Gcaud1304.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1304.t1
Unique NameGcaud1304.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length91
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1882_length_7904_cov_4.729809contigNODE_1882_length_7904_cov_4.729809:439..775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1304Gcaud1304Gracilaria caudata M_176_S67 malegeneNODE_1882_length_7904_cov_4.729809 439..775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1304.t1Gcaud1304.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1882_length_7904_cov_4.729809 439..775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1304.t1.CDS1Gcaud1304.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1882_length_7904_cov_4.729809 439..535 +
Gcaud1304.t1.CDS2Gcaud1304.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1882_length_7904_cov_4.729809 600..775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1304.t1.exon1Gcaud1304.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1882_length_7904_cov_4.729809 439..535 +
Gcaud1304.t1.exon2Gcaud1304.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1882_length_7904_cov_4.729809 600..775 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1304.t1.intron1Gcaud1304.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1882_length_7904_cov_4.729809 536..599 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1304.t1.stop1Gcaud1304.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1882_length_7904_cov_4.729809 773..775 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1304.t1 ID=Gcaud1304.t1|Name=Gcaud1304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=91bp
FTILSEQLQGYRKKNYRKYILKAIKDRESKCAGAYKTEVDPRLCLILMLA
EFEGHTLARLSPMGCTNSDSIEIRKQATDAAPLRNLVHDW*
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spliced messenger RNA

>Gcaud1304.t1 ID=Gcaud1304.t1|Name=Gcaud1304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=273bp|location=Sequence derived from alignment at NODE_1882_length_7904_cov_4.729809:439..775+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTCACAATACTTTCTGAGCAACTACAAGGTTATAGAAAGAAAAACTACCG
AAAATATATCTTGAAGGCGATCAAAGATCGTGAATCGAAGTGTGCAGGTG
CGTACAAGACCGAAGTCGACCCTCGTTTATGCTTGATTCTGATGCTGGCT
GAATTTGAAGGACACACTCTGGCGAGGCTCAGTCCAATGGGCTGCACGAA
TAGCGATTCCATCGAGATACGAAAGCAAGCAACTGATGCTGCACCGTTGC
GCAACTTGGTACACGACTGGTGA
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protein sequence of Gcaud1304.t1

>Gcaud1304.t1 ID=Gcaud1304.t1|Name=Gcaud1304.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=91bp
FTILSEQLQGYRKKNYRKYILKAIKDRESKCAGAYKTEVDPRLCLILMLA
EFEGHTLARLSPMGCTNSDSIEIRKQATDAAPLRNLVHDW*
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mRNA from alignment at NODE_1882_length_7904_cov_4.729809:439..775+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1304.t1 ID=Gcaud1304.t1|Name=Gcaud1304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=337bp|location=Sequence derived from alignment at NODE_1882_length_7904_cov_4.729809:439..775+ (Gracilaria caudata M_176_S67 male)
TTCACAATACTTTCTGAGCAACTACAAGGTTATAGAAAGAAAAACTACCG
AAAATATATCTTGAAGGCGATCAAAGATCGTGAATCGAAGTGTGCAGGTA
AGCTTCACACAATGTCTATATGGAAAAAATGCTTTATACTTCTAACTCTA
CCAGAATTTAGGTGCGTACAAGACCGAAGTCGACCCTCGTTTATGCTTGA
TTCTGATGCTGGCTGAATTTGAAGGACACACTCTGGCGAGGCTCAGTCCA
ATGGGCTGCACGAATAGCGATTCCATCGAGATACGAAAGCAAGCAACTGA
TGCTGCACCGTTGCGCAACTTGGTACACGACTGGTGA
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Coding sequence (CDS) from alignment at NODE_1882_length_7904_cov_4.729809:439..775+

>Gcaud1304.t1 ID=Gcaud1304.t1|Name=Gcaud1304.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=273bp|location=Sequence derived from alignment at NODE_1882_length_7904_cov_4.729809:439..775+ (Gracilaria caudata M_176_S67 male)
TTCACAATACTTTCTGAGCAACTACAAGGTTATAGAAAGAAAAACTACCG
AAAATATATCTTGAAGGCGATCAAAGATCGTGAATCGAAGTGTGCAGGTG
CGTACAAGACCGAAGTCGACCCTCGTTTATGCTTGATTCTGATGCTGGCT
GAATTTGAAGGACACACTCTGGCGAGGCTCAGTCCAATGGGCTGCACGAA
TAGCGATTCCATCGAGATACGAAAGCAAGCAACTGATGCTGCACCGTTGC
GCAACTTGGTACACGACTGGTGA
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