t1 ID=Gcaud1867.t1|Name=Gcaud1867.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=307bp
MFSKRSNLKAHSRVHSGVLPYPCEYPGCTKRFRWKSSLKPHIKVHQVAEQ
SAELQNVAASSVSSVTTGVTPPQPPALLEKHVINTSSSPGLPISEESLHP
PSPRAQCSPTAVNQTTALNTTPWPQPPQEGRRYPCSYPTCSAAFPRLSHL
LDHENGLAHHPQMKSSVARTLFPNEMEQNVSLDLRANSVLSDSSDDTDVL
SFTLHSPRVDSVPTADIPISDLTESLWKSELHLDDPFGDFSMGLQTKEAD
LLCMGEPHYNSVGLSSSSVDMMYNPTLATSTIGTSQSGGLHPLGIDYPVN
LASLCL*

mRNA from alignment at NODE_1057_length_14482_cov_4.222709:7932..8852-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1867.t1 ID=Gcaud1867.t1|Name=Gcaud1867.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=921bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:7932..8852- (Gracilaria caudata M_176_S67 male)
ATGTTCAGCAAGCGGTCAAACCTAAAGGCTCACTCCCGAGTGCACAGTGG
AGTGCTTCCTTACCCATGTGAATATCCCGGCTGCACGAAGCGCTTCCGAT
GGAAGTCTTCTCTCAAGCCGCACATCAAGGTTCACCAGGTGGCGGAGCAG
TCCGCAGAACTGCAAAATGTGGCCGCGTCTTCTGTATCCTCTGTCACCAC
CGGTGTTACTCCCCCACAACCTCCTGCGTTGTTGGAGAAACATGTAATCA
ATACTTCTTCTTCTCCCGGGTTACCAATTTCAGAAGAATCCTTGCATCCT
CCCTCTCCCCGAGCTCAGTGTTCACCAACTGCAGTTAATCAAACCACGGC
TCTGAACACTACTCCATGGCCGCAGCCGCCACAGGAAGGTCGCAGATACC
CATGTTCCTATCCTACATGCAGTGCGGCATTCCCTCGTCTCTCCCATCTA
CTCGACCATGAGAACGGCTTGGCACACCACCCTCAAATGAAATCCTCTGT
GGCACGCACCCTATTCCCGAATGAGATGGAGCAAAATGTTTCATTGGATC
TTCGGGCAAACTCGGTTCTCAGTGACTCTTCTGATGACACAGATGTACTC
TCATTTACCCTTCATTCCCCAAGAGTTGACTCGGTGCCGACGGCTGACAT
TCCAATTTCGGATCTCACCGAAAGTCTATGGAAAAGCGAGCTGCATCTTG
ATGATCCGTTTGGTGATTTCTCCATGGGTCTCCAGACAAAGGAAGCCGAC
TTACTATGCATGGGTGAACCCCATTATAACAGTGTGGGCCTGAGCTCCTC
TTCAGTGGATATGATGTACAACCCAACACTGGCAACTTCGACGATAGGTA
CTTCTCAATCCGGTGGTCTGCACCCACTCGGGATTGATTACCCGGTGAAC
TTAGCTTCTTTGTGTTTGTAA

Coding sequence (CDS) from alignment at NODE_1057_length_14482_cov_4.222709:7932..8852-

>Gcaud1867.t1 ID=Gcaud1867.t1|Name=Gcaud1867.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=921bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:7932..8852- (Gracilaria caudata M_176_S67 male)
ATGTTCAGCAAGCGGTCAAACCTAAAGGCTCACTCCCGAGTGCACAGTGG
AGTGCTTCCTTACCCATGTGAATATCCCGGCTGCACGAAGCGCTTCCGAT
GGAAGTCTTCTCTCAAGCCGCACATCAAGGTTCACCAGGTGGCGGAGCAG
TCCGCAGAACTGCAAAATGTGGCCGCGTCTTCTGTATCCTCTGTCACCAC
CGGTGTTACTCCCCCACAACCTCCTGCGTTGTTGGAGAAACATGTAATCA
ATACTTCTTCTTCTCCCGGGTTACCAATTTCAGAAGAATCCTTGCATCCT
CCCTCTCCCCGAGCTCAGTGTTCACCAACTGCAGTTAATCAAACCACGGC
TCTGAACACTACTCCATGGCCGCAGCCGCCACAGGAAGGTCGCAGATACC
CATGTTCCTATCCTACATGCAGTGCGGCATTCCCTCGTCTCTCCCATCTA
CTCGACCATGAGAACGGCTTGGCACACCACCCTCAAATGAAATCCTCTGT
GGCACGCACCCTATTCCCGAATGAGATGGAGCAAAATGTTTCATTGGATC
TTCGGGCAAACTCGGTTCTCAGTGACTCTTCTGATGACACAGATGTACTC
TCATTTACCCTTCATTCCCCAAGAGTTGACTCGGTGCCGACGGCTGACAT
TCCAATTTCGGATCTCACCGAAAGTCTATGGAAAAGCGAGCTGCATCTTG
ATGATCCGTTTGGTGATTTCTCCATGGGTCTCCAGACAAAGGAAGCCGAC
TTACTATGCATGGGTGAACCCCATTATAACAGTGTGGGCCTGAGCTCCTC
TTCAGTGGATATGATGTACAACCCAACACTGGCAACTTCGACGATAGGTA
CTTCTCAATCCGGTGGTCTGCACCCACTCGGGATTGATTACCCGGTGAAC
TTAGCTTCTTTGTGTTTGTAA