Gcaud199.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud199.t1
Unique Name	Gcaud199.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1898_length_7812_cov_5.919700	contig	NODE_1898_length_7812_cov_5.919700:3758..5608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud199	Gcaud199	Gracilaria caudata M_176_S67 male	gene	NODE_1898_length_7812_cov_5.919700 3758..5608 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud199.t1	Gcaud199.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1898_length_7812_cov_5.919700 3758..5608 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud199.t1.start1	Gcaud199.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1898_length_7812_cov_5.919700 3758..3760 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud199.t1.CDS1	Gcaud199.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1898_length_7812_cov_5.919700 3758..4123 +
Gcaud199.t1.CDS2	Gcaud199.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1898_length_7812_cov_5.919700 5246..5608 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud199.t1.exon1	Gcaud199.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1898_length_7812_cov_5.919700 3758..4123 +
Gcaud199.t1.exon2	Gcaud199.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1898_length_7812_cov_5.919700 5246..5608 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud199.t1.intron1	Gcaud199.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1898_length_7812_cov_5.919700 4124..5245 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud199.t1.stop1	Gcaud199.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1898_length_7812_cov_5.919700 5606..5608 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1898_length_7812_cov_5.919700:3758..5608+
coding sequence from alignment at NODE_1898_length_7812_cov_5.919700:3758..5608+

mRNA sequence

>Gcaud199.t1 ID=Gcaud199.t1|Name=Gcaud199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp
MASPSTQASNNETVLVSVRHPNGIDFQAYQRSNNPVNNRCFIIRNVHGEF
GNPVRVVCFIDLKVYCHGNTKQRIMTQLGLPAPSRRGRMQLTNEHLLEVM
AGDQLHVVLAPERDLEKVHVLGEKELISAFKEKFSRRVEVAFISEIGTTA
VSFNGNLESVLLLENQIVDTPSLESALRPSIDLLTDNVITSMEERFDEIK
YYTAAKTFTQLDISRDSYTSDDPTLAEVIKKLDEEESIVYDD*

spliced messenger RNA

>Gcaud199.t1 ID=Gcaud199.t1|Name=Gcaud199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:3758..5608+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAGTCCTTCCACACAAGCATCTAACAATGAAACTGTGCTTGTTTC
AGTTCGCCATCCAAATGGCATAGATTTTCAGGCGTACCAGAGGTCAAACA
ATCCGGTAAACAATCGTTGCTTCATAATCAGAAATGTGCACGGTGAGTTT
GGAAATCCCGTGAGAGTGGTTTGCTTCATTGATCTGAAAGTTTACTGTCA
TGGAAACACAAAACAAAGAATTATGACGCAACTGGGGTTGCCCGCGCCCT
CAAGACGGGGGCGTATGCAGCTTACAAATGAGCATCTGCTTGAAGTTATG
GCTGGAGATCAACTGCACGTTGTGCTTGCTCCGGAAAGAGACTTGGAAAA
GGTGCATGTATTGGGCGAGAAAGAGTTGATAAGTGCCTTCAAGGAGAAAT
TCTCCAGGCGCGTTGAAGTGGCCTTCATCAGTGAGATTGGAACCACTGCG
GTGTCCTTCAATGGAAACTTGGAATCTGTTTTGCTTCTAGAGAACCAGAT
CGTAGACACGCCGAGTTTAGAGTCTGCTCTGCGTCCCTCTATTGATCTTC
TGACTGATAATGTTATCACCTCGATGGAAGAGAGGTTCGATGAGATTAAG
TACTATACTGCTGCGAAAACGTTCACGCAGTTGGATATCTCGCGTGATAG
CTACACCAGTGATGATCCCACTTTGGCCGAAGTGATCAAGAAGCTGGACG
AGGAAGAGAGCATTGTCTATGACGACTAA

protein sequence of Gcaud199.t1

>Gcaud199.t1 ID=Gcaud199.t1|Name=Gcaud199.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MASPSTQASNNETVLVSVRHPNGIDFQAYQRSNNPVNNRCFIIRNVHGEF
GNPVRVVCFIDLKVYCHGNTKQRIMTQLGLPAPSRRGRMQLTNEHLLEVM
AGDQLHVVLAPERDLEKVHVLGEKELISAFKEKFSRRVEVAFISEIGTTA
VSFNGNLESVLLLENQIVDTPSLESALRPSIDLLTDNVITSMEERFDEIK
YYTAAKTFTQLDISRDSYTSDDPTLAEVIKKLDEEESIVYDD*

