Gcaud2476.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2476.t1
Unique Name	Gcaud2476.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1056_length_14488_cov_4.591929	contig	NODE_1056_length_14488_cov_4.591929:10613..11698 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707708.1
PFAMs	CDC50
Max annot lvl	2759\|Eukaryota
GOs	GO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008150,GO:0010008,GO:0010876,GO:0012505,GO:0015711,GO:0015748,GO:0015914,GO:0016020,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0033036,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827
Evalue	2.06e-57
EggNOG OGs	COG5035@1\|root,KOG2952@2759\|Eukaryota
Description	aminophospholipid transmembrane transporter activity
COG category	DKT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2476	Gcaud2476	Gracilaria caudata M_176_S67 male	gene	NODE_1056_length_14488_cov_4.591929 10613..11698 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2476.t1.start1	Gcaud2476.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1056_length_14488_cov_4.591929 10613..10615 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2476.t1.CDS1	Gcaud2476.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1056_length_14488_cov_4.591929 10613..11698 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2476.t1.exon1	Gcaud2476.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1056_length_14488_cov_4.591929 10613..11698 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2476.t1.stop1	Gcaud2476.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1056_length_14488_cov_4.591929 11696..11698 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2476.t1	Gcaud2476.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1056_length_14488_cov_4.591929 10613..11698 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1056_length_14488_cov_4.591929:10613..11698+
coding sequence from alignment at NODE_1056_length_14488_cov_4.591929:10613..11698+

mRNA sequence

>Gcaud2476.t1 ID=Gcaud2476.t1|Name=Gcaud2476.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp
MSAEPTVPQRSEALSTSTRASEYLAEVAEDDERPVRCAKFRQQELWAWKP
VWTPRVVFIMYFIVAAIFLPLGAVIFVQSSRMESTPRYRYDNRGSCDIGG
ISSTETVGTCRLSIDIERKLEAPSYFYYGLVNFYQNARTYVTSRSDEQLR
GTNNPDVSTCEPLIDKPGTDQTLVPCGLVANSQFNDTLQLCFDPSCNEPV
DLDGTGIAWDVDRETRFLGNNETFDDEQNERIRSEDFMVWMRLAAYRNWK
KLYRIIRTDLEPGRYYVQIESRFPVSSFNGEKFFFISETTWFGGPNRTMG
IAYIVVGGVALILALAIMVRSRTTPDLDLPPETTVDLGELVSPSDIQKAP
IVVEAPGDRNA*

spliced messenger RNA

>Gcaud2476.t1 ID=Gcaud2476.t1|Name=Gcaud2476.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:10613..11698+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCGAACCAACCGTCCCGCAACGCTCAGAAGCGCTATCAACATC
GACTCGAGCCTCGGAATATCTCGCTGAGGTTGCAGAGGACGATGAGAGGC
CAGTTCGATGCGCGAAGTTTCGACAACAAGAGCTGTGGGCATGGAAGCCT
GTGTGGACTCCACGCGTCGTCTTCATCATGTATTTCATAGTCGCTGCTAT
ATTCCTTCCTCTTGGTGCGGTTATATTCGTTCAGAGCTCACGTATGGAGA
GCACCCCACGGTATCGCTACGATAACAGAGGTTCTTGCGACATTGGGGGC
ATTTCGTCCACTGAGACAGTAGGAACTTGCAGGCTGAGTATTGATATTGA
AAGAAAACTGGAAGCACCATCATACTTCTACTATGGTCTCGTCAACTTTT
ATCAAAACGCTCGAACATACGTCACAAGTCGTTCCGATGAGCAACTACGC
GGCACAAACAATCCAGACGTCTCTACGTGCGAACCACTTATAGACAAGCC
CGGAACAGACCAGACACTTGTGCCTTGCGGTCTCGTCGCGAATTCTCAAT
TTAACGATACTCTACAGTTGTGCTTTGACCCATCGTGCAACGAGCCAGTG
GATCTGGACGGCACTGGCATTGCATGGGATGTGGACCGGGAGACAAGGTT
TTTGGGTAACAACGAAACATTTGATGATGAACAAAACGAACGCATACGTA
GCGAGGATTTTATGGTTTGGATGCGACTTGCTGCTTATCGAAACTGGAAG
AAGTTGTACAGAATCATCCGCACGGATCTTGAACCTGGCAGGTACTATGT
ACAAATTGAATCTCGTTTTCCTGTGAGCTCCTTTAATGGAGAGAAGTTCT
TCTTCATCTCGGAGACCACGTGGTTCGGGGGTCCTAACAGAACAATGGGA
ATTGCCTATATAGTCGTTGGAGGCGTTGCACTTATTTTGGCGTTGGCAAT
AATGGTGCGTTCGAGAACAACCCCAGATCTAGATTTGCCTCCTGAAACAA
CTGTGGACCTTGGTGAGCTTGTTTCGCCGTCAGATATTCAAAAAGCCCCA
ATCGTAGTGGAGGCGCCTGGCGACCGGAACGCTTGA

protein sequence of Gcaud2476.t1

>Gcaud2476.t1 ID=Gcaud2476.t1|Name=Gcaud2476.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=362bp
MSAEPTVPQRSEALSTSTRASEYLAEVAEDDERPVRCAKFRQQELWAWKP
VWTPRVVFIMYFIVAAIFLPLGAVIFVQSSRMESTPRYRYDNRGSCDIGG
ISSTETVGTCRLSIDIERKLEAPSYFYYGLVNFYQNARTYVTSRSDEQLR
GTNNPDVSTCEPLIDKPGTDQTLVPCGLVANSQFNDTLQLCFDPSCNEPV
DLDGTGIAWDVDRETRFLGNNETFDDEQNERIRSEDFMVWMRLAAYRNWK
KLYRIIRTDLEPGRYYVQIESRFPVSSFNGEKFFFISETTWFGGPNRTMG
IAYIVVGGVALILALAIMVRSRTTPDLDLPPETTVDLGELVSPSDIQKAP
IVVEAPGDRNA*

