Gcaud3442.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3442.t1
Unique NameGcaud3442.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length248
Homology
BLAST of Gcaud3442.t1 vs. uniprot
Match: A0A2V3IQ46_9FLOR (Vacuolar-sorting protein SNF8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ46_9FLOR)

HSP 1 Score: 410 bits (1053), Expect = 2.320e-143
Identity = 206/247 (83.40%), Postives = 222/247 (89.88%), Query Frame = 0
Query:    1 MPPGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT 247
            MPPGRRPG  +IRE+VRRREE+AKRGAMISAETAQHMK QL+TF T LEQFAI+HK EIQ D AFRAKFH+MCASIGVDPLTSRKG WSDLL VGDYYYEL VRIIEVCVATRPTNGGIISL ELVSALR RR TYTENVSSDDVERAL KL+VL GGFK+MM+GHRKVVQSVPVELSVDHT ALA  EETGY++ASAL++ L W+  RI  TLRFLLEHEIAWLDLQT+EP+YWILGLMSGSSTFT
Sbjct:    1 MPPGRRPGRASIREDVRRREEMAKRGAMISAETAQHMKMQLRTFSTKLEQFAIDHKDEIQRDPAFRAKFHSMCASIGVDPLTSRKGKWSDLLGVGDYYYELAVRIIEVCVATRPTNGGIISLRELVSALRIRRTTYTENVSSDDVERALAKLNVLEGGFKVMMIGHRKVVQSVPVELSVDHTNALAISEETGYISASALREKLKWEKERIMTTLRFLLEHEIAWLDLQTSEPTYWILGLMSGSSTFT 247          
BLAST of Gcaud3442.t1 vs. uniprot
Match: R7Q541_CHOCR (Vacuolar sorting protein SNF8 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q541_CHOCR)

HSP 1 Score: 255 bits (651), Expect = 2.960e-83
Identity = 120/176 (68.18%), Postives = 149/176 (84.66%), Query Frame = 0
Query:   72 MCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT 247
            MCA+IGVDPLTS+KG+WSDLL VGD+YYEL VRIIE+CVATRP NGGI+SL EL+  L+T+R+TYTE +SSDDVERA+ KLDVLG GFKIM VG+ ++V+SVPVEL+ DHT+AL AC   GY  AS LQ+  NWD  R R TL+FLL++EIAWLD Q++EP+YWILGL++G+S+ T
Sbjct:    1 MCATIGVDPLTSKKGVWSDLLGVGDFYYELAVRIIEICVATRPINGGIMSLRELLPVLQTKRITYTEKISSDDVERAVAKLDVLGSGFKIMDVGNNRLVRSVPVELNPDHTKALTACGTKGYTNASELQRLTNWDAYRTRTTLQFLLQNEIAWLDAQSSEPTYWILGLVAGASSQT 176          
BLAST of Gcaud3442.t1 vs. uniprot
Match: A0A7S0ZAI5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAI5_9RHOD)

HSP 1 Score: 256 bits (655), Expect = 6.890e-83
Identity = 119/237 (50.21%), Postives = 164/237 (69.20%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSS 244
            GV  ++E   R+    +RGA + AET + MK Q+  F+ NLE FA NHKKEIQ++  FR +FH MCA+ GVDPLTS KG+WS++L VG+YYYEL +R  E+C+ TR  NGG++ ++E    L  +R TYTE+VS DD+ERA+ KL VL GGF I+ +G + V+QS+P+ELS DHT  L   E TG++T S+    L W   R+R+   + L+HEIAW+D QT E +YW LGL+ G++
Sbjct:    6 GVSGLQEEAMRQRAFEERGAALEAETVEKMKLQMIEFQKNLEIFAKNHKKEIQTNPEFRTQFHKMCATAGVDPLTSTKGVWSEVLGVGNYYYELAIRTAEICINTRVLNGGMLEVSECKKRLEQKRFTYTEHVSEDDIERAVKKLKVLQGGFDIVRLGKKSVIQSIPMELSPDHTTILRLAENTGFLTLSSTVNALKWQENRVRDAFEYFLQHEIAWIDTQTKESTYWFLGLVKGAA 242          
BLAST of Gcaud3442.t1 vs. uniprot
Match: A0A5J4Z4U0_PORPP (Vacuolar-sorting protein SNF8 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4U0_PORPP)

