Gcaud3430.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3430.t1
Unique NameGcaud3430.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_17_length_79749_cov_4.367006contigNODE_17_length_79749_cov_4.367006:46286..46711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704325.1
PFAMsClpS
Max annot lvl2759|Eukaryota
Evalue3.54e-33
EggNOG OGs2CHM4@1|root,2SC6E@2759|Eukaryota
DescriptionATP-dependent Clp protease adaptor protein ClpS
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3430Gcaud3430Gracilaria caudata M_176_S67 malegeneNODE_17_length_79749_cov_4.367006 46286..46711 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3430.t1.stop1Gcaud3430.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_17_length_79749_cov_4.367006 46286..46288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3430.t1.CDS1Gcaud3430.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_17_length_79749_cov_4.367006 46286..46711 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3430.t1.exon1Gcaud3430.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_17_length_79749_cov_4.367006 46286..46711 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3430.t1.start1Gcaud3430.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_17_length_79749_cov_4.367006 46709..46711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3430.t1Gcaud3430.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_17_length_79749_cov_4.367006 46286..46711 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3430.t1 ID=Gcaud3430.t1|Name=Gcaud3430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=142bp
LPSRSRAARMFHMQLGAPSTQIGRPKTQIKKDIGRVTAQPSQPEADTERG
SAKARPRRKTQADQVPMYKVILLGDEEYVEAHVVTQLQKTVQLEKKEATR
IFWEAQGSGSSIICVVCEEHAEFYAQQLKRQEIFVIIEKDE*
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spliced messenger RNA

>Gcaud3430.t1 ID=Gcaud3430.t1|Name=Gcaud3430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:46286..46711- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCGTCGAGAAGCAGAGCTGCTCGCATGTTTCACATGCAACTCGGAGC
GCCCTCCACGCAAATCGGGCGGCCGAAGACGCAAATCAAGAAGGACATTG
GTCGTGTGACTGCTCAGCCATCACAGCCAGAAGCAGATACTGAACGAGGC
TCGGCAAAGGCGCGTCCTCGTCGCAAGACGCAAGCGGATCAGGTTCCCAT
GTACAAGGTAATTCTGCTTGGAGATGAGGAATATGTTGAGGCCCACGTGG
TGACGCAGTTGCAGAAGACTGTGCAACTGGAGAAGAAGGAAGCCACGAGG
ATTTTTTGGGAGGCGCAGGGTAGTGGAAGTAGCATTATCTGCGTGGTGTG
CGAAGAGCATGCTGAGTTTTATGCGCAACAACTGAAGAGACAAGAGATTT
TTGTGATCATAGAGAAGGATGAGTAA
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protein sequence of Gcaud3430.t1

>Gcaud3430.t1 ID=Gcaud3430.t1|Name=Gcaud3430.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=142bp
LPSRSRAARMFHMQLGAPSTQIGRPKTQIKKDIGRVTAQPSQPEADTERG
SAKARPRRKTQADQVPMYKVILLGDEEYVEAHVVTQLQKTVQLEKKEATR
IFWEAQGSGSSIICVVCEEHAEFYAQQLKRQEIFVIIEKDE*
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mRNA from alignment at NODE_17_length_79749_cov_4.367006:46286..46711-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3430.t1 ID=Gcaud3430.t1|Name=Gcaud3430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:46286..46711- (Gracilaria caudata M_176_S67 male)
TTGCCGTCGAGAAGCAGAGCTGCTCGCATGTTTCACATGCAACTCGGAGC
GCCCTCCACGCAAATCGGGCGGCCGAAGACGCAAATCAAGAAGGACATTG
GTCGTGTGACTGCTCAGCCATCACAGCCAGAAGCAGATACTGAACGAGGC
TCGGCAAAGGCGCGTCCTCGTCGCAAGACGCAAGCGGATCAGGTTCCCAT
GTACAAGGTAATTCTGCTTGGAGATGAGGAATATGTTGAGGCCCACGTGG
TGACGCAGTTGCAGAAGACTGTGCAACTGGAGAAGAAGGAAGCCACGAGG
ATTTTTTGGGAGGCGCAGGGTAGTGGAAGTAGCATTATCTGCGTGGTGTG
CGAAGAGCATGCTGAGTTTTATGCGCAACAACTGAAGAGACAAGAGATTT
TTGTGATCATAGAGAAGGATGAGTAA
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Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:46286..46711-

>Gcaud3430.t1 ID=Gcaud3430.t1|Name=Gcaud3430.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=426bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:46286..46711- (Gracilaria caudata M_176_S67 male)
TTGCCGTCGAGAAGCAGAGCTGCTCGCATGTTTCACATGCAACTCGGAGC
GCCCTCCACGCAAATCGGGCGGCCGAAGACGCAAATCAAGAAGGACATTG
GTCGTGTGACTGCTCAGCCATCACAGCCAGAAGCAGATACTGAACGAGGC
TCGGCAAAGGCGCGTCCTCGTCGCAAGACGCAAGCGGATCAGGTTCCCAT
GTACAAGGTAATTCTGCTTGGAGATGAGGAATATGTTGAGGCCCACGTGG
TGACGCAGTTGCAGAAGACTGTGCAACTGGAGAAGAAGGAAGCCACGAGG
ATTTTTTGGGAGGCGCAGGGTAGTGGAAGTAGCATTATCTGCGTGGTGTG
CGAAGAGCATGCTGAGTTTTATGCGCAACAACTGAAGAGACAAGAGATTT
TTGTGATCATAGAGAAGGATGAGTAA
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