mRNA from alignment at NODE_1898_length_7812_cov_5.919700:3758..5608+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud199.t1 ID=Gcaud199.t1|Name=Gcaud199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:3758..5608+ (Gracilaria caudata M_176_S67 male)
ATGGCTAGTCCTTCCACACAAGCATCTAACAATGAAACTGTGCTTGTTTC
AGTTCGCCATCCAAATGGCATAGATTTTCAGGCGTACCAGAGGTCAAACA
ATCCGGTAAACAATCGTTGCTTCATAATCAGAAATGTGCACGGTGAGTTT
GGAAATCCCGTGAGAGTGGTTTGCTTCATTGATCTGAAAGTTTACTGTCA
TGGAAACACAAAACAAAGAATTATGACGCAACTGGGGTTGCCCGCGCCCT
CAAGACGGGGGCGTATGCAGCTTACAAATGAGCATCTGCTTGAAGTTATG
GCTGGAGATCAACTGCACGTTGTGCTTGCTCCGGAAAGAGACTTGGAAAA
GGTGCATGTATTGGGCGTGATCGACGAGGCCACATATCGTTGTACCCATG
AATTTGGAATATATGGCAGAAGGTGGGTACTGGAGAACCACTACAGCGAG
TTGCAAGAGGTAATACCCTAATGTATACGTTTTAAGGAAGCTGCCGTTGA
AGTGCAGCGTGACGTAGGCGACTGGCGATGCGGAGGGAAACGCGAGACAG
ACCTCGACGACATCAGGACCGAGTTCGCGCTGATAGTGTGGACACGGGAG
CGCGTCAATGGCGAAGGAGACACTTCGGCTCGGCCAATCATGACGTGTTA
AGTGACATTTGATTGGCCAAGCTTGTCGTGCGACGTGGCCAGGCGTTCGT
GTTGTCCTGTGTCGTGATCGAGATGACGGCCAGCTCATCGAACACGTGTG
GGAAATCTCAAGATTTGAGAAGGGGGTTTGCTCGGAAACTATCTATAATA
TCGGCGCGCTCTTCACGGCATTCGTGCCACCTCCATGCCTCCGTTTACCT
CGCAATTGCGGTACGTAATCATAATTTGTTGTATGTATGAGGACGAGAAA
TTCCTGCATACGCATATCACATACACTGCGTCTTCAATAACGATCGAAGA
ACGCACGTTATTCATCGCTCGCACAACTTTGGCAACGCCGCAATGTTTTT
GCCACTTAGAAATATATGAGAGAAAGAACACAAAACGCAAGCGCGATTCG
GTGGGTCGTCATCAGTGCTACTCAGTTTCGTGTTCCCATGGGTTCACCTG
TATTCTCTTTCATGTAAATGCCTCAAGGGCGAGGCACATCCTGACATCAG
CCGATTGTGGTTGTCGTGAGTCATGACTCGTAACAAATGACATTCATACC
AAATCTTCACGTTATCGTTCGTCCCCTCCACTGGAAAAGGCCACTGAATA
CAATACAAAAGCCCAGTCCGACCGTCAACCATCTCGAGCTGGAGCATCTC
AACACCTCTCTTGACTTCAAAGACTTCGAACGTAAATTTGACAACCTTCC
TTCTTGTTCACTAGAACATCATGTCGATCGAAGGTGGACTTGAAGGTAGT
AAGGACGGCAGGAACTGTAATGTCCTTGGCAGGTTTCTTTGCTGATTACA
TTGTGGCGATTATTGCTTCCATCGAGAGTGCCTAGCAGGAGAAAGAGTTG
ATAAGTGCCTTCAAGGAGAAATTCTCCAGGCGCGTTGAAGTGGCCTTCAT
CAGTGAGATTGGAACCACTGCGGTGTCCTTCAATGGAAACTTGGAATCTG
TTTTGCTTCTAGAGAACCAGATCGTAGACACGCCGAGTTTAGAGTCTGCT
CTGCGTCCCTCTATTGATCTTCTGACTGATAATGTTATCACCTCGATGGA
AGAGAGGTTCGATGAGATTAAGTACTATACTGCTGCGAAAACGTTCACGC
AGTTGGATATCTCGCGTGATAGCTACACCAGTGATGATCCCACTTTGGCC
GAAGTGATCAAGAAGCTGGACGAGGAAGAGAGCATTGTCTATGACGACTA
A

Coding sequence (CDS) from alignment at NODE_1898_length_7812_cov_5.919700:3758..5608+

>Gcaud199.t1 ID=Gcaud199.t1|Name=Gcaud199.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=729bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:3758..5608+ (Gracilaria caudata M_176_S67 male)
ATGGCTAGTCCTTCCACACAAGCATCTAACAATGAAACTGTGCTTGTTTC
AGTTCGCCATCCAAATGGCATAGATTTTCAGGCGTACCAGAGGTCAAACA
ATCCGGTAAACAATCGTTGCTTCATAATCAGAAATGTGCACGGTGAGTTT
GGAAATCCCGTGAGAGTGGTTTGCTTCATTGATCTGAAAGTTTACTGTCA
TGGAAACACAAAACAAAGAATTATGACGCAACTGGGGTTGCCCGCGCCCT
CAAGACGGGGGCGTATGCAGCTTACAAATGAGCATCTGCTTGAAGTTATG
GCTGGAGATCAACTGCACGTTGTGCTTGCTCCGGAAAGAGACTTGGAAAA
GGTGCATGTATTGGGCGAGAAAGAGTTGATAAGTGCCTTCAAGGAGAAAT
TCTCCAGGCGCGTTGAAGTGGCCTTCATCAGTGAGATTGGAACCACTGCG
GTGTCCTTCAATGGAAACTTGGAATCTGTTTTGCTTCTAGAGAACCAGAT
CGTAGACACGCCGAGTTTAGAGTCTGCTCTGCGTCCCTCTATTGATCTTC
TGACTGATAATGTTATCACCTCGATGGAAGAGAGGTTCGATGAGATTAAG
TACTATACTGCTGCGAAAACGTTCACGCAGTTGGATATCTCGCGTGATAG
CTACACCAGTGATGATCCCACTTTGGCCGAAGTGATCAAGAAGCTGGACG
AGGAAGAGAGCATTGTCTATGACGACTAA