HSP 1 Score: 237 bits (605), Expect = 3.180e-75
Identity = 113/239 (47.28%), Postives = 160/239 (66.95%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTA--EPSYWILGLMSGSS 244
            GV  +    + +    + GA ++AE    MK Q++ F+ NLE FA+ HKK+IQ++A FRAKFHAMC ++GVDPL S KG+W+  L VGDYYYEL VR  E+C+ TR  NGGI+ + E    L+ +R T+TE++S DDV RA+ KL VL GGF+++ +  + V+QS+PVELS D   A+  CE+ G +  S L     W   R+   ++FLL++E+ WLDLQ A  EP+YWILGL+ G++
Sbjct:    6 GVSGLHAQQQHKAAYEQAGAALNAELTASMKVQMEQFQHNLESFAVKHKKDIQNNAVFRAKFHAMCLTVGVDPLVSSKGVWASTLGVGDYYYELAVRTAEICITTRVLNGGILDVEECRQRLKRKRFTFTEDISHDDVLRAVEKLKVLQGGFRLVQLDKKTVIQSMPVELSRDQVTAMQLCEDNGILLKSKLASKTGWKKERVDAAVKFLLDYEMCWLDLQYAGGEPAYWILGLVKGAA 244          
BLAST of Gcaud3442.t1 vs. uniprot
Match: A0A7S0XMQ4_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XMQ4_9RHOD)

HSP 1 Score: 229 bits (583), Expect = 1.500e-71
Identity = 121/252 (48.02%), Postives = 157/252 (62.30%), Query Frame = 0
Query:    5 RRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRAL--------AACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTAE-PSYWILGLMSGSSTFT 247
            R  G+  I    +R+  L   GA + +E    M QQL  FR +LE FA NHK EIQ+D AFRAKFH MCA++GVDPLTS KG W   L VGD+YYEL VR +EVC+ TR  NGG++++ E    L+ +R TYTE +SSDD+ERA+ KL VL GGF ++ +G   V++SVP+E S+D TR L        A     G ++   + K L W   R ++ L  LL  EIAWLD Q    P YW LGL+SG++T T
Sbjct:   16 RNVGIAGIHAAQQRQAALNSAGAALDSELTASMHQQLGEFRKSLESFARNHKHEIQNDPAFRAKFHQMCATVGVDPLTSAKGSWMAALGVGDFYYELAVRTVEVCIQTRVLNGGVLNVDECRKRLQQKRFTYTEKISSDDIERAIRKLRVLQGGFDVIKLGESSVIKSVPLEFSIDQTRVLQLATRATSAGAPVDGALSVPIVAKALEWPEHRAQDALVLLLNAEIAWLDSQARPLPLYWFLGLVSGAATST 267          
BLAST of Gcaud3442.t1 vs. uniprot
Match: F2U2T5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U2T5_SALR5)

HSP 1 Score: 221 bits (564), Expect = 4.510e-69
Identity = 112/242 (46.28%), Postives = 154/242 (63.64%), Query Frame = 0
Query:    3 PGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSS 244
            P +  GV  ++    R+ E    G     E AQ M +QL  F+ NLE+FA  +KKEI+    FR  F  MC  IGVDPL S KG WS LL VGD+YYELGV+++E C+ATR  NGG+I +AEL++A+ TRR ++ + V++ DVE A+ +L VLG GF+++ V +R+VV S P EL+ DH       ++ GYVTA AL  +L W N R +  L  L++  +AW+D Q A   YW+ GLM+GSS
Sbjct:    2 PRKVKGVRGLKMREARKAEAQALGEKSKQEQAQEMHKQLGIFKENLEEFARKYKKEIKRSPDFRGDFQRMCHQIGVDPLASNKGFWSQLLGVGDFYYELGVQVVEACMATRGLNGGVIDIAELLNAVNTRRGSHVQRVATGDVEEAVARLQVLGSGFRVVKVDNRRVVVSQPKELNADHMAIFNRAKDCGYVTAEALCADLKWTNDRAQTALGELVQRGVAWVDEQAAPHEYWVPGLMAGSS 243          
BLAST of Gcaud3442.t1 vs. uniprot
Match: H2TYV4_TAKRU (Vacuolar-sorting protein SNF8 n=79 Tax=Actinopteri TaxID=186623 RepID=H2TYV4_TAKRU)

