Gcaud3682.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3682.t1
Unique Name	Gcaud3682.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	371

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_186_length_39306_cov_4.151447	contig	NODE_186_length_39306_cov_4.151447:23250..24478 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3682	Gcaud3682	Gracilaria caudata M_176_S67 male	gene	NODE_186_length_39306_cov_4.151447 23250..24478 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3682.t1	Gcaud3682.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_186_length_39306_cov_4.151447 23250..24478 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3682.t1.stop1	Gcaud3682.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_186_length_39306_cov_4.151447 23250..23252 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3682.t1.CDS1	Gcaud3682.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_186_length_39306_cov_4.151447 23250..23268 -
Gcaud3682.t1.CDS2	Gcaud3682.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_186_length_39306_cov_4.151447 23385..24478 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3682.t1.exon1	Gcaud3682.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_186_length_39306_cov_4.151447 23250..23268 -
Gcaud3682.t1.exon2	Gcaud3682.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_186_length_39306_cov_4.151447 23385..24478 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3682.t1.intron1	Gcaud3682.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_186_length_39306_cov_4.151447 23269..23384 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3682.t1.start1	Gcaud3682.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_186_length_39306_cov_4.151447 24476..24478 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_186_length_39306_cov_4.151447:23250..24478-
coding sequence from alignment at NODE_186_length_39306_cov_4.151447:23250..24478-

mRNA sequence

>Gcaud3682.t1 ID=Gcaud3682.t1|Name=Gcaud3682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=371bp
MSSSSRSKSISILVHPNDLRGANHNGMRKANRFARRASFRIWRRVSVEAA
PGLVRDRIFYAPDETHVPDDPARTPTEFIKGTSDAPNVVHQGDDFEISFA
GMNVSPQDWFACNKNELFLYSLTNGGEGSQCTWAQRIQSERNGTINMESG
YLVSPRRATDLNSPRLQKVNSLNSNIGFVNPNDVPFIHYDPLRDGRRDGT
VPNSYVTIPASRSLYKQFKSNEKSAVSDGDEQDTSVRFNVLDLDNISDDQ
LQVISGITQLGELVEKGAVAVPYAQLVAGAFEAVAALGKRGLQKYSTPDH
VLSVDMRFRLAEPVKPEGRSESSAEKRAVETAPCKNGNYLRYGYYFFLEK
SVDARLYSQTRSSSQLFTEC*

spliced messenger RNA

>Gcaud3682.t1 ID=Gcaud3682.t1|Name=Gcaud3682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:23250..24478- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTTCTTCACGGAGCAAGTCTATCTCTATTCTTGTCCATCCAAA
CGACCTCCGCGGTGCAAACCATAATGGTATGCGCAAAGCAAATCGTTTTG
CGCGAAGGGCAAGCTTTCGAATTTGGCGCCGCGTTTCCGTCGAGGCTGCA
CCAGGTCTAGTGCGTGACAGAATCTTTTACGCTCCCGATGAAACCCATGT
TCCCGATGACCCTGCAAGAACTCCAACTGAATTCATCAAGGGAACTTCAG
ACGCACCCAATGTAGTTCACCAAGGCGATGACTTCGAAATATCGTTCGCG
GGAATGAATGTGAGCCCACAGGACTGGTTTGCATGCAACAAAAACGAGCT
CTTCCTCTATAGTCTCACTAACGGTGGTGAAGGCTCTCAGTGCACATGGG
CCCAAAGGATACAATCGGAGAGGAACGGCACTATAAACATGGAAAGTGGA
TACTTGGTTTCACCGAGACGGGCGACCGACCTAAATTCGCCAAGGCTGCA
AAAAGTGAATTCACTTAACTCCAACATAGGCTTTGTAAATCCGAACGACG
TGCCCTTCATTCACTACGACCCTCTGCGAGATGGTCGAAGAGATGGGACC
GTGCCAAATTCGTACGTGACCATTCCGGCTTCGAGGTCCTTGTACAAACA
GTTTAAATCGAATGAAAAAAGTGCGGTATCAGACGGAGATGAGCAGGATA
CGTCAGTGCGATTCAACGTGCTGGATTTAGACAATATTAGCGACGACCAG
CTTCAGGTTATATCGGGTATTACACAGCTTGGCGAACTAGTCGAGAAGGG
TGCTGTTGCTGTTCCGTACGCTCAGTTAGTTGCAGGTGCGTTTGAGGCAG
TTGCGGCACTTGGTAAGCGAGGTCTTCAGAAGTACTCTACACCTGATCAT
GTTCTTTCCGTAGACATGCGGTTTCGATTGGCAGAACCAGTGAAGCCAGA
AGGTCGAAGTGAATCGAGTGCTGAGAAACGTGCTGTTGAGACGGCTCCAT
GCAAAAATGGAAACTATTTGAGATATGGATACTACTTCTTCCTCGAAAAA
AGCGTGGACGCGAGATTGTACTCACAAACTCGTTCGTCCTCACAGTTGTT
CACAGAATGTTGA