mRNA from alignment at NODE_1056_length_14488_cov_4.591929:10613..11698+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2476.t1 ID=Gcaud2476.t1|Name=Gcaud2476.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:10613..11698+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCCGAACCAACCGTCCCGCAACGCTCAGAAGCGCTATCAACATC
GACTCGAGCCTCGGAATATCTCGCTGAGGTTGCAGAGGACGATGAGAGGC
CAGTTCGATGCGCGAAGTTTCGACAACAAGAGCTGTGGGCATGGAAGCCT
GTGTGGACTCCACGCGTCGTCTTCATCATGTATTTCATAGTCGCTGCTAT
ATTCCTTCCTCTTGGTGCGGTTATATTCGTTCAGAGCTCACGTATGGAGA
GCACCCCACGGTATCGCTACGATAACAGAGGTTCTTGCGACATTGGGGGC
ATTTCGTCCACTGAGACAGTAGGAACTTGCAGGCTGAGTATTGATATTGA
AAGAAAACTGGAAGCACCATCATACTTCTACTATGGTCTCGTCAACTTTT
ATCAAAACGCTCGAACATACGTCACAAGTCGTTCCGATGAGCAACTACGC
GGCACAAACAATCCAGACGTCTCTACGTGCGAACCACTTATAGACAAGCC
CGGAACAGACCAGACACTTGTGCCTTGCGGTCTCGTCGCGAATTCTCAAT
TTAACGATACTCTACAGTTGTGCTTTGACCCATCGTGCAACGAGCCAGTG
GATCTGGACGGCACTGGCATTGCATGGGATGTGGACCGGGAGACAAGGTT
TTTGGGTAACAACGAAACATTTGATGATGAACAAAACGAACGCATACGTA
GCGAGGATTTTATGGTTTGGATGCGACTTGCTGCTTATCGAAACTGGAAG
AAGTTGTACAGAATCATCCGCACGGATCTTGAACCTGGCAGGTACTATGT
ACAAATTGAATCTCGTTTTCCTGTGAGCTCCTTTAATGGAGAGAAGTTCT
TCTTCATCTCGGAGACCACGTGGTTCGGGGGTCCTAACAGAACAATGGGA
ATTGCCTATATAGTCGTTGGAGGCGTTGCACTTATTTTGGCGTTGGCAAT
AATGGTGCGTTCGAGAACAACCCCAGATCTAGATTTGCCTCCTGAAACAA
CTGTGGACCTTGGTGAGCTTGTTTCGCCGTCAGATATTCAAAAAGCCCCA
ATCGTAGTGGAGGCGCCTGGCGACCGGAACGCTTGA

Coding sequence (CDS) from alignment at NODE_1056_length_14488_cov_4.591929:10613..11698+

>Gcaud2476.t1 ID=Gcaud2476.t1|Name=Gcaud2476.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1086bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:10613..11698+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCCGAACCAACCGTCCCGCAACGCTCAGAAGCGCTATCAACATC
GACTCGAGCCTCGGAATATCTCGCTGAGGTTGCAGAGGACGATGAGAGGC
CAGTTCGATGCGCGAAGTTTCGACAACAAGAGCTGTGGGCATGGAAGCCT
GTGTGGACTCCACGCGTCGTCTTCATCATGTATTTCATAGTCGCTGCTAT
ATTCCTTCCTCTTGGTGCGGTTATATTCGTTCAGAGCTCACGTATGGAGA
GCACCCCACGGTATCGCTACGATAACAGAGGTTCTTGCGACATTGGGGGC
ATTTCGTCCACTGAGACAGTAGGAACTTGCAGGCTGAGTATTGATATTGA
AAGAAAACTGGAAGCACCATCATACTTCTACTATGGTCTCGTCAACTTTT
ATCAAAACGCTCGAACATACGTCACAAGTCGTTCCGATGAGCAACTACGC
GGCACAAACAATCCAGACGTCTCTACGTGCGAACCACTTATAGACAAGCC
CGGAACAGACCAGACACTTGTGCCTTGCGGTCTCGTCGCGAATTCTCAAT
TTAACGATACTCTACAGTTGTGCTTTGACCCATCGTGCAACGAGCCAGTG
GATCTGGACGGCACTGGCATTGCATGGGATGTGGACCGGGAGACAAGGTT
TTTGGGTAACAACGAAACATTTGATGATGAACAAAACGAACGCATACGTA
GCGAGGATTTTATGGTTTGGATGCGACTTGCTGCTTATCGAAACTGGAAG
AAGTTGTACAGAATCATCCGCACGGATCTTGAACCTGGCAGGTACTATGT
ACAAATTGAATCTCGTTTTCCTGTGAGCTCCTTTAATGGAGAGAAGTTCT
TCTTCATCTCGGAGACCACGTGGTTCGGGGGTCCTAACAGAACAATGGGA
ATTGCCTATATAGTCGTTGGAGGCGTTGCACTTATTTTGGCGTTGGCAAT
AATGGTGCGTTCGAGAACAACCCCAGATCTAGATTTGCCTCCTGAAACAA
CTGTGGACCTTGGTGAGCTTGTTTCGCCGTCAGATATTCAAAAAGCCCCA
ATCGTAGTGGAGGCGCCTGGCGACCGGAACGCTTGA