HSP 1 Score: 220 bits (561), Expect = 1.930e-68
Identity = 112/235 (47.66%), Postives = 156/235 (66.38%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTA-EPSYWILGLMS 241
            G GAI +      +  +RG +I+ +    M +QL+TF++NLE+FA  HK+EI+ ++ FR +F  MCA+IGVDPL S KG WS++L VGD+YYELGV+IIEVC+A +  NGG+I+L EL   +   R  Y ++VS DD+ RA+ KL V+G GF ++ VG   +VQSVP EL++DHT  L   E+ GYVT S ++  L W+  R  + L  LL+  +AWLD Q A EP YW+  L S
Sbjct:    7 GAGAIAKKKLAEAKYKERGTVIAEDQIAQMSKQLETFKSNLEEFASKHKQEIRKNSQFRVQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLDELHHRVLKGRGKYAQDVSQDDLMRAIKKLKVMGNGFGMIPVGGSYLVQSVPAELNMDHTVVLQLAEKKGYVTVSEIKDGLKWERERACHVLDHLLKEGLAWLDSQAAGEPQYWLPALFS 241          
BLAST of Gcaud3442.t1 vs. uniprot
Match: A0A7K5VEQ5_9CORV (Vacuolar-sorting protein SNF8 (Fragment) n=1 Tax=Platysteira castanea TaxID=1160851 RepID=A0A7K5VEQ5_9CORV)

HSP 1 Score: 218 bits (555), Expect = 9.140e-68
Identity = 108/219 (49.32%), Postives = 148/219 (67.58%), Query Frame = 0
Query:   24 KRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQT-AEPSYWILGLMS 241
            +RG++++ +    M +QL+TFRTNL++FA  HK EI+   AFR +F  MCA+IGVDPL S KG WS++L VGD+YYELGV+I+EVC+A +  NGG+I+L EL   +   R  + ++VS DD+ RA+ KL VLG GF I+  G   +VQSVP EL++DHT  L   E+ G+VT S ++  L W+  R R  L  LL   +AWLD Q  AEP +W+ GL S
Sbjct:    6 ERGSVLAEDQLAQMSKQLETFRTNLQEFASKHKHEIRRSPAFRLQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIVEVCLALKHRNGGLITLEELQQQVLKGRGKFAQDVSQDDLLRAIKKLKVLGSGFGIIPAGGTFLVQSVPAELNMDHTVVLQLAEKKGFVTVSEIRAGLGWETERARQVLEHLLREGLAWLDAQAPAEPQFWLPGLFS 224          
BLAST of Gcaud3442.t1 vs. uniprot
Match: A0A7K6DIY4_9PASS (Vacuolar-sorting protein SNF8 (Fragment) n=1 Tax=Origma solitaria TaxID=720586 RepID=A0A7K6DIY4_9PASS)

HSP 1 Score: 218 bits (556), Expect = 9.720e-68
Identity = 111/235 (47.23%), Postives = 152/235 (64.68%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTA-EPSYWILGLMS 241
            G GAI        +  +RG +++ +    M +QL TFRTNLE+FA  HK+EI+ +  FR +F  MCA+IGVDPL S KG WS++L VGD+YYELGV+IIEVC+A +  NGG+I+L EL   +   R  + ++VS DD+ RA+ KL VLG GF ++ VG   +VQSVP EL++DHT  L   E+ G+VT S +  +L W+  R +  L  LL+  +AWLD Q   EP YW+  L S
Sbjct:    7 GAGAIARRKLTEAKYKERGTVLAEDQLAQMSKQLDTFRTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELQQQVLKGRGKFAQDVSQDDLLRAIKKLKVLGSGFGVIPVGGTVLVQSVPAELNMDHTVVLQLAEKKGFVTVSEICSSLKWETERAKQVLEHLLKEGMAWLDAQAPREPHYWLPALFS 241          
BLAST of Gcaud3442.t1 vs. uniprot
Match: A0A401P2N1_SCYTO (Vacuolar-sorting protein SNF8 n=9 Tax=Elasmobranchii TaxID=7778 RepID=A0A401P2N1_SCYTO)

