Gcaud2474.t3 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2474.t3
Unique Name	Gcaud2474.t3
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	439

Homology

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BLAST of Gcaud2474.t3 vs. uniprot
Match: A0A2V3J199_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J199_9FLOR)

HSP 1 Score: 321 bits (823), Expect = 3.420e-101
Identity = 157/210 (74.76%), Postives = 186/210 (88.57%), Query Frame = 0

Query:  229 ESESGEPVSDSDSMGDELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG 438
            +SE+ EPVS++DS  +E  RTPS K+ +LGNLACSSRDQN +ALL+HAVQQL RY+IVSYNAE+++ L AYIIGK T+RGWG+LQALVSGV LVS+NWLS SISEGKWVPM+ FRSDRFGQSPRSV  A E   KLLDGLR+RV+S +KDA+SIRK++RLCGARLAETRVD+VINDSK+KV+ CPNVQKKWLADSIE+GVPL+YEPY +G
Sbjct:  342 DSENDEPVSENDSCDEETVRTPSFKMQLLGNLACSSRDQNTQALLEHAVQQLRRYNIVSYNAETSSPLIAYIIGKETRRGWGVLQALVSGVALVSDNWLSSSISEGKWVPMDDFRSDRFGQSPRSVNSAAEGPAKLLDGLRVRVISNDKDAASIRKVVRLCGARLAETRVDVVINDSKKKVEGCPNVQKKWLADSIESGVPLDYEPYLIG 551

[Close]

BLAST of Gcaud2474.t3 vs. uniprot
Match: R7QDD6_CHOCR (BRCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDD6_CHOCR)

HSP 1 Score: 253 bits (646), Expect = 3.580e-79
Identity = 132/211 (62.56%), Postives = 162/211 (76.78%), Query Frame = 0

Query:  226 VDDESESGEPVSDSDSMGDELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSV-AGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPY 435
            V D  +  E  SDSD    E+ARTP+ K AILG LACSSRD NA ALL+HAVQQLG+Y I+SY  ES   + AYI+GK TKRGWGLLQA+  GVPLVSE+WLS SISEGKW  MN FRSD+FGQSPRSV AGA   R  +L+G RI+++S +KDA+SIRK+++LCG R+AETR+D+VIND    +  C NV+KKWLADS+EAG  +++E Y
Sbjct:    3 VPDSEDDQECSSDSDEEMGEVARTPA-KQAILGRLACSSRDGNASALLEHAVQQLGKYEIISYGPESEGEIKAYIVGKETKRGWGLLQAIACGVPLVSEDWLSSSISEGKWKAMNVFRSDQFGQSPRSVEAGATTVR--ILEGQRIKILSDKKDAASIRKLVKLCGGRIAETRMDVVINDGAHVLGGCANVEKKWLADSVEAGEVMDFEGY 210

The following BLAST results are available for this feature:

BLAST of Gcaud2474.t3 vs. uniprot

BLAST of Gcaud2474.t3 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J199_9FLOR	3.420e-101	74.76	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QDD6_CHOCR	3.580e-79	62.56	BRCT domain-containing protein n=1 Tax=Chondrus cr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 258..351 e-value: 2.5E-8 score: 36.2
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 355..435 e-value: 8.5E-6 score: 27.7
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 306..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..144
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 360..437 score: 9.94556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1056_length_14488_cov_4.591929	contig	NODE_1056_length_14488_cov_4.591929:6756..8327 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t3	Gcaud2474.t3	Gracilaria caudata M_176_S67 male	mRNA	NODE_1056_length_14488_cov_4.591929 6756..8327 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2474.t3 ID=Gcaud2474.t3|Name=Gcaud2474.t3|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MIRAKTSDKISHKKPNEQKSTDKASRTVHLITDSDHSDDEHQADPPVDFG
EEEEDEEEQATEKSKEGTTAQPKDPDLMDFEDEDKVADKSSKADQGERKE
TGKKKKGAGASQSPKKTKKAKTKELSPSKTIKKSKVDLKSKSKVAKGKQT
ASKKATQAGKTKEKPSNPSKPSIPEPAAKATKEEQPSKNSAKNKPLPAGK
KVAKKSKAAKKKQDEEKEESETTGHVDDESESGEPVSDSDSMGDELARTP
SSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYI
IGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQS
PRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDL
VINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036420	BRCT_dom_sf
IPR001357	BRCT_dom