Gcaud7563.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7563.t1
Unique Name	Gcaud7563.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	354

Homology

[Close]

BLAST of Gcaud7563.t1 vs. uniprot
Match: R7Q204_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q204_CHOCR)

HSP 1 Score: 358 bits (918), Expect = 1.960e-119
Identity = 206/352 (58.52%), Postives = 253/352 (71.88%), Query Frame = 0

Query:    1 MYLNNIFEQVPSTDLANIPDPNVSTTFLPPP---DPSWTPVLHEEP-------DXXXXXXXXXXXXXXXXXXP-AGKRRKQELHRRHSKRYRDNLGELFTSLEQLLPRVVPGCKLKTKSQIIANSVNAIKHLRSEVSTLEIQYVLSSPANRTKWVEDTVHTALCFQDVVNPFMQLLLTMQRWKHSELWSRHEVNILADGTESRTPVPKPTESVHDLRSSSPKEFFLKLLNTSTMHELD-STLRATYQHFSDGARNQVKSVADNSLVGRVSSSLAPEVVNMRDTDSCSSFLRSQTAQECGFIVCFAVPFLVRGHVFAVVLFFDDQPRTSINQDLNVAQDLASSLGNCYGASSA 340
            MYLN++F+Q+        P     T   P P    P+  P  H +P       D XXXXXXXXXXXXXX   P  GK+RKQELHRRHSKRYRDNLGELF +LEQLLP+VVPGCKLKTKSQIIANSV A+K LR+EVS LE+Q+VLSSPANRTKWVEDTV  A CFQ V  PFM+LL+ +QRWKHSELW R+EVN+L DGT+S  PV  PT +VHDL   S K+FFLKL  T ++H++  ST+   Y+ FS  +        D+S+VGR +S L+PE +++RD ++C  F R + A++CGF  CFA+PFLVRGHVFA +LF+DDQ R     D+N+AQD+AS LGNCYGAS+A
Sbjct:    1 MYLNHLFQQIDGDQTQPPPLQTPVTASHPLPAHLSPTVPPDSHPKPTNDEAEYDEXXXXXXXXXXXXXXKPQPIVGKKRKQELHRRHSKRYRDNLGELFQNLEQLLPKVVPGCKLKTKSQIIANSVQAVKRLRTEVSALEMQFVLSSPANRTKWVEDTVQAATCFQAVTEPFMRLLVGIQRWKHSELWCRYEVNLLPDGTDSGAPVINPTNTVHDLGPLSSKKFFLKLDRTVSVHDITASTVPEAYRMFSKISHMATFVNGDDSIVGRTASKLSPEWIDLRDPEACHGFKRGEAARQCGFTTCFALPFLVRGHVFASILFYDDQQRFDAGPDINIAQDIASCLGNCYGASAA 352

[Close]

BLAST of Gcaud7563.t1 vs. uniprot
Match: R7Q8M0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8M0_CHOCR)

HSP 1 Score: 138 bits (347), Expect = 2.510e-36
Identity = 71/151 (47.02%), Postives = 105/151 (69.54%), Query Frame = 0

Query:  191 SRTPVPKPTESVHDLRSSSPKEFFLKLLNTSTMHELD-STLRATYQHFSDGARNQVKSVADNSLVGRVSSSLAPEVVNMRDTDSCSSFLRSQTAQECGFIVCFAVPFLVRGHVFAVVLFFDDQPRTSINQDLNVAQDLASSLGNCYGASSA 340
            S TP P P+ ++    +  P++ FLKL  T+++H++  ST+   ++ FS  +        DNS+VGR +S L+PE +++RD +SC  F R + A++CGF  CFA+PFLVRGHVFA +LF+DDQ R+ +  D+N+AQD+AS LGNCYGAS+A
Sbjct:    9 SSTP-PTPSTTL----ARCPRKSFLKLDITASVHDITASTIPKVFRMFSKISHMATFVNDDNSIVGRTASKLSPEWIDLRDPESCHGFKRGEAARQCGFTACFALPFLVRGHVFASILFYDDQQRSDVRPDINIAQDIASCLGNCYGASAA 154

The following BLAST results are available for this feature:

BLAST of Gcaud7563.t1 vs. uniprot

BLAST of Gcaud7563.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
R7Q204_CHOCR	1.960e-119	58.52	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
R7Q8M0_CHOCR	2.510e-36	47.02	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 50..134 e-value: 1.1E-6 score: 30.5
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 66..132
IPR029016	GAF-like domain superfamily	GENE3D	3.30.450.40		coord: 215..338 e-value: 7.5E-6 score: 27.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..76
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 287..309
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..286
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 310..353
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 68..121 score: 9.06393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1858_length_8045_cov_4.168972	contig	NODE_1858_length_8045_cov_4.168972:1524..2585 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7563.t1	Gcaud7563.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1858_length_8045_cov_4.168972 1524..2585 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7563.t1 ID=Gcaud7563.t1|Name=Gcaud7563.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=354bp
MYLNNIFEQVPSTDLANIPDPNVSTTFLPPPDPSWTPVLHEEPDDEQDDE
EEDEDDDQKRQTPAGKRRKQELHRRHSKRYRDNLGELFTSLEQLLPRVVP
GCKLKTKSQIIANSVNAIKHLRSEVSTLEIQYVLSSPANRTKWVEDTVHT
ALCFQDVVNPFMQLLLTMQRWKHSELWSRHEVNILADGTESRTPVPKPTE
SVHDLRSSSPKEFFLKLLNTSTMHELDSTLRATYQHFSDGARNQVKSVAD
NSLVGRVSSSLAPEVVNMRDTDSCSSFLRSQTAQECGFIVCFAVPFLVRG
HVFAVVLFFDDQPRTSINQDLNVAQDLASSLGNCYGASSAHIHRGESDKD
SSS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf
IPR029016	GAF-like_dom_sf
IPR011598	bHLH_dom