protein sequence of Gcaud3682.t1

>Gcaud3682.t1 ID=Gcaud3682.t1|Name=Gcaud3682.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=371bp
MSSSSRSKSISILVHPNDLRGANHNGMRKANRFARRASFRIWRRVSVEAA
PGLVRDRIFYAPDETHVPDDPARTPTEFIKGTSDAPNVVHQGDDFEISFA
GMNVSPQDWFACNKNELFLYSLTNGGEGSQCTWAQRIQSERNGTINMESG
YLVSPRRATDLNSPRLQKVNSLNSNIGFVNPNDVPFIHYDPLRDGRRDGT
VPNSYVTIPASRSLYKQFKSNEKSAVSDGDEQDTSVRFNVLDLDNISDDQ
LQVISGITQLGELVEKGAVAVPYAQLVAGAFEAVAALGKRGLQKYSTPDH
VLSVDMRFRLAEPVKPEGRSESSAEKRAVETAPCKNGNYLRYGYYFFLEK
SVDARLYSQTRSSSQLFTEC*

mRNA from alignment at NODE_186_length_39306_cov_4.151447:23250..24478-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3682.t1 ID=Gcaud3682.t1|Name=Gcaud3682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1229bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:23250..24478- (Gracilaria caudata M_176_S67 male)
ATGTCTTCTTCTTCACGGAGCAAGTCTATCTCTATTCTTGTCCATCCAAA
CGACCTCCGCGGTGCAAACCATAATGGTATGCGCAAAGCAAATCGTTTTG
CGCGAAGGGCAAGCTTTCGAATTTGGCGCCGCGTTTCCGTCGAGGCTGCA
CCAGGTCTAGTGCGTGACAGAATCTTTTACGCTCCCGATGAAACCCATGT
TCCCGATGACCCTGCAAGAACTCCAACTGAATTCATCAAGGGAACTTCAG
ACGCACCCAATGTAGTTCACCAAGGCGATGACTTCGAAATATCGTTCGCG
GGAATGAATGTGAGCCCACAGGACTGGTTTGCATGCAACAAAAACGAGCT
CTTCCTCTATAGTCTCACTAACGGTGGTGAAGGCTCTCAGTGCACATGGG
CCCAAAGGATACAATCGGAGAGGAACGGCACTATAAACATGGAAAGTGGA
TACTTGGTTTCACCGAGACGGGCGACCGACCTAAATTCGCCAAGGCTGCA
AAAAGTGAATTCACTTAACTCCAACATAGGCTTTGTAAATCCGAACGACG
TGCCCTTCATTCACTACGACCCTCTGCGAGATGGTCGAAGAGATGGGACC
GTGCCAAATTCGTACGTGACCATTCCGGCTTCGAGGTCCTTGTACAAACA
GTTTAAATCGAATGAAAAAAGTGCGGTATCAGACGGAGATGAGCAGGATA
CGTCAGTGCGATTCAACGTGCTGGATTTAGACAATATTAGCGACGACCAG
CTTCAGGTTATATCGGGTATTACACAGCTTGGCGAACTAGTCGAGAAGGG
TGCTGTTGCTGTTCCGTACGCTCAGTTAGTTGCAGGTGCGTTTGAGGCAG
TTGCGGCACTTGGTAAGCGAGGTCTTCAGAAGTACTCTACACCTGATCAT
GTTCTTTCCGTAGACATGCGGTTTCGATTGGCAGAACCAGTGAAGCCAGA
AGGTCGAAGTGAATCGAGTGCTGAGAAACGTGCTGTTGAGACGGCTCCAT
GCAAAAATGGAAACTATTTGAGATATGGATACTACTTCTTCCTCGAAAAA
AGCGTGGACGCGAGATTGTACTCACAAACTCGTTCGTCCTCACAGTATGT
CCCTCTTCTTCTGAGAAGGACAGATTTGAGAAGAAGCAAACGAAGAAGAA
ATGATCTAGAATTCTTTCCGCTCACCAATGTGAGTTACGTTGTGATGCGA
GTTTCACCAGGTTGTTCACAGAATGTTGA

Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:23250..24478-

>Gcaud3682.t1 ID=Gcaud3682.t1|Name=Gcaud3682.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1113bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:23250..24478- (Gracilaria caudata M_176_S67 male)
ATGTCTTCTTCTTCACGGAGCAAGTCTATCTCTATTCTTGTCCATCCAAA
CGACCTCCGCGGTGCAAACCATAATGGTATGCGCAAAGCAAATCGTTTTG
CGCGAAGGGCAAGCTTTCGAATTTGGCGCCGCGTTTCCGTCGAGGCTGCA
CCAGGTCTAGTGCGTGACAGAATCTTTTACGCTCCCGATGAAACCCATGT
TCCCGATGACCCTGCAAGAACTCCAACTGAATTCATCAAGGGAACTTCAG
ACGCACCCAATGTAGTTCACCAAGGCGATGACTTCGAAATATCGTTCGCG
GGAATGAATGTGAGCCCACAGGACTGGTTTGCATGCAACAAAAACGAGCT
CTTCCTCTATAGTCTCACTAACGGTGGTGAAGGCTCTCAGTGCACATGGG
CCCAAAGGATACAATCGGAGAGGAACGGCACTATAAACATGGAAAGTGGA
TACTTGGTTTCACCGAGACGGGCGACCGACCTAAATTCGCCAAGGCTGCA
AAAAGTGAATTCACTTAACTCCAACATAGGCTTTGTAAATCCGAACGACG
TGCCCTTCATTCACTACGACCCTCTGCGAGATGGTCGAAGAGATGGGACC
GTGCCAAATTCGTACGTGACCATTCCGGCTTCGAGGTCCTTGTACAAACA
GTTTAAATCGAATGAAAAAAGTGCGGTATCAGACGGAGATGAGCAGGATA
CGTCAGTGCGATTCAACGTGCTGGATTTAGACAATATTAGCGACGACCAG
CTTCAGGTTATATCGGGTATTACACAGCTTGGCGAACTAGTCGAGAAGGG
TGCTGTTGCTGTTCCGTACGCTCAGTTAGTTGCAGGTGCGTTTGAGGCAG
TTGCGGCACTTGGTAAGCGAGGTCTTCAGAAGTACTCTACACCTGATCAT
GTTCTTTCCGTAGACATGCGGTTTCGATTGGCAGAACCAGTGAAGCCAGA
AGGTCGAAGTGAATCGAGTGCTGAGAAACGTGCTGTTGAGACGGCTCCAT
GCAAAAATGGAAACTATTTGAGATATGGATACTACTTCTTCCTCGAAAAA
AGCGTGGACGCGAGATTGTACTCACAAACTCGTTCGTCCTCACAGTTGTT
CACAGAATGTTGA