Gcaud3442.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3442.t1
Unique Name	Gcaud3442.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	248

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:70415..71244 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4113.PGSC0003DMT400037388
PFAMs	EAP30
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12188
KEGG Pathway	ko04144,map04144
KEGG Module	M00410
GOs	GO:0000814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042886,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901564,GO:1901565,GO:1901575
Evalue	2.7e-69
EggNOG OGs	KOG3341@1\|root,KOG3341@2759\|Eukaryota,37PQ2@33090\|Viridiplantae,3GD3U@35493\|Streptophyta,44DKJ@71274\|asterids
Description	Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs
COG category	U
BRITE	ko00000,ko00001,ko00002,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3442	Gcaud3442	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 70415..71244 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3442.t1	Gcaud3442.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 70415..71244 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3442.t1.stop1	Gcaud3442.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 70415..70417 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3442.t1.CDS1	Gcaud3442.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 70415..70733 -
Gcaud3442.t1.CDS2	Gcaud3442.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 70820..71244 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3442.t1.exon1	Gcaud3442.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 70415..70733 -
Gcaud3442.t1.exon2	Gcaud3442.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 70820..71244 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3442.t1.intron1	Gcaud3442.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_17_length_79749_cov_4.367006 70734..70819 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3442.t1.start1	Gcaud3442.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 71242..71244 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:70415..71244-
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:70415..71244-

mRNA sequence

>Gcaud3442.t1 ID=Gcaud3442.t1|Name=Gcaud3442.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=248bp
MPPGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQ
FAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYE
LGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALM
KLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQ
KNLNWDNRRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT*

spliced messenger RNA

>Gcaud3442.t1 ID=Gcaud3442.t1|Name=Gcaud3442.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=744bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:70415..71244- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGGACGTAGACCTGGTGTAGGAGCAATCCGTGAGAACGTGAG
AAGACGGGAAGAACTAGCAAAGCGTGGGGCAATGATATCTGCTGAAACTG
CGCAGCACATGAAACAACAGCTACAAACGTTCAGAACGAATTTGGAACAA
TTTGCCATCAATCACAAGAAAGAGATTCAAAGCGATGCTGCGTTTCGTGC
AAAGTTCCATGCTATGTGCGCTTCCATTGGCGTTGATCCTTTAACATCTA
GAAAGGGAATTTGGTCAGACCTCTTGAATGTGGGTGACTATTATTATGAA
CTCGGTGTGCGAATTATTGAGGTTTGTGTGGCTACAAGACCAACGAACGG
AGGCATCATTTCGTTGGCCGAGCTTGTTTCAGCTCTGCGCACGCGAAGAA
TGACATACACGGAGAATGTTTCAAGTGACGACGTAGAGAGGGCGCTGATG
AAATTAGACGTTCTCGGAGGGGGCTTTAAGATTATGATGGTAGGTCACAG
AAAGGTTGTTCAGTCCGTTCCCGTTGAGCTCAGCGTAGACCACACACGAG
CGTTGGCGGCATGCGAGGAAACTGGATACGTAACTGCTTCTGCTTTGCAG
AAGAACTTGAACTGGGACAATCGAAGAATAAGGAACACACTTCGCTTTCT
ACTCGAGCATGAAATTGCATGGCTCGACCTCCAAACTGCAGAGCCTTCAT
ATTGGATCCTTGGACTTATGTCTGGCTCGTCCACTTTTACATAA

protein sequence of Gcaud3442.t1

>Gcaud3442.t1 ID=Gcaud3442.t1|Name=Gcaud3442.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
MPPGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQ
FAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYE
LGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALM
KLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQ
KNLNWDNRRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:70415..71244-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3442.t1 ID=Gcaud3442.t1|Name=Gcaud3442.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=830bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:70415..71244- (Gracilaria caudata M_176_S67 male)
ATGCCGCCCGGACGTAGACCTGGTGTAGGAGCAATCCGTGAGAACGTGAG
AAGACGGGAAGAACTAGCAAAGCGTGGGGCAATGATATCTGCTGAAACTG
CGCAGCACATGAAACAACAGCTACAAACGTTCAGAACGAATTTGGAACAA
TTTGCCATCAATCACAAGAAAGAGATTCAAAGCGATGCTGCGTTTCGTGC
AAAGTTCCATGCTATGTGCGCTTCCATTGGCGTTGATCCTTTAACATCTA
GAAAGGGAATTTGGTCAGACCTCTTGAATGTGGGTGACTATTATTATGAA
CTCGGTGTGCGAATTATTGAGGTTTGTGTGGCTACAAGACCAACGAACGG
AGGCATCATTTCGTTGGCCGAGCTTGTTTCAGCTCTGCGCACGCGAAGAA
TGACATACACGGAGAATGTTTCAAGGTACGTACAATCCTGCTGCATGCAT
TTCACAAGCTGCGACCGCATGTGAAACTCCGTTCTAACCATACCCTGCTC
TCATTTTTTAGTGACGACGTAGAGAGGGCGCTGATGAAATTAGACGTTCT
CGGAGGGGGCTTTAAGATTATGATGGTAGGTCACAGAAAGGTTGTTCAGT
CCGTTCCCGTTGAGCTCAGCGTAGACCACACACGAGCGTTGGCGGCATGC
GAGGAAACTGGATACGTAACTGCTTCTGCTTTGCAGAAGAACTTGAACTG
GGACAATCGAAGAATAAGGAACACACTTCGCTTTCTACTCGAGCATGAAA
TTGCATGGCTCGACCTCCAAACTGCAGAGCCTTCATATTGGATCCTTGGA
CTTATGTCTGGCTCGTCCACTTTTACATAA

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:70415..71244-

>Gcaud3442.t1 ID=Gcaud3442.t1|Name=Gcaud3442.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=744bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:70415..71244- (Gracilaria caudata M_176_S67 male)
ATGCCGCCCGGACGTAGACCTGGTGTAGGAGCAATCCGTGAGAACGTGAG
AAGACGGGAAGAACTAGCAAAGCGTGGGGCAATGATATCTGCTGAAACTG
CGCAGCACATGAAACAACAGCTACAAACGTTCAGAACGAATTTGGAACAA
TTTGCCATCAATCACAAGAAAGAGATTCAAAGCGATGCTGCGTTTCGTGC
AAAGTTCCATGCTATGTGCGCTTCCATTGGCGTTGATCCTTTAACATCTA
GAAAGGGAATTTGGTCAGACCTCTTGAATGTGGGTGACTATTATTATGAA
CTCGGTGTGCGAATTATTGAGGTTTGTGTGGCTACAAGACCAACGAACGG
AGGCATCATTTCGTTGGCCGAGCTTGTTTCAGCTCTGCGCACGCGAAGAA
TGACATACACGGAGAATGTTTCAAGTGACGACGTAGAGAGGGCGCTGATG
AAATTAGACGTTCTCGGAGGGGGCTTTAAGATTATGATGGTAGGTCACAG
AAAGGTTGTTCAGTCCGTTCCCGTTGAGCTCAGCGTAGACCACACACGAG
CGTTGGCGGCATGCGAGGAAACTGGATACGTAACTGCTTCTGCTTTGCAG
AAGAACTTGAACTGGGACAATCGAAGAATAAGGAACACACTTCGCTTTCT
ACTCGAGCATGAAATTGCATGGCTCGACCTCCAAACTGCAGAGCCTTCAT
ATTGGATCCTTGGACTTATGTCTGGCTCGTCCACTTTTACATAA