Gcaud2474.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2474.t2
Unique NameGcaud2474.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length475
Homology
BLAST of Gcaud2474.t2 vs. uniprot
Match: A0A2V3J199_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J199_9FLOR)

HSP 1 Score: 325 bits (834), Expect = 2.510e-102
Identity = 279/565 (49.38%), Postives = 329/565 (58.23%), Query Frame = 0
Query:    1 MTALNEALSDADTQEPVKTELQSHHIPESDDDDDVVMIRAKTSDKISHKKPNEQKSTDKASRTVHLI-TDSDHSDDEHQADPPVDFGEEEXXXXXQATEKSKEGTTAQPKDPD---LMDFEDE---------------DKVADKSSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAK-------ATKEEQXXXXXX--KNKPLPAGKKVAKXXXXXXXXXXXXXX---------------------------------------------------------------ESETTGHVDDESESGEPVSDSDSMGDELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG 474
            MTALNE+LSDADTQEPVK+EL S H+P+SDDD  V M   K             KS++KA+  +  I +DSDHSDDE   DPPVDFGEEE         + K  +  +PK  D   L    DE                K +D S   XXXXXXXXXXXX                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +K       A+K  Q        K+K L   K + K                                                                               + +  ++ +SE+ EPVS++DS  +E  RTPS K+ +LGNLACSSRDQN +ALL+HAVQQL RY+IVSYNAE+++ L AYIIGK T+RGWG+LQALVSGV LVS+NWLS SISEGKWVPM+ FRSDRFGQSPRSV  A E   KLLDGLR+RV+S +KDA+SIRK++RLCGARLAETRVD+VINDSK+KV+ CPNVQKKWLADSIE+GVPL+YEPY +G
Sbjct:    1 MTALNESLSDADTQEPVKSELNSRHVPDSDDDS-VDMAPVK-------------KSSEKAAAAIEPIHSDSDHSDDERTNDPPVDFGEEEEEDDFAPQNEKKNKSPVRPKQEDDSKLKGDADEKGNPCSSDTHRTKRHQKKSDGSRSPXXXXXXXXXXXXLSPSKAIKKVKLDSKTKPKPVKSKQPPSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPANTSKTKPLLRKASKPSQKAGTSAQQKSKSLKVKKAIDKDDATKEKKSPTSKKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDESAQMEIDSENDEPVSENDSCDEETVRTPSFKMQLLGNLACSSRDQNTQALLEHAVQQLRRYNIVSYNAETSSPLIAYIIGKETRRGWGVLQALVSGVALVSDNWLSSSISEGKWVPMDDFRSDRFGQSPRSVNSAAEGPAKLLDGLRVRVISNDKDAASIRKVVRLCGARLAETRVDVVINDSKKKVEGCPNVQKKWLADSIESGVPLDYEPYLIG 551          
BLAST of Gcaud2474.t2 vs. uniprot
Match: R7QDD6_CHOCR (BRCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDD6_CHOCR)

HSP 1 Score: 253 bits (646), Expect = 1.030e-78
Identity = 132/211 (62.56%), Postives = 162/211 (76.78%), Query Frame = 0
Query:  262 VDDESESGEPVSDSDSMGDELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSV-AGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPY 471
            V D  +  E  SDSD    E+ARTP+ K AILG LACSSRD NA ALL+HAVQQLG+Y I+SY  ES   + AYI+GK TKRGWGLLQA+  GVPLVSE+WLS SISEGKW  MN FRSD+FGQSPRSV AGA   R  +L+G RI+++S +KDA+SIRK+++LCG R+AETR+D+VIND    +  C NV+KKWLADS+EAG  +++E Y
Sbjct:    3 VPDSEDDQECSSDSDEEMGEVARTPA-KQAILGRLACSSRDGNASALLEHAVQQLGKYEIISYGPESEGEIKAYIVGKETKRGWGLLQAIACGVPLVSEDWLSSSISEGKWKAMNVFRSDQFGQSPRSVEAGATTVR--ILEGQRIKILSDKKDAASIRKLVKLCGGRIAETRMDVVINDGAHVLGGCANVEKKWLADSVEAGEVMDFEGY 210          
The following BLAST results are available for this feature:
BLAST of Gcaud2474.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J199_9FLOR2.510e-10249.38Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDD6_CHOCR1.030e-7862.56BRCT domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 294..387
e-value: 2.9E-8
score: 36.0
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 391..471
e-value: 9.6E-6
score: 27.5
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 342..473
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..286
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 396..473
score: 9.94556

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1056_length_14488_cov_4.591929contigNODE_1056_length_14488_cov_4.591929:6756..8435 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2474.t2Gcaud2474.t2Gracilaria caudata M_176_S67 malemRNANODE_1056_length_14488_cov_4.591929 6756..8435 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2474.t2 ID=Gcaud2474.t2|Name=Gcaud2474.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MTALNEALSDADTQEPVKTELQSHHIPESDDDDDVVMIRAKTSDKISHKK
PNEQKSTDKASRTVHLITDSDHSDDEHQADPPVDFGEEEEDEEEQATEKS
KEGTTAQPKDPDLMDFEDEDKVADKSSKADQGERKETGKKKKGAGASQSP
KKTKKAKTKELSPSKTIKKSKVDLKSKSKVAKGKQTASKKATQAGKTKEK
PSNPSKPSIPEPAAKATKEEQPSKNSAKNKPLPAGKKVAKKSKAAKKKQD
EEKEESETTGHVDDESESGEPVSDSDSMGDELARTPSSKLAILGNLACSS
RDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQA
LVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSVAGAEEARGKL
LDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPN
VQKKWLADSIEAGVPLEYEPYSLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom