Gcaud3441.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3441.t1
Unique NameGcaud3441.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_17_length_79749_cov_4.367006contigNODE_17_length_79749_cov_4.367006:69921..70301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_016270m
PFAMsDUF3007
Max annot lvl35493|Streptophyta
Evalue6.45e-20
EggNOG OGs2CJ9H@1|root,2RZP3@2759|Eukaryota,37UK6@33090|Viridiplantae,3GICA@35493|Streptophyta,4JPFM@91835|fabids
DescriptionProtein of unknown function (DUF3007)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3441Gcaud3441Gracilaria caudata M_176_S67 malegeneNODE_17_length_79749_cov_4.367006 69921..70301 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3441.t1.start1Gcaud3441.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_17_length_79749_cov_4.367006 69921..69923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3441.t1.CDS1Gcaud3441.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_17_length_79749_cov_4.367006 69921..70301 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3441.t1.exon1Gcaud3441.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_17_length_79749_cov_4.367006 69921..70301 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3441.t1.stop1Gcaud3441.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_17_length_79749_cov_4.367006 70299..70301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3441.t1Gcaud3441.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_17_length_79749_cov_4.367006 69921..70301 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3441.t1 ID=Gcaud3441.t1|Name=Gcaud3441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=127bp
MAEEGNRSTPDGNDGRGTSSLFGIRLRTNGDVIKFGLAAIALVYAIKAGI
QAAGVPDLLAGQLTTAFVSVFSLLAWISTYFFRVGSKGMTYAQQLRDYED
EVIKKRYEELTDEELKALGEELSDEA*
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spliced messenger RNA

>Gcaud3441.t1 ID=Gcaud3441.t1|Name=Gcaud3441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:69921..70301+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGGAAGGCAACCGATCGACACCTGACGGAAATGATGGACGAGG
AACTTCGAGTCTGTTTGGTATTAGATTACGAACGAACGGTGACGTCATTA
AGTTTGGCTTGGCTGCTATTGCTTTAGTTTACGCTATTAAAGCGGGAATT
CAAGCAGCTGGCGTACCTGATCTATTGGCCGGACAACTGACTACCGCTTT
CGTCTCCGTGTTCAGCTTGCTGGCTTGGATTTCCACCTATTTCTTCCGTG
TCGGTAGTAAGGGTATGACTTACGCACAACAGTTACGGGATTATGAGGAC
GAAGTTATAAAAAAACGCTATGAAGAACTCACAGATGAAGAGCTGAAAGC
TCTCGGCGAAGAGCTTAGTGACGAAGCATAG
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protein sequence of Gcaud3441.t1

>Gcaud3441.t1 ID=Gcaud3441.t1|Name=Gcaud3441.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=127bp
MAEEGNRSTPDGNDGRGTSSLFGIRLRTNGDVIKFGLAAIALVYAIKAGI
QAAGVPDLLAGQLTTAFVSVFSLLAWISTYFFRVGSKGMTYAQQLRDYED
EVIKKRYEELTDEELKALGEELSDEA*
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mRNA from alignment at NODE_17_length_79749_cov_4.367006:69921..70301+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3441.t1 ID=Gcaud3441.t1|Name=Gcaud3441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:69921..70301+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAGGAAGGCAACCGATCGACACCTGACGGAAATGATGGACGAGG
AACTTCGAGTCTGTTTGGTATTAGATTACGAACGAACGGTGACGTCATTA
AGTTTGGCTTGGCTGCTATTGCTTTAGTTTACGCTATTAAAGCGGGAATT
CAAGCAGCTGGCGTACCTGATCTATTGGCCGGACAACTGACTACCGCTTT
CGTCTCCGTGTTCAGCTTGCTGGCTTGGATTTCCACCTATTTCTTCCGTG
TCGGTAGTAAGGGTATGACTTACGCACAACAGTTACGGGATTATGAGGAC
GAAGTTATAAAAAAACGCTATGAAGAACTCACAGATGAAGAGCTGAAAGC
TCTCGGCGAAGAGCTTAGTGACGAAGCATAG
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Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:69921..70301+

>Gcaud3441.t1 ID=Gcaud3441.t1|Name=Gcaud3441.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=381bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:69921..70301+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAGGAAGGCAACCGATCGACACCTGACGGAAATGATGGACGAGG
AACTTCGAGTCTGTTTGGTATTAGATTACGAACGAACGGTGACGTCATTA
AGTTTGGCTTGGCTGCTATTGCTTTAGTTTACGCTATTAAAGCGGGAATT
CAAGCAGCTGGCGTACCTGATCTATTGGCCGGACAACTGACTACCGCTTT
CGTCTCCGTGTTCAGCTTGCTGGCTTGGATTTCCACCTATTTCTTCCGTG
TCGGTAGTAAGGGTATGACTTACGCACAACAGTTACGGGATTATGAGGAC
GAAGTTATAAAAAAACGCTATGAAGAACTCACAGATGAAGAGCTGAAAGC
TCTCGGCGAAGAGCTTAGTGACGAAGCATAG
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