HSP 1 Score: 218 bits (555), Expect = 1.560e-67
Identity = 110/235 (46.81%), Postives = 153/235 (65.11%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQKNLNWDNRRIRNTLRFLLEHEIAWLDLQTAE-PSYWILGLMS 241
            G GAI +      +  +RG +++ +    M +QL+ F+T+LE+FA  HK+EI+  + FR +F  MCA+IGVDPL S KG WS++L VGD+YYELGV+IIEVC+A +  NGG+I+L EL   +   R  + ++VS DD+ RA+ KL  LG GF I+ VG R +VQSVP EL++DHT  L   E+ GYVT S ++ +L WD  R    L  LL+  +AW+D Q  E P YW+  L S
Sbjct:    7 GAGAIAKRKLAEAKYKERGTVMAEDQLAQMSKQLEMFKTHLEEFASKHKQEIRKSSQFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLDELHQRVLKGRGKFAQDVSQDDLIRAIKKLKSLGNGFSIIPVGGRYLVQSVPAELNMDHTVVLQIAEKNGYVTVSEIKSSLKWDTERTNQVLEHLLKEGLAWVDKQAPEEPQYWLPALFS 241          
The following BLAST results are available for this feature:
BLAST of Gcaud3442.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ46_9FLOR2.320e-14383.40Vacuolar-sorting protein SNF8 n=1 Tax=Gracilariops... [more]
R7Q541_CHOCR2.960e-8368.18Vacuolar sorting protein SNF8 n=1 Tax=Chondrus cri... [more]
A0A7S0ZAI5_9RHOD6.890e-8350.21Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z4U0_PORPP3.180e-7547.28Vacuolar-sorting protein SNF8 n=1 Tax=Porphyridium... [more]
A0A7S0XMQ4_9RHOD1.500e-7148.02Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
F2U2T5_SALR54.510e-6946.28Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
H2TYV4_TAKRU1.930e-6847.66Vacuolar-sorting protein SNF8 n=79 Tax=Actinopteri... [more]
A0A7K5VEQ5_9CORV9.140e-6849.32Vacuolar-sorting protein SNF8 (Fragment) n=1 Tax=P... [more]
A0A7K6DIY4_9PASS9.720e-6847.23Vacuolar-sorting protein SNF8 (Fragment) n=1 Tax=O... [more]
A0A401P2N1_SCYTO1.560e-6746.81Vacuolar-sorting protein SNF8 n=9 Tax=Elasmobranch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 93..173
e-value: 2.2E-28
score: 99.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 174..246
e-value: 6.6E-19
score: 69.6
IPR040608Snf8/Vps36 familyPFAMPF04157EAP30coord: 8..226
e-value: 3.6E-66
score: 222.8
IPR016689ESCRT-2 complex, Snf8PIRSFPIRSF017215ESCRT2_Vps22coord: 4..245
e-value: 8.7E-82
score: 271.9
IPR016689ESCRT-2 complex, Snf8PANTHERPTHR12806EAP30 SUBUNIT OF ELL COMPLEXcoord: 5..243
NoneNo IPR availableGENE3D6.10.140.180coord: 27..86
e-value: 1.1E-23
score: 84.6
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 177..239
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 28..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_17_length_79749_cov_4.367006contigNODE_17_length_79749_cov_4.367006:70415..71244 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3442.t1Gcaud3442.t1Gracilaria caudata M_176_S67 malemRNANODE_17_length_79749_cov_4.367006 70415..71244 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3442.t1 ID=Gcaud3442.t1|Name=Gcaud3442.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
MPPGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQ
FAINHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGIWSDLLNVGDYYYE
LGVRIIEVCVATRPTNGGIISLAELVSALRTRRMTYTENVSSDDVERALM
KLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALAACEETGYVTASALQ
KNLNWDNRRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR040608Snf8/Vps36
IPR016689ESCRT-2_cplx_Snf8
IPR036390WH_DNA-